Contig 013853:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF012L09Sequence533013853 (9)gb|EYU33869.1|8e-35hypothetical protein MIMGU_mgv1a010099mg [Erythranthe guttata]794013853 (9)ref|NP_001234183.1|5e-88plastid lipid associated protein CHRC [Solanum lycopersicum] gb|ABC42191.1| plas
JMFF020P02Sequence534013853 (9)ref|NP_001234183.1|2e-47plastid lipid associated protein CHRC [Solanum lycopersicum] gb|ABC42191.1| plas
JMFF023L18Sequence748013853 (9)ref|NP_001275061.1|4e-139light-induced protein, chloroplastic [Solanum tuberosum] sp|P80471.2|LIPC_SOLTU
JMFF029D17Sequence527013853 (9)ref|NP_001234183.1|9e-46plastid lipid associated protein CHRC [Solanum lycopersicum] gb|ABC42191.1| plas758013853 (9)ref|NP_001275061.1|2e-134light-induced protein, chloroplastic [Solanum tuberosum] sp|P80471.2|LIPC_SOLTU
JMFF038H21Sequence453013853 (9)ref|NP_001234183.1|7e-29plastid lipid associated protein CHRC [Solanum lycopersicum] gb|ABC42191.1| plas779013853 (9)ref|NP_001275061.1|4e-132light-induced protein, chloroplastic [Solanum tuberosum] sp|P80471.2|LIPC_SOLTU
JMFF049M20Sequence472013853 (9)ref|XP_009783682.1|1e-22PREDICTED: light-induced protein, chloroplastic-like [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF029D17- ATTCTGTTTTCTCATAGGCATCGAATTT
JMFF038H21- ATTCTGTTTTCTCATAGGCATCGAATTT
JMFF020P02- ATTCTGNTTTCTCATAGGCATCGAATTT
JMFF012L09- ATTCTGTTTTCTCATAGGCATCGAATTT
                      ____________________________________________________________
consensus ATTCTGTTTTCTCATAGGCATCGAATTT
 
. : . : . : . : . : . :
JMFF029D17- CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
JMFF038H21- CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
JMFF020P02- CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
JMFF012L09- CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
                      ____________________________________________________________
consensus CAGCGCTCGAAACTGATCAAAAATGGCGTCGATTTCATCTTTCACTCAATTCCATTGCAA
 
. : . : . : . : . : . :
JMFF029D17- ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCCGGT
JMFF038H21- ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCCGGT
JMFF020P02- ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCCGGT
JMFF012L09- ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCC-GT
                      ____________________________________________________________
consensus ACCCGTCGGTATGATCTGTCCACGATCCTCATCCACCCCGAAACCCTCTGTATTTCCGGT
 
. : . : . : . : . : . :
JMFF029D17- GAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
JMFF038H21- GAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
JMFF020P02- GAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
JMFF012L09- AAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
                      ____________________________________________________________
consensus GAATTCGACGATTTTCGCGTCGAAAGTGGCCGCATTGAGGTCATTCCCGAACAGGGGATT
 
. : . : . : . : . : . :
JMFF029D17- GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
JMFF038H21- GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
JMFF020P02- GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
JMFF012L09- GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
                      ____________________________________________________________
consensus GGCGAACCCGAATAGGAAATTCGTCGTCCGGGCCGTTAGCGATGATGAGTGGGGCGAGGA
 
. : . : . : . : . : . :
JMFF029D17- AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAAGACGAACCGGC
JMFF038H21- AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAAGACGAACCGGC
JMFF020P02- AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAAGACGAACCGGC
JMFF012L09- AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAANACGAACCGGC
                      ____________________________________________________________
consensus AAAAAAGGAGCCTCTGTCCGCAGCTCCGGCGGGCGTCGCAGTGGTAGAAGACGAACCGGC
 
. : . : . : . : . : . :
JMFF029D17- CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCTTTCTACGGGACCAA
JMFF038H21- CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCTTTCTACGGGACCAA
JMFF020P02- CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCTTTCTACGGGACCAA
JMFF012L09- CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCNTTCTACGGGACCAA
rJMFF023L18+ GCTGACTGAAACCGATGTGTNGAAGAANCAGCTGGTGGATTCTTTNTACGGGACCAA
rJMFF029D17+ TACGGGACCAA
rJMFF038H21+ CAA
                      ____________________________________________________________
consensus CGCGCTGACTGAAACCGATGTGTTGAAGAAACAGCTGGTGGATTCTTTCTACGGGACCAA
 
. : . : . : . : . : . :
JMFF029D17- TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGAAGCT
JMFF038H21- TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
JMFF020P02- TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
JMFF012L09- TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
rJMFF023L18+ TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
rJMFF029D17+ TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGAAGCT
rJMFF038H21+ TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
                      ____________________________________________________________
consensus TAGAGGATTGAGCGCTAGCAGCGAGACTAGGGCGGAGGTCGTCGAGCTTATCACGCAGCT
 
. : . : . : . : . : . :
JMFF029D17- GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
JMFF038H21- GGAGG
JMFF020P02- GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
JMFF012L09- GGAGGCTAAGNACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGNCAAATG
rJMFF023L18+ GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
rJMFF029D17+ GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
rJMFF038H21+ GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
rJMFF012L09+ ACGGAGGCGCTGACTCTCNTCAACGGCAAATG
                      ____________________________________________________________
consensus GGAGGCTAAGAACCCGACTCCGGCGCCCACGGAGGCGCTGACTCTCCTCAACGGCAAATG
 
. : . : . : . : . : . :
JMFF029D17- GGTTCTTGCGTACACGTCT
JMFF020P02- GGTTCTTGCGTACACGTCTTTTATTG
JMFF012L09- GGTTCTTGCGTACACGTCTTTTATTG
rJMFF023L18+ GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
rJMFF029D17+ GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
rJMFF038H21+ GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
rJMFF012L09+ GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
                      ____________________________________________________________
consensus GGTTCTTGCGTACACGTCTTTTATTGGGTTGTTCCCATTGTTATCAAGGGGCACACTCCC
 
. : . : . : . : . : . :
rJMFF023L18+ TCT-GGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
rJMFF029D17+ TCT-GGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
rJMFF038H21+ TCT-GGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
rJMFF012L09+ TCTGGGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
                      ____________________________________________________________
consensus TCT-GGTCAGAGTTGAAGAAATATGTCAAACCATTGATTCAGAAAGCTTCACTGTTCAGA
 
. : . : . : . : . : . :
rJMFF023L18+ ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
rJMFF029D17+ ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
rJMFF038H21+ ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
rJMFF012L09+ ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
                      ____________________________________________________________
consensus ACTCTGTTGTGTTTTCTGGACCATTGGCTACCACTTCCATTAGTACCAATGCCAAGTTTG
 
. : . : . : . : . : . :
rJMFF023L18+ AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
rJMFF029D17+ AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
rJMFF038H21+ AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
rJMFF012L09+ AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
                      ____________________________________________________________
consensus AAGTCCGAAGCCCTAAGCGTGTGCAGATAAAGTTTGAAGAAGGCATTATTGGGACTCCAC
 
. : . : . : . : . : . :
rJMFF023L18+ AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
rJMFF029D17+ AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
rJMFF038H21+ AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
rJMFF012L09+ AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
                      ____________________________________________________________
consensus AGCTGACAGATTCCATTGTGTTACCTGAGAATGTAGAATTTTTGGGACAAAAGATTGATC
 
. : . : . : . : . : . :
rJMFF023L18+ TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
rJMFF029D17+ TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
rJMFF038H21+ TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
rJMFF012L09+ TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
rJMFF049M20+ TTCAAAGGTTTGATTCATTCTCTTCAGGATGGGGCTTCTTCAGTTGTGAAGT
                      ____________________________________________________________
consensus TCACCCCTTTCAAAGGTTTGATTACTTCTCTCCAGGATACGGCTTCCTCAGTTGTGAAGT
 
. : . : . : . : . : . :
rJMFF023L18+ CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
rJMFF029D17+ CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
rJMFF038H21+ CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
rJMFF012L09+ CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
rJMFF049M20+ CCATTTCTAGCCATCCGCCATAGAAGTTTTCCCGAGCCAATAGCAATGGTGAGTCGTGGC
                      ____________________________________________________________
consensus CCATCTCTAGCCAACCGCCATTGAAGTTTTCCCTTGCCAATAGCAATGCTGAGTCCTGGC
 
. : . : . : . : . : . :
rJMFF023L18+ TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
rJMFF029D17+ TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
rJMFF038H21+ TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
rJMFF012L09+ TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
rJMFF049M20+ TTTTAATTGCGTATCTGGACAGAGAGGTTGGGATTTCAAGAGGAGAGTTGGGCAGTATTT
                      ____________________________________________________________
consensus TTTTAACTACCTACCTGGACAGCGAGCTTCGGATTTCAAGAGGAGAGGCGGGCAGTATCT
 
. : . : . : . : . : . :
rJMFF023L18+ TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
rJMFF029D17+ TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
rJMFF038H21+ TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
rJMFF012L09+ TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
rJMFF049M20+ TTGTGGTGATCAAGGAAGGCATCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTTTTT
                      ____________________________________________________________
consensus TTGTGCTGATCAAGGAAGACAGCCCCCTCTTGAAGCCTTAGACTAATTCCAGAATTATTT
 
. : . : . : . : . : . :
rJMFF023L18+ TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTT
rJMFF029D17+ TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTTGTACTTGTACTTCTGAATGTGAAAAATG
rJMFF038H21+ TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTTGTACTTGTACTTCTGAATGTGAAAAATG
rJMFF012L09+ TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTTGTACTTGTACTTCTGAATGTGAAAAATG
rJMFF049M20+ TGTTTTAGTATGTCCCCTGCCTTTCAAGCCTTGTATTTGTAATTAAGAATGTGAAAAATG
                      ____________________________________________________________
consensus TCTTCTAGTATGTCCCCTGCCTTTCAAGCCTTGTACTTGTACTTCTGAATGTGAAAAATG
 
. : . : . : . : . : . :
rJMFF029D17+ GTCTAAATGAGCCAAATAAACTGCTAGT
rJMFF038H21+ GTCTAAATGAGCCAAATAAACTGCTAGTTGTTATTCGTAGGCTTGTTAATGAAATCC
rJMFF012L09+ GTCTAAATGAGCCAAATAAACTGCTAGTTGTTATTCGTAGGCTTGTTAATGAAATCCATC
rJMFF049M20+ GTTTAAAGGAGCCAAATAACCTGCTAGTTGTTATTCGTAGGCTTGTTAAAGAAATCCATC
                      ____________________________________________________________
consensus GTCTAAATGAGCCAAATAAACTGCTAGTTGTTATTCGTAGGCTTGTTAATGAAATCCATC
 
. : . : . : . : . : . :
rJMFF012L09+ ATATTTGTTCAGAAATCTTGGATGCATTGAATTAGAAGATTTACTAGGGTGGACAGAAGT
rJMFF049M20+ ATATTGGTTCAGAAATATTGGATGCATTGAATTTGAAGATTTTATGGGGTGGACAGAAGT
                      ____________________________________________________________
consensus ATATTTGTTCAGAAATCTTGGATGCATTGAATTTGAAGATTTTCTGGGGTGGACAGAAGT
 
. : . : . : . : . : . :
rJMFF012L09+ GTTGCTAAAAAAAATCACATTTATATGATGAAAGATTCAGTT
rJMFF049M20+ GTTGTTAAAAAAAATCACATTTATTTGACGAAAGATTCAGTTTTGAACTGTTGGTTTGTC
                      ____________________________________________________________
consensus GTTGTTAAAAAAAATCACATTTATTTGATGAAAGATTCAGTTTTGAACTGTTGGTTTGTC