| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF034F07 | Sequence | 569 | 004906 (11) | ref|XP_004241792.1| | 1e-81 | PREDICTED: trafficking protein particle complex subunit 9 isoform X1 [Solanum l | 748 | 013756 (7) | ref|XP_007011772.1| | 8e-92 | TRS120 isoform 1 [Theobroma cacao] gb|EOY29391.1| TRS120 isoform 1 [Theobroma ca |
| JMSF001F12 | Sequence | 382 | 004906 (11) | ref|XP_009778819.1| | 3e-40 | PREDICTED: trafficking protein particle complex subunit 9 isoform X2 [Nicotiana | 706 | 013756 (7) | ref|XP_007011772.1| | 4e-90 | TRS120 isoform 1 [Theobroma cacao] gb|EOY29391.1| TRS120 isoform 1 [Theobroma ca |
| JMSF009D17 | Sequence | 594 | 013756 (7) | ref|XP_007011772.1| | 1e-61 | TRS120 isoform 1 [Theobroma cacao] gb|EOY29391.1| TRS120 isoform 1 [Theobroma ca | |||||
| JMSF016I20 | Sequence | 496 | 004906 (11) | ref|XP_004241792.1| | 3e-50 | PREDICTED: trafficking protein particle complex subunit 9 isoform X1 [Solanum l | 710 | 013756 (7) | ref|XP_007011772.1| | 2e-88 | TRS120 isoform 1 [Theobroma cacao] gb|EOY29391.1| TRS120 isoform 1 [Theobroma ca |
| JMSF024A02 | Sequence | 606 | 004906 (11) | ref|XP_004241792.1| | 1e-85 | PREDICTED: trafficking protein particle complex subunit 9 isoform X1 [Solanum l | 670 | 013756 (7) | ref|XP_007011772.1| | 5e-81 | TRS120 isoform 1 [Theobroma cacao] gb|EOY29391.1| TRS120 isoform 1 [Theobroma ca |
| JMSF030M03 | Sequence | 654 | 004906 (11) | ref|XP_009618489.1| | 2e-105 | PREDICTED: trafficking protein particle complex subunit 9 isoform X2 [Nicotiana | 704 | 013756 (7) | ref|XP_007011772.1| | 2e-89 | TRS120 isoform 1 [Theobroma cacao] gb|EOY29391.1| TRS120 isoform 1 [Theobroma ca |
| JMSF042I19 | Sequence | 609 | 004906 (11) | ref|XP_004241792.1| | 1e-85 | PREDICTED: trafficking protein particle complex subunit 9 isoform X1 [Solanum l | 396 | 013756 (7) | ref|XP_010322725.1| | 3e-51 | PREDICTED: uncharacterized protein LOC101266526 isoform X2 [Solanum lycopersicu |
This contig is upended
. : . : . : . : . : . :
rJMSF030M03+ AAGTCAGGTGGCAATCTG
rJMSF001F12+ AAGTCAGGTGGCAATCTG
rJMSF016I20+ AAGTCAGGTGNCAATCTG
rJMFF034F07+ TCTCGGATTAAAGTCAGGTGGCAATCTG
____________________________________________________________
consensus TCTCGGATTAAAGTCAGGTGGCAATCTG
. : . : . : . : . : . :
rJMSF030M03+ GACGGAATAGCTCAGGAGAACTAAATATCAAGGATGCAATACAGGCTGCTTTACAGTCAT
rJMSF009D17+ TCAAGGATGCAATACAGGCTGCTNTACAGTCAT
rJMSF001F12+ GACGGAATAGCTCAGGAGAACTAAATATCAAGGATGCAATACAGGCTGCTTTACAGTCAT
rJMSF016I20+ GACGGAATAGCTCAGGAGAACTAAATATCAAGGATGCAATACAGGCTGCTTTACAGTCAT
rJMSF024A02+ GAACTAAATATCAAGGATGCAATACAGGCTGCTTTACAGTCAT
rJMFF034F07+ GACGGAATAGCTCAGGAGAACTAAATATCAAGGATGCAATACAGGCTGCTTTACAGTCAT
____________________________________________________________
consensus GACGGAATAGCTCAGGAGAACTAAATATCAAGGATGCAATACAGGCTGCTTTACAGTCAT
. : . : . : . : . : . :
rJMSF030M03+ CTGTGATGGATGTACTGCTACCAGATCCACTAACCTTTGGATTTTCTCTCGCAAAAAATG
rJMSF009D17+ CTGNGATGGATGTACTGCTACCAGATCCACTAACCTTTGGATTTTCTCTCGCAAAAAATG
rJMSF001F12+ CTGTGATGGATGTACTGCTACCAGATCCACTAACCTTTGGATTTTCTCTCGCAAAAAATG
rJMSF016I20+ CTGTGATGGATGTACTGCTACCAGATCCACTAACCTTTGGATTTTCTCTCGCAAAAAATG
rJMSF024A02+ CTGTGATGGATGTACTGCTACCAGATCCACTAACCTTTGGATTTTCTCTCGCAAAAAATG
rJMFF034F07+ CTGTGATGGATGTACTGCTACCAGATCCACTAACCTTTGGATTTTCTCTCGCAAAAAATG
____________________________________________________________
consensus CTGTGATGGATGTACTGCTACCAGATCCACTAACCTTTGGATTTTCTCTCGCAAAAAATG
. : . : . : . : . : . :
rJMSF030M03+ GTTCACCGGAAATTGATGTGCCCAAGGAATTTGACATGCAAAATAATTCCCTTGCATGTA
rJMSF009D17+ GTTCACCGGAAATTGATGTGCCCAAGGAATTNGACATGCAAAATAATTCCCNTGCATGTA
rJMSF001F12+ GTTCACCGGAAATTGATGTGCCCAAGGAATTTGACATGCAAAATAATTCCCTTGCATGTA
rJMSF016I20+ GTTCACCGGAAATTGATGTGCCCAAGGAATTTGACATGCAAAATAATTCCCTTGCATGTA
rJMSF042I19+ CATGCAAAATAATTCCCTTGCATGNA
rJMSF024A02+ GTTCACCGGAAATTGATGTGCCCAAGGAATTTGACATGCAAAATAATTCCCTTGCATGTA
rJMFF034F07+ GTTCACCGGAAATTGATGTGCCCAAGGAATTTGACATGCAAAATAATTCCCTTGCATGTA
____________________________________________________________
consensus GTTCACCGGAAATTGATGTGCCCAAGGAATTTGACATGCAAAATAATTCCCTTGCATGTA
. : . : . : . : . : . :
rJMSF030M03+ AAAGTTCCGTTATTGCGCATGAGATGACACCAATGGAAGTCCTTGTACGGAATAATACAA
rJMSF009D17+ AAAGTTCCGTTATTGCGCATGAGATGACACCAATGGAAGTCCTTGTACGGAATAATACAA
rJMSF001F12+ AAAGTTCCGTTATTGCGCATGAGATGACACCAATGGAAGTCCTTGTACGGAATAATACAA
rJMSF016I20+ AAAGTTCCGTTATTGCGCATGAGATGACACCAATGGAAGTCCTTGTACGGAATAATACAA
rJMSF042I19+ AAAGTTCCGTTATTGCGCATGAGATGACNCCAATGGAAGTCNTNGTNCGGAATANTACAA
rJMSF024A02+ AAAGTTCCGTTATTGCGCATGAGATGACACCAATGGAAGTCCTTGTACGGAATAATACAA
rJMFF034F07+ AAAGTTCCGTTATTGCGCATGAGATGACACCAATGGAAGTCCTTGTACGGAATAATACAA
____________________________________________________________
consensus AAAGTTCCGTTATTGCGCATGAGATGACACCAATGGAAGTCCTTGTACGGAATAATACAA
. : . : . : . : . : . :
rJMSF030M03+ AAGAAACTATTAAATTAAGTCTTAGCATCACATGTCGAGACGTAGCTGGTGAAAACTGTG
rJMSF009D17+ AAGNAACTATTNAATTAAGTCTTAGCATCACATGTCNAGACGTAGCTGGTGANAACTGTG
rJMSF001F12+ AAGAAACTATTAAATTAAGTCTTAGCATCACATGTCGAGACGTAGCTGGTGAAAACTGTG
rJMSF016I20+ AAGAAACTATTAAATTAAGTCTTAGCATCACATGTCGAGACGTAGCTGGTGAAAACTGTG
rJMSF042I19+ AAGAAANTNCTAAATTACGTCTTAGCATCACATGTCGNGACGTAGNTGGTGAAAACTGTG
rJMSF024A02+ AAGAAACTATTAAATTAAGTCTTAGCATCACATGTCGAGACGTAGCTGGTGAAAACTGTG
rJMFF034F07+ AAGAAACTATTAAATTAAGTCTTAGCATCACATGTCGAGACGTAGCTGGTGAAAACTGTG
____________________________________________________________
consensus AAGAAACTATTAAATTAAGTCTTAGCATCACATGTCGAGACGTAGCTGGTGAAAACTGTG
. : . : . : . : . : . :
rJMSF030M03+ TGGAAGGCGACAAGACAACTGTGTTATGGGCAGGTGTTTTGAATGGTATTGCCATGGAGG
rJMSF009D17+ TGGAAGGCGACAAGACAACTGTGTTATGGGCAGGTGTTTCGAATGGTATTGCCATGGAGG
rJMSF001F12+ TGGAAGGCGACAAGACAACTGTGTTATGGGCAGGTGTTTTGAATGGTATTGCCATGGAGG
rJMSF016I20+ TGGAAGGCGACAAGACAACTGTGTTATGGGCAGGTGTTTTGAATGGTATTGCCATGGAGG
rJMSF042I19+ TGGAAGGCGACAAGACAACTGTGTTATGGGCAGGTGTTTTGAATGGTATTGCCATGGAGG
rJMSF024A02+ TGGAAGGCGACAAGACAACTGTGTTATGGGCAGGTGTTTTGAATGGTATTGCCATGGAGG
rJMFF034F07+ TGGAAGGCGACAAGACAACTGTGTTATGGGCAGGTGTTTTGAATGGTATTGCCATGGAGG
____________________________________________________________
consensus TGGAAGGCGACAAGACAACTGTGTTATGGGCAGGTGTTTTGAATGGTATTGCCATGGAGG
. : . : . : . : . : . :
rJMSF030M03+ TGCCCCCGCTCCAGGAAATCAAGCATTTCTTCTCCATGTATTTCCTGGTTCCAGGTGAGT
rJMSF009D17+ TGCCCCCGCTCCAGGAAATCAAGCATTTNTTCTCCATGTATTTCCTGGTTCCAGGTGAGT
rJMSF001F12+ TGCCCCCGCTCCAGGAAATCAAGCATTTCTTCTCCATGTATTTCCTGGTTCCAGGTGAGT
rJMSF016I20+ TGCCCCCGCTCCAGGAAATCAAGCATTTCTTCTCCATGTATTTCCTGGTTCCAGGTGAGT
rJMSF042I19+ TGCCCCCGCTCCAGGAAATCAAGCATTTCTTCTCCATGTATTTCCTGGNTCCAGGTGAGT
rJMSF024A02+ TGCCCCCGCTCCAGGAAATCAAGCATTTCTTCTCCATGTATTTCCTGGTTCCAGGTGAGT
rJMFF034F07+ TGCCCCCGCTCCAGGAAATCAAGCATTTCTTCTCCATGTATTTCCTGGTTCCAGGTGAGT
____________________________________________________________
consensus TGCCCCCGCTCCAGGAAATCAAGCATTTCTTCTCCATGTATTTCCTGGTTCCAGGTGAGT
. : . : . : . : . : . :
rJMSF030M03+ ATACGCTATTAGCTGCTGCTGCAATTGATGATGCTAATGAAATTCTCAGGGCCCGAGCAA
rJMSF009D17+ ATACGCTATTAGCTGNTGNTGCAATTGATGATGCTAANGAAATTCTCAGGGCCCGAGCAA
rJMSF001F12+ ATACGCTATTAGCTGCTGCTGCAATTGATGATGCTAATGAAATTCTCAGGGCCCGAGCAA
rJMSF016I20+ ATACGCTATTAGCTGCTGCTGCAATTGATGATGNTAATGAAATTCTCAGGGCCCGAGCAA
rJMSF042I19+ ATACGCNATTAGCTGNNGCTGCAATTGANGATGCTAATGAAATTCTCAGGGCCCGAGCAA
rJMSF024A02+ ATACGCTATTAGCTGCTGCTGCAATTGATGATGCTAATGAAATTCTCAGGGCCCGAGCAA
rJMFF034F07+ ATACGCTATTAGCTGCTGCTGCAATTGATGATGCTAATGAAATTCTCAGGGCCCGAGCAA
____________________________________________________________
consensus ATACGCTATTAGCTGCTGCTGCAATTGATGATGCTAATGAAATTCTCAGGGCCCGAGCAA
. : . : . : . : . : . :
rJMSF030M03+ GAGCAAGCTCAAGCGATGAGTCAATCTTTTGTCGTGGCCCGCCATTTCACATCAGAGTCA
rJMSF009D17+ GAGCAAGCTCAAGCGATGAGTCAATCTTTTGTNGTGGCCCGCCATTTCACATCAGAGTCA
rJMSF001F12+ GAGCAAGCTCAAGCGATGAGTCAATCTTTTGTCGTGGCCCGCCATTTCACATCAGAGTCA
rJMSF016I20+ GAGCAAGCTCAAGCGATGAGTCAATCTTTTGTCGTGGCCCGCCATTTCACATCAGAGTCA
rJMSF042I19+ GAGCAAGCTCAAGCGATGAGTCAATCTTTTGTCGTGGCCCGCCATTTCACATCNGAGTCA
rJMSF024A02+ GAGCAAGCTCAAGCGATGAGTCAATCTTTTGTCGTGGCCCGCCATTTCACATCAGAGTCA
rJMFF034F07+ GAGCAAGCTCAAGCGATGAGTCAATCTTTTGTCGTGGCCCGCCATTTCACATCAGAGTCA
____________________________________________________________
consensus GAGCAAGCTCAAGCGATGAGTCAATCTTTTGTCGTGGCCCGCCATTTCACATCAGAGTCA
. : . : . : . : . : . :
rJMSF030M03+ ATGGGACTCTCTGATTGTTGAGAGTTTTGTTTGTCCAATCTCTCTATTCTGAGCCATCCA
rJMSF009D17+ ATGGGACTCTCTGATTGNTGAGAGTTNTGTTTGTCCAATCTCTNTATTNTGAGCCNTCCA
rJMSF001F12+ ATGGGACTCTCTGATTGTTGAGAGTTTTGTTTGTCCAATCTCTCTATTCTGAGCCATCCA
rJMSF016I20+ ATGGGACTCTCTGATTGTTGAGAGTTTTGTTTGTCCAATCTCTCTATTCTGAGCCATCCA
rJMSF042I19+ ATGGG
rJMSF024A02+ ATGGGACTCCCTGATTGTTGAGAGTTTTGTTTGTCCAATCTCTCTATTCTGAGCCATCCA
rJMFF034F07+ ATGGGACTCTCTGATTGTTGAGAGTTTTGTTTGTCCAATCTCTCTATTCTGAGCCATCCA
____________________________________________________________
consensus ATGGGACTCTCTGATTGTTGAGAGTTTTGTTTGTCCAATCTCTCTATTCTGAGCCATCCA
. : . : . : . : . : . :
rJMSF030M03+ TAGTTATACCGGGCCTGGATTTCTTCCTAATTTGTTGTAAAGGAGTGCTCTATTGATACA
rJMSF009D17+ TAGTTATACCGGGCCTGGA
rJMSF001F12+ TAGTTATACCGGGCCTGGATTTCTTCCTAATTTGTTGTAAAGGAGTGCTCTATTGATACA
rJMSF016I20+ TAGTTATACCGGGCCTGGATTTCTTCCTAATTTGTTGTAAAGGAGTGCTCTATTGATACA
rJMSF024A02+ TAGTTATACCGGGCCTGGATTTCTTCCTAATTTGTTGTAAAGGAGTGCTCTATTGATACA
rJMFF034F07+ TAGTTATACCGGGCCTGGATTTCTTCCTAATTTGTTGTAAAGGAGTGCTCTATTGATACA
____________________________________________________________
consensus TAGTTATACCGGGCCTGGATTTCTTCCTAATTTGTTGTAAAGGAGTGCTCTATTGATACA
. : . : . : . : . : . :
rJMSF030M03+ ACTCCAAATAATGTTGGATTAAAATT
rJMSF001F12+ ACTCCAAATAATGTTGGATTAAAATT
rJMSF016I20+ ACTCCAAATAATGT
rJMSF024A02+ ACTCCAAATAATGTTGGATTAAAATT
rJMFF034F07+ ACTCCAAATAATGTTGGATTAAAATTGTGGATTAACATTTGTAATGCATATGAAGAACAC
____________________________________________________________
consensus ACTCCAAATAATGTTGGATTAAAATTGTGGATTAACATTTGTAATGCATATGAAGAACAC