Contig 011383:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF004E02Sequence385003251 (120)gb|AAV33983.1|7e-58alpha tubulin, partial [Pinus taeda] gb|AAV33984.1| alpha tubulin, partial [Pinu336011383 (5)dbj|BAF37798.1|5e-20hypothetical protein [Ipomoea trifida]
JMSF006F07Sequence352009197 (4)gb|AAS79608.1|8e-50putative histone deacetylase [Ipomoea trifida]438011383 (5)dbj|BAF37798.1|2e-53hypothetical protein [Ipomoea trifida]
JMSF019C22Sequence237009197 (4)gb|AAS79608.1|9e-22putative histone deacetylase [Ipomoea trifida]702011383 (5)dbj|BAF37798.1|9e-97hypothetical protein [Ipomoea trifida]
JMSF038K08Sequence664009197 (4)gb|AAS79608.1|2e-140putative histone deacetylase [Ipomoea trifida]804011383 (5)emb|CDP06960.1|2e-111unnamed protein product [Coffea canephora]
JMSF044I15Sequence794009197 (4)gb|AAS79608.1|2e-131putative histone deacetylase [Ipomoea trifida]754011383 (5)emb|CDP06960.1|1e-111unnamed protein product [Coffea canephora]

Alignment

This contig is upended


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rJMSF038K08+                             TCTTCCGAACAGTAAGATTGTTTCTAGAAACACAAATATCT
                      ____________________________________________________________
consensus                                TCTTCCGAACAGTAAGATTGTTTCTAGAAACACAAATATCT
 
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rJMSF044I15+                  GTTTTTGATTGTAGTTGTTTCATTGTAAGATCTTGGCNTTNGGGCATGGTAT
rJMSF038K08+          TCAATTTTGTTTTTGATTGTAGTTGTTTCATTGTAAGATCTTGGCTTT-GGGCATGGTAT
                      ____________________________________________________________
consensus             TCAATTTTGTTTTTGATTGTAGTTGTTTCATTGTAAGATCTTGGCTTTNGGGCATGGTAT
 
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rJMSF044I15+          TTGTAGATTATTTCAAAGGTGGTTGAAACATATATACCAGGAGCAATAGTTCTCCAATGT
rJMSF019C22+                ATTATTTCAAAGGTGGTTGAAACATATATACCAGGAGCAATAGTTCTCCAATGT
rJMSF038K08+          TTGTAGATTATTTCAAAGGTGGTTGAAACATATATACCAGGAGCAATAGTTCTCCAATGT
                      ____________________________________________________________
consensus             TTGTAGATTATTTCAAAGGTGGTTGAAACATATATACCAGGAGCAATAGTTCTCCAATGT
 
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rJMSF044I15+          GGGGCAGATTCACTAGCTGGTGATCGTTTGGGCTGCTTTAACCTCTCCATTGATG-----
rJMSF019C22+          GGGGCAGATTCACTAGCTGGTGATCGTTTGGGCTGCTTTAACCTCTCCATTGATGGTGCT
rJMSF038K08+          GGGGCAGATTCACTAGCTGGTGATCGTTTGGGCTGCTTTAACCTCTCCATTGATG-----
                      ____________________________________________________________
consensus             GGGGCAGATTCACTAGCTGGTGATCGTTTGGGCTGCTTTAACCTCTCCATTGATG-----
 
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rJMSF044I15+          ---------GGCATGCTGAATGTGTTCGGTTTGTGAAGAAATTTAATATTCCCCTGCTGG
rJMSF019C22+          AGTCTACTTGGCATGCTGAATGTGTTCGGTTTGTGAAGAAATTTAATATTCCCCTGCTGG
rJMSF038K08+          ---------GGCATGCTGAATGTGTTCGGTTTGTGAAGAAATTTAATATTCCCCTGCTGG
                      ____________________________________________________________
consensus             ---------GGCATGCTGAATGTGTTCGGTTTGTGAAGAAATTTAATATTCCCCTGCTGG
 
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rJMSF044I15+          TAACTGGAGGAGGGGGGTATACAAAAGAAAATGTTGCTAGATGTTGGGCTTATGAAACTG
rJMSF019C22+          TAACTGGAGGAGGGGGGTATACAAAAGAAAATGTTGCTAGATGTTGGGCTTATGAAACTG
rJMSF038K08+          TAACTGGAGGAGGGGGGTATACAAAAGAAAATGTTGCTAGATGTTGGGCTTATGAAACTG
                      ____________________________________________________________
consensus             TAACTGGAGGAGGGGGGTATACAAAAGAAAATGTTGCTAGATGTTGGGCTTATGAAACTG
 
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rJMSF044I15+          GGGTTCTTCTAGACTCAGAGCTTCCTAATGAGATACCTGATAATGACTACATCAAATATT
rJMSF019C22+          GGGTTCTTCTAGACTCAGAGCTTCCTAATGAGATACCTGATAATGACTACATCAAATATT
rJMSF006F07+                                     ATGAGATACCTGATAATGACTACATCAAATATT
rJMSF038K08+          GGGTTCTTCTAGACTCAGAGCTTCCTAATGAGATACCTGATAATGACTACATCAAATATT
                      ____________________________________________________________
consensus             GGGTTCTTCTAGACTCAGAGCTTCCTAATGAGATACCTGATAATGACTACATCAAATATT
 
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rJMSF044I15+          TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
rJMSF004E02+                                                              TAGCAANT
rJMSF019C22+          TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
rJMSF006F07+          TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
rJMSF038K08+          TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
                      ____________________________________________________________
consensus             TTGGCCCCGATTATTCACTGAAGATTCCTGGTGGGCACATTGAGAACTTGAATAGCAAGT
 
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rJMSF044I15+          CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
rJMSF004E02+          CATACCTTGNCACCATNAAATCACATGTATTAGAAAATCTNNGATACATCCAGCATGCTC
rJMSF019C22+          CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
rJMSF006F07+          CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
rJMSF038K08+          CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
                      ____________________________________________________________
consensus             CATACCTTGGCACCATAAAATCACATGTATTAGAAAATCTTCGATACATCCAGCATGCT-
 
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rJMSF044I15+          CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
rJMSF004E02+          CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGANTTCTATATTCCCGATTTTGATGAAGAT
rJMSF019C22+          CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
rJMSF006F07+          CNTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
rJMSF038K08+          CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
                      ____________________________________________________________
consensus             CCTAGTGTGCAGATGCAAGAGGTGCCTCCTGACTTCTATATTCCCGATTTTGATGAAGAT
 
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rJMSF044I15+          ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
rJMSF004E02+          ACGCAAAATCNTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
rJMSF019C22+          ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
rJMSF006F07+          ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAANCAAATCCAGCGAGAT
rJMSF038K08+          ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
                      ____________________________________________________________
consensus             ACGCAAAATCCTGATGAGCGTTTGGATCAGCATACACAAGACAAACAAATCCAGCGAGAT
 
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rJMSF044I15+          GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
rJMSF004E02+          GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
rJMSF019C22+          GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
rJMSF006F07+          GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
rJMSF038K08+          GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
                      ____________________________________________________________
consensus             GATGAATATTATGAAGGTGACAATGACAATGATCACTCCATGGATGATGCATGATGAGCT
 
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rJMSF044I15+          ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
rJMSF004E02+          ATTACCTACCTCCTTGGAGGGATTNCTAGGTTCAGACTTGATTAGGTAAA          
rJMSF019C22+          ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
rJMSF006F07+          ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
rJMSF038K08+          ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
                      ____________________________________________________________
consensus             ATTACCTACCTCCTTGGAGGGATTACTAGGTTCAGACTTGATTAGGTAAATGTAAATCTA
 
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rJMSF044I15+          TAT-TGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCTAATGTTGTTTTTGTGTCC  
rJMSF019C22+          TAT-TGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCT                    
rJMSF006F07+          TATCTGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCT                    
rJMSF038K08+          TAT-TGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCTAATGTTGTTTTTGTGTCCTT
                      ____________________________________________________________
consensus             TAT-TGTTTTGCCTCAGAAAGAGGGAATTATAACCATTCTAATGTTGTTTTTGTGTCCTT