Contig 013814:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018G02Sequence509003892 (6)ref|XP_006357482.1|1e-69PREDICTED: transcription factor SPT20 homolog [Solanum tuberosum]710013814 (6)ref|XP_009628597.1|4e-35PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMFF044H10Sequence627003892 (6)ref|XP_006367642.1|4e-91PREDICTED: adenylate cyclase, terminal-differentiation specific-like [Solanum t552013814 (6)ref|XP_009628597.1|1e-29PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF018K17Sequence575003892 (6)ref|XP_009782976.1|2e-07PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve785013814 (6)ref|XP_004248167.1|5e-67PREDICTED: bromodomain-containing protein 4 [Solanum lycopersicum]
JMSF024K20Sequence631003892 (6)ref|XP_006367642.1|7e-93PREDICTED: adenylate cyclase, terminal-differentiation specific-like [Solanum t761013814 (6)ref|XP_004248167.1|3e-62PREDICTED: bromodomain-containing protein 4 [Solanum lycopersicum]
JMSF038L23Sequence719003892 (6)ref|XP_009628959.1|1e-74PREDICTED: extensin-like [Nicotiana tomentosiformis]841013814 (6)ref|XP_009628597.1|5e-75PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]
JMSF049B10Sequence699003892 (6)ref|XP_009782976.1|7e-24PREDICTED: vacuolar protein sorting-associated protein 27-like [Nicotiana sylve800013814 (6)ref|XP_009628597.1|2e-73PREDICTED: ataxin-2 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF049B10+ CAAATAACATGTCAATGCAAGTG
rJMSF038L23+ TTCCGAGATGGTTCCAAATAACATGTCAATGCAAGTG
                      ____________________________________________________________
consensus TTCCGAGATGGTTCCAAATAACATGTCAATGCAAGTG
 
. : . : . : . : . : . :
rJMSF049B10+ CCTTTCTCTGGAATGACTCAAACAGTCGCTAGCCGCCCCGAGGGAATGCCGTATGGTAGC
rJMSF038L23+ CCTTTCTCTGGAATGACTCAAACAGTCGCTAGCCGCCCCGAGGGAATGCCGTATGGTAGC
rJMSF018K17+ TGACTCAAACAGTCGCTAGCCGCCCCGAGGGAATGCCGTATGGTAGC
rJMSF024K20+ GGGAATGCCGTATGGTAGC
                      ____________________________________________________________
consensus CCTTTCTCTGGAATGACTCAAACAGTCGCTAGCCGCCCCGAGGGAATGCCGTATGGTAGC
 
. : . : . : . : . : . :
rJMSF049B10+ GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
rJMSF038L23+ GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
rJMSF018K17+ GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
rJMSF024K20+ GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
                      ____________________________________________________________
consensus GGTGTTGCCAGCAGGCCAGTTCAGCCGCAGGCACCCGGTCAGCATCTCAAGCCTGCATTT
 
. : . : . : . : . : . :
rJMSF049B10+ TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
rJMSF038L23+ TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
rJMSF018K17+ TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
rJMSF024K20+ TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
rJMFF018G02+ CCCCCGGGGATGGNTACGGGGTAAGTGGACCACACCCATTCGTTTGCCCCCGGAAA
                      ____________________________________________________________
consensus TGTGCCCCCGGGGATGGCTACGGGGTAAGTGGACCACACCCA-TCGTTTGCCCCCGGAAA
 
. : . : . : . : . : . :
rJMSF049B10+ TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
rJMSF038L23+ TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
rJMSF018K17+ TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
rJMSF024K20+ TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
rJMFF018G02+ TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCACCCCCAACAACCTATCT
                      ____________________________________________________________
consensus TGCTTATGTAATGTATGACAGTGAAGGACCGAGGGGTCATCCA-CCCCAACAACCTATCT
 
. : . : . : . : . : . :
rJMSF049B10+ TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMSF038L23+ TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMSF018K17+ TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMSF024K20+ TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMFF018G02+ TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
rJMFF044H10+ CCACAGCCTGCCA
                      ____________________________________________________________
consensus TCCCCCAAGGCGCTTATCCTCCATCCAGCTTCTCTCTCGCAAATCCACCACAGCCTGCCA
 
. : . : . : . : . : . :
rJMSF049B10+ ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMSF038L23+ ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMSF018K17+ ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMSF024K20+ ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMFF018G02+ ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
rJMFF044H10+ ACANTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
                      ____________________________________________________________
consensus ACACTAATGTAATGGTTCGTCCACCACAAGGCATGCGCAACCCCCCTCCCTACAACGAGC
 
. : . : . : . : . : . :
rJMSF049B10+ TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMSF038L23+ TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMSF018K17+ TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMSF024K20+ TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMFF018G02+ TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
rJMFF044H10+ TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
                      ____________________________________________________________
consensus TGGTTGAGAAACTGGCAAGCATGGGTTACAGGGTGGATCACATTATTAACGTGATCCAGA
 
. : . : . : . : . : . :
rJMSF049B10+ GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
rJMSF038L23+ GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
rJMSF018K17+ GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
rJMSF024K20+ GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
rJMFF018G02+ GGATGGAGGAGAGCGGTCAGCCTGTTGATTNCAACGCTGTGCTCGATCGACTAAACGGAC
rJMFF044H10+ GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
                      ____________________________________________________________
consensus GGATGGAGGAGAGCGGTCAGCCTGTTGATTTCAACGCTGTGCTCGATCGACTAAACGGAC
 
. : . : . : . : . : . :
rJMSF049B10+ ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMSF038L23+ ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMSF018K17+ ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMSF024K20+ ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMFF018G02+ ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
rJMFF044H10+ ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
                      ____________________________________________________________
consensus ATTCCTCCGGAGGCTCTCAGAAAGGATGGTAAAGGTGAGTAACCATCTGAACCTATCTAG
 
. : . : . : . : . : . :
rJMSF049B10+ TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMSF038L23+ TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMSF018K17+ TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMSF024K20+ TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMFF018G02+ TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
rJMFF044H10+ TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
                      ____________________________________________________________
consensus TTGTCTGGATTGGTTCTCGCAGAGATCGAGACACTCGCTCAATCGTCTTAGCCCATCATC
 
. : . : . : . : . : . :
rJMSF049B10+ GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMSF038L23+ GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMSF018K17+ GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMSF024K20+ GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMFF018G02+ GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
rJMFF044H10+ GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
                      ____________________________________________________________
consensus GTTGTGATCTATCTATGCACGACATGGGTTGACTATACATCGCATTAAATTAAATTCTCT
 
. : . : . : . : . : . :
rJMSF049B10+ ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMSF038L23+ ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMSF018K17+ ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMSF024K20+ ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMFF018G02+ ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
rJMFF044H10+ ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
                      ____________________________________________________________
consensus ATGAATGTGATTGGAATTCGGTATATATTTGATCAAGAGATGCACAGTATTATTTGTCTG
 
. : . : . : . : . : . :
rJMSF049B10+ TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGT
rJMSF038L23+ TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTANCATGGTTGTAACCTTAACTGCTGT
rJMSF018K17+ TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
rJMSF024K20+ TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
rJMFF018G02+ TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
rJMFF044H10+ TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
                      ____________________________________________________________
consensus TCATCTCTTTCCCAGCTTTCTTACATAGTTGTTTA-CATGGTTGTAACCTTAACTGCTGT
 
. : . : . : . : . : . :
rJMSF038L23+ GTTTTTCTGCAAGCAGAAA
rJMSF018K17+ GTTTTTCTGCAAGCAGAAACC
rJMSF024K20+ GTTTTTCTGCAAGCAGAAACC
rJMFF018G02+ GTTTTTCTGCAAGCAGAAACCTTGTTGGATATCTA
rJMFF044H10+ GTTTTTCTGCAAGCAGAAACCTTGTTGGATATCTATTGCATTTGACCTTTATTTTGTCTC
                      ____________________________________________________________
consensus GTTTTTCTGCAAGCAGAAACCTTGTTGGATATCTATTGCATTTGACCTTTATTTTGTCTC