List of clones in pair P004236.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004E02Sequence385003251 (120)gb|AAV33983.1|7e-58alpha tubulin, partial [Pinus taeda] gb|AAV33984.1| alpha tubulin, partial [Pinu336011383 (5)dbj|BAF37798.1|5e-20hypothetical protein [Ipomoea trifida]

Contig 3251 BLAST Hits against nr-aa DB Show

Contig 11383 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig003251============================================1740         ============================================Contig011383============================================ 821
  73 --------------------->JMSF004E02                                                                                                                                        <-----------------------------------rJMSF004E02  
                           ----------------------------------->JMFS092A07-                                            
                                                                  <---------------------------------JMFN003P23-       
                                              ----------------------------------->JMFN034O20-                         
                                                                     <-------------------rJMFF032O24-                 
                                                         --------------------->JMFN009N21-                            
      ----------------------------------->JMFS031C04-                                                                 
       ---------------------------------->JMFS100B08-                                                                 
       ---------------------------------->JMFN040N07-                                                                 
                                      ----------------------------------->JMFN003P02-                                 
                                                                 ------------------------------------>JMFN010F24-     
      ------------------------------------>JMFN006I17-                                                                
                                                              <---------------------------------------rJMFF001E02-    
     -------------------------------------------->JMSF046M08-                                                         
                                                         ----------------------------------->JMFN035D19-              
      ------------------------------------>JMFS024D06-                                                                
                                                                    ------------------------------->JMFN002D09-       
                                          ----------------------------------->JMFN038B06-                             
     ----------------------------------------------->JMSF041F20*                                                      
                                                          <------------------------------------------rJMFF008C24*     
     ------------------------>JMFF030K08-                                                                             
                                                                        ------------------------------>JMFN004A05-    
     ----------->JMSF006A14-                                                                                          
        ---------------------------------->JMFS093A04-                                                                
                                ----------------------------------->JMFS111E05-                                       
                                                         <----------------------------------------rJMFF038K12*        
                         ---------------------------------->JMFS035C12-                                               
                                                              <--------------------------------------rJMFF038P01#     
      ------------------------------------>JMFS144D06-                                                                
      --------------------------------->JMFS051F08-                                                                   
                                                                                                                            <---------------------------------------------------------------------------------------------rJMSF044I15* 
                                                                                                                                  <------------------------------------------------------------------------------------rJMSF019C22* 
                                                                                                                      <---------------------------------------------------------------------------------------------------rJMSF038K08* 
                                                                                                                                                                  <----------------------------------------------------rJMSF006F07* 
                                                       <----------------------------------------rJMFF022E03**
         -------------------------------->JMFF015C18**
                                                          <--------------------------------------rJMSF031C12**
                                                                  <--------------------------------rJMFF030F19**
                                                              <-------------------------------------rJMFF011I22**
     ------------------------------>JMFF035O23**
     ---------------------->JMFF022P06**
                                                             <---------------------------------------rJMSF048D24**
     -------------------------------------->JMSF048D24**
                                                                               <-----------------------rJMFF044C14**
     --------------------------------------->JMSF020D01**
     ------------------------->JMFF026O24**
     ---------------------->JMSF010G10**
     ------------------------------>JMFF016H22**
                                                                              ------------------------->JMSF012L15**
                                                     <---------------------------------------------rJMFF025F10**
     -------------------------->JMFF001H15**
                                                      <-------------------------------------------rJMFF026O24**
     --------------------->JMFF030F19**
       --------------------------------->JMFF032J24**
                                                      <---------------------------------------------rJMSF020D01**
                                                              <-------------------------------------rJMFF001H15**
                                                              <---------------------------------------rJMFF015C18**
     ----------------------------------->JMFF044C14**
     --------------------------------------->JMSF031C12**
                                                     <-------------------------------------------rJMFF016H22**
     ---------------------------------------------->JMSF042L24**
                                                      <---------------------------------------------rJMFF031N18**
     -------->JMFF025J21**
                                                         <----------------------------------------rJMFF005O22**
     -------------->JMFF003J05**
                                                                <---------------------------------rJMFF021O06**
                                         ------------------------------>JMFF039M15**
     ------------------------------>JMFF025F10**
     --------------->JMFF031N18**
                                                     <-----------------------------------------rJMFF040J22**
     --------------------------->JMFF005O22**
     ------------------------------------->JMSF021M11**
                                                     <--------------------------------------------rJMSF017L20**
                                                                       <----------------------------rJMFF050F03**
     ------------------------------->JMFF008B19**
     ----------------------->JMSF003K06**
     ------------->JMFF047E03**
                                                              <---------------------------------------rJMFF004O24**
      ---------------------------------->JMFF040J22**
                                                                                     <-----------rJMFF035O23**
     ---------------------------------->JMFF051K11**
     -------------------------->JMFF046H14**
     ------------------------->JMFF046N18**
     --------------------------->JMFF029H21**
      --------------------------------->JMFF020D13**
      --------------------------------->JMFF032O23**
     --------------------------->JMFF038H02**
                                                              <--------------------------------------rJMFF008B19**
     --------------------->JMFF021O06**
                                                         <----------------------------------------rJMFF038H02**
                                                            <-----------------------------------------rJMFF039M15**
                                                        <----------------------------------------rJMSF043B17**
                                                                           <--------------rJMFF025J21**
     ----------------------------->JMFF012K14**
     ---------------------------------->JMFF011I22**
     ----------------------------------->JMFF050F03**
     ------------------------------->JMFF040L16**
                                                                             <----------------------rJMFF047E03**
                                                         <-----------------------------------------rJMFF012K14**
                                                                              <----------------------rJMSF012L15**
                                                          <----------------------------------------rJMFF032O23**
                                                        <-------------------------------------------rJMSF050J19**
                                                          <---------------------------------------rJMSF042L24**
                                                                            <-----------------------rJMFF046N18**
                                                          <------------------------------------------rJMFF020D13**
     -------------------------------------->JMSF021O05**
     --------------------------->JMFF030H04**
     ------------------------------>JMFF022E03**
                                                          <-------------------------------------------rJMFF022P06**
     ------------------------------>JMFF004O24**
                                                                   <----------------------------------rJMFF030H04**
                                                              <------------------------------------------rJMFF040L16**
                                                          <----------------------------------------rJMFF003J05**
     ------------------------->JMSF017L20**
     ------------------------------------>JMSF043B17**
                                                                       <----------------------------rJMFF051K11**
                                                         <----------------------------------------rJMFF029H21**
                                                                              <----------------------rJMFF046H14**
                                                     <-------------------------------------------rJMSF021O05**
                                                      <-------------------------------------------rJMFF032J24**
                                                      <-------------------------------------------rJMSF010G10**
                                                       <--------------------------------------------rJMSF021M11**
                                                      <------------------------------------------rJMSF003K06**
     -------------------------------------->JMSF050J19**