Contig 013857:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031P01Sequence453006601 (9)658013857 (9)
JMFF038L23Sequence136006601 (9)710013857 (9)ref|XP_011029902.1|66.6PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMFF044G16Sequence614006601 (9)611013857 (9)
JMFF048J21Sequence464006601 (9)443013857 (9)
JMFF050C24Sequence603006601 (9)644013857 (9)
JMFF050I23Sequence615006601 (9)551013857 (9)
JMSF008G19Sequence319006601 (9)700013857 (9)ref|XP_011029902.1|66.6PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMSF011J24Sequence236006601 (9)770013857 (9)ref|XP_011029902.1|98.2PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]
JMSF034E18Sequence512006601 (9)770013857 (9)ref|XP_011029902.1|95.5PREDICTED: uncharacterized protein LOC105129478 [Populus euphratica]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF034E18+ ATGCCGCTT
rJMSF011J24+ AGCAGAACTTATGCCGCTT
                      ____________________________________________________________
consensus AGCAGAACTTATGCCGCTT
 
. : . : . : . : . : . :
rJMSF008G19+ TATACCAGAGAAAG
rJMSF034E18+ CCTCCANGGAGATCCTTCGCTTACTTGCAAGCAAAGTGGGAGTCTATATACCAGAGAAAG
rJMSF011J24+ CCTCCATGGAGATCCTTCGCTTACNTGCAAGCAAAGTGGGAGTCTATATACCAGAGAAAG
rJMFF038L23+ TATACCAGAGAAAG
                      ____________________________________________________________
consensus CCTCCATGGAGATCCTTCGCTTACTTGCAAGCAAAGTGGGAGTCTATATACCAGAGAAAG
 
. : . : . : . : . : . :
rJMSF008G19+ TTCAACCCCGACAATCCAAACATGATCCGATCTTTCGCTTCCCATCACATACAGTGCGTA
rJMSF034E18+ TTCAACCCCGACAATCCAAACATGATCCGATCTTTCGCTTCCCATCACATACAGTGCGTA
rJMSF011J24+ TTCAACCCCGACAATCCAAACATGATCCGATCCTTCGCTTCCCATCACATACAGTGCGTA
rJMFF038L23+ TTCAACCCGGACAATCCAAACATGATCCGATCTTTCGCTTCCCATCACATACAGTGCGTA
                      ____________________________________________________________
consensus TTCAACCCCGACAATCCAAACATGATCCGATCTTTCGCTTCCCATCACATACAGTGCGTA
 
. : . : . : . : . : . :
rJMSF008G19+ CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
rJMSF034E18+ CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
rJMSF011J24+ CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
rJMFF038L23+ CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
rJMFF031P01+ TCCAACCCAATACTGAAGTAGAACGTATACTC
                      ____________________________________________________________
consensus CCTCATCTAAAGCGACTGCAATCCACACTCCAACCCAATACTGAAGTAGAACGTATACTC
 
. : . : . : . : . : . :
rJMSF008G19+ AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMSF034E18+ AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMSF011J24+ AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMFF038L23+ AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMFF031P01+ AGGCCTGTAAACAGCGACAGGCCACGGTTGAACCTCGGGAGGCGGAGGCGANCCTCTTTC
rJMFF044G16+ AAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
rJMFF050C24+ ACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
                      ____________________________________________________________
consensus AGGCCTGTAAACAGCGACAGGCCACGGCTGAACCTCGGGAGGCGGAGGCGACCCTCTTTC
 
. : . : . : . : . : . :
rJMSF008G19+ CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMSF034E18+ CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMSF011J24+ CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF038L23+ CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF031P01+ CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF044G16+ CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF050I23+ ATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
rJMFF050C24+ CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
                      ____________________________________________________________
consensus CTGGCTCTATGAGATCCCCAATAAAACTCCAACAAGGTGATTCTTTCCCTATTTTGAATA
 
. : . : . : . : . : . :
rJMSF008G19+ AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMSF034E18+ AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMSF011J24+ AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF038L23+ AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF031P01+ AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF044G16+ AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF048J21+ TCCA
rJMFF050I23+ AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
rJMFF050C24+ AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
                      ____________________________________________________________
consensus AGTTCTCTGGACAAGAAACAGAAAACCAGTTTCACATTATACCTGACATCAAGAGATCCA
 
. : . : . : . : . : . :
rJMSF008G19+ AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMSF034E18+ AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMSF011J24+ AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF038L23+ AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF031P01+ AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF044G16+ AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF048J21+ AGACAATGAAGTTGATTNATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF050I23+ AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
rJMFF050C24+ AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
                      ____________________________________________________________
consensus AGACAATGAAGTTGATTTATATATACATACATAAATAGAATTTCATCATCTTCTTGACTT
 
. : . : . : . : . : . :
rJMSF008G19+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMSF034E18+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMSF011J24+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF038L23+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF031P01+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTN
rJMFF044G16+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF048J21+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF050I23+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
rJMFF050C24+ TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
                      ____________________________________________________________
consensus TAAACCACGGAAGAAAGAAGACCCTGAGGTTTATGCAATTCCTGGTTGATTTTCCCACTA
 
. : . : . : . : . : . :
rJMSF008G19+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMSF034E18+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMSF011J24+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF038L23+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF031P01+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF044G16+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF048J21+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF050I23+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
rJMFF050C24+ CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
                      ____________________________________________________________
consensus CTATACAGCAGAGCAGTACAACAATATGGTATTCCACTAATCTGATTGGTGCTCAACAAA
 
. : . : . : . : . : . :
rJMSF008G19+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMSF034E18+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMSF011J24+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF038L23+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF031P01+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF044G16+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF048J21+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF050I23+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
rJMFF050C24+ ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
                      ____________________________________________________________
consensus ATGAATGGAGCATTATTCATTAGATAGAGAGGTACTATACTATAATATACTATAATACAG
 
. : . : . : . : . : . :
rJMSF008G19+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMSF034E18+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMSF011J24+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF038L23+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF031P01+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTNTGGGAATAATGTCTTTTTCCC
rJMFF044G16+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF048J21+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF050I23+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
rJMFF050C24+ TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
                      ____________________________________________________________
consensus TATATTTTTTCTTATGTTCTTTGGTCAATTTCTCAGGTCTGGGAATAATGTCTTTTTCCC
 
. : . : . : . : . : . :
rJMSF008G19+ TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMSF034E18+ TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMSF011J24+ TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF038L23+ TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF031P01+ TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGNTGGTGATTTATTATTGTTAT
rJMFF044G16+ TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF048J21+ TTTNATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF050I23+ TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
rJMFF050C24+ TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
                      ____________________________________________________________
consensus TTTTATCTATTCAATTGTGAATTGTAGTAGTCAATATAGTTGGTGATTTATTATTGTTAT
 
. : . : . : . : . : . :
rJMSF008G19+ TATATATACC
rJMSF034E18+ TATATATACCAGTGGGATCTGTAATGTTCTC
rJMSF011J24+ TATATATACCAGTGGGATCTGTAATGTTCTC
rJMFF038L23+ TATATATACCAGTGGGATCTGTAATGTTCTCA
rJMFF031P01+ TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAAAT
rJMFF044G16+ TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAGAT
rJMFF048J21+ TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAAAT
rJMFF050I23+ TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAGAT
rJMFF050C24+ TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAGAT
                      ____________________________________________________________
consensus TATATATACCAGTGGGATCTGTAATGTTCTCACGGTGACTGTTATTTCAGTCAGCAAGAT
 
. : . : . : . : . : . :
rJMFF031P01+ AAAAATAAAATTTAAGAG
rJMFF044G16+ AAAAATAAAATTTAAGAGC
rJMFF048J21+ AAAAATAAAATTTAAGAGC
rJMFF050I23+ AAAAATAAAATTTAAGAGC
rJMFF050C24+ AAAAATAAAATTTAAGAGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus AAAAATAAAATTTAAGAGCAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG