clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF019G11 | Sequence | 487 | 006482 (7) | 679 | 013691 (4) | ref|XP_009603675.1| | 5e-73 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | |||
JMSF018O09 | Sequence | 325 | 006482 (7) | 771 | 013691 (4) | ref|XP_009603675.1| | 1e-96 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] | |||
JMSF020B22 | Sequence | 654 | 006482 (7) | gb|KDO76504.1| | 2e-27 | hypothetical protein CISIN_1g0134021mg, partial [Citrus sinensis] | 775 | 013691 (4) | ref|XP_009603675.1| | 2e-101 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] |
JMSF053K03 | Sequence | 642 | 006482 (7) | gb|KDO76504.1| | 3e-35 | hypothetical protein CISIN_1g0134021mg, partial [Citrus sinensis] | 896 | 013691 (4) | ref|XP_009603675.1| | 4e-123 | PREDICTED: probable polygalacturonase [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
rJMSF053K03+ TTTATTGCAGCAAT
____________________________________________________________
consensus TTTATTGCAGCAAT
. : . : . : . : . : . :
rJMSF053K03+ GTTGTTGTTCGATATGTCACCCATACTGGCTCCTACTGATTCTCCGAACACTGATGGAAT
____________________________________________________________
consensus GTTGTTGTTCGATATGTCACCCATACTGGCTCCTACTGATTCTCCGAACACTGATGGAAT
. : . : . : . : . : . :
rJMSF020B22+ CCACGGGGGACGA
rJMSF053K03+ TGATCCTGATTCAAGCTCTCATGTCTGCATTGAGGACTCGTATATTTCCACGGGGGACGA
____________________________________________________________
consensus TGATCCTGATTCAAGCTCTCATGTCTGCATTGAGGACTCGTATATTTCCACGGGGGACGA
. : . : . : . : . : . :
rJMSF020B22+ CCTAGTGGCTGTGAAGAGCGGGTGGGATGAGTATGGCATTGCCTATGGGCGCCCGAGCCA
rJMSF053K03+ CCTAGTGGCTGTGAAGAGCGGGTGGGATGAGTATGGCATTGCCTATGGGCGCCCGAGCCA
rJMSF018O09+ GCTGTGAAGAGCGGGTGGGATGAGTATGNCATTGCCTATGGGCGCCCGAGCCA
____________________________________________________________
consensus CCTAGTGGCTGTGAAGAGCGGGTGGGATGAGTATGGCATTGCCTATGGGCGCCCGAGCCA
. : . : . : . : . : . :
rJMSF020B22+ CGGCATTACCATACGCAGGGTGACTGGATCTTCCCCGTTTGCTGGAATTGCTGTTGGAAG
rJMSF053K03+ CGGCATTACCATACGCAGGGTGACTGGATCTTCCCCGTTTGCTGGAATTGCTGTTGGAAG
rJMSF018O09+ CGGCATTACCATACGCAGGGTGACTGGATCTTCCCCGTTTGCTGGAATTGCTGTTGGAAG
rJMFF019G11+ GCTGGAATTGCTGTTGGAAG
____________________________________________________________
consensus CGGCATTACCATACGCAGGGTGACTGGATCTTCCCCGTTTGCTGGAATTGCTGTTGGAAG
. : . : . : . : . : . :
rJMSF020B22+ TGAAACCTCCGGGGGTGTAACCGATGTTCTGGCTGAGCATATAACCCTTTCCAACATGGG
rJMSF053K03+ TGAAACCTCCGGGGGTGTAACCGATGTTCTGGCTGAGCATATAACCCTTTCCAACATGGG
rJMSF018O09+ TGAAACCTCCGGGGGTGTAACCGATGTTCTGGCTGAGCATATAACCCTTTCCAACATGGG
rJMFF019G11+ TGAAACCTCCGGGGGTGTAACCGATGTTCTGGCTGAGCATATAACCCTTTCCAACATGGG
____________________________________________________________
consensus TGAAACCTCCGGGGGTGTAACCGATGTTCTGGCTGAGCATATAACCCTTTCCAACATGGG
. : . : . : . : . : . :
rJMSF020B22+ CGTTGGCATCCACATAAAAACTAACGTGGGGCGTGGAGGGATCATAAGAAACATTACCTT
rJMSF053K03+ CGTTGGCATCCACATAAAAACTAACGTGGGGCGTGGAGGGATCATAAGAAACATTACCTT
rJMSF018O09+ CGTTGGCATCCACATAAAAACTAACGTGGGGCGTGGAGGGATCATAAGAAACATTACCTT
rJMFF019G11+ CGTTGGCATCCACATAAAAACTAACGTGGGGCGTGGAGGGATCATAAGAAACATTACCTT
____________________________________________________________
consensus CGTTGGCATCCACATAAAAACTAACGTGGGGCGTGGAGGGATCATAAGAAACATTACCTT
. : . : . : . : . : . :
rJMSF020B22+ CTCCAATGTGTACATGGAAAAGACACGAACGGGGATAAGGATTGCGGGTGATGTTGGCGG
rJMSF053K03+ CTCCAATGTGTACATGGAAAAGACACGAACGGGGATAAGGATTGCGGGTGATGTTGGCGG
rJMSF018O09+ CTCCAATGTGTACATGGAAAAGACACGAACGGGGATAAGGATTGCGGGTGATGTTGGCGG
rJMFF019G11+ CTCCAATGTGTACATGGAAAAGACACGAACGGGGATAAGGATTGCGGGTGATGTTGGCGG
____________________________________________________________
consensus CTCCAATGTGTACATGGAAAAGACACGAACGGGGATAAGGATTGCGGGTGATGTTGGCGG
. : . : . : . : . : . :
rJMSF020B22+ GCATCCCGACGAGCAATTCAACCCGAACGCTATTCCCATCGTCCAAGACATCAAAATCAA
rJMSF053K03+ GCATCCCGACGAGCAATTCAACCCGAACGCTATTCCCATCGTCCAAGACATCAAAATCAA
rJMSF018O09+ GCATCCCGACGAGCAATTCAACCCGAACGCTATTCCCATCGTCCAAGACATCAAAATCAA
rJMFF019G11+ GCATCCCGACGAGCAATTCAACCCGAACGCTATTCCCATCGTCCAAGACATCAAAATCAA
____________________________________________________________
consensus GCATCCCGACGAGCAATTCAACCCGAACGCTATTCCCATCGTCCAAGACATCAAAATCAA
. : . : . : . : . : . :
rJMSF020B22+ GGATGTATGGGGCGAACAGGTTCTGCAGCCCGGTTGGATACGGGGTATACCAAAATCCCC
rJMSF053K03+ GGATGTATGGGGCGAACAGGTTCTGCAGCCCGGTTGGATACGGGGTATACCAAAATCCCC
rJMSF018O09+ GGATGTATGGGGCGAACAGGTTCTGCAGCCCGGTTGGATACGGGGTATACCAAAATCCCC
rJMFF019G11+ GGATGTATGGGGCGAACAGGTTCTGCAGCCCGGTTGGATACGGGGTATACCAAAATCCCC
____________________________________________________________
consensus GGATGTATGGGGCGAACAGGTTCTGCAGCCCGGTTGGATACGGGGTATACCAAAATCCCC
. : . : . : . : . : . :
rJMSF020B22+ TTTCACTAACATCTGCCTTTCCAACATCCACCTTAATGGTGCTAAATCACTCCGAAATCC
rJMSF053K03+ TTTCACTAACATCTGCCTTTCCAACATCCACCTTAATGGTGCTAAATCACTCCGAAATCC
rJMSF018O09+ TTTCACTAACATCTGCCTTTCCAACATCCACCTTAATGGTGCTAAATCACTCCGAAATCC
rJMFF019G11+ TTTCACTAACATCTGCCTTTCCAACATCCACCTTAATGGTGCTAAATCACTCNGAAATCC
____________________________________________________________
consensus TTTCACTAACATCTGCCTTTCCAACATCCACCTTAATGGTGCTAAATCACTCCGAAATCC
. : . : . : . : . : . :
rJMSF020B22+ TCCATGGAAGTGCTCGGATGCTAGCGGGGCTGCAGTTCAGGTTAGCCCCTCGCCCTGCTC
rJMSF053K03+ TCCATGGAAGTGCTCGGATGCTAGCGGGGCTGCAGTTCAGGTTAGCCCCTCGCCCTGCTC
rJMSF018O09+ TCCATGGAAGTGCTCGGATGCTAGCGGGGCTGCAGTTCAGGTTAGCCCCTCGCCCTGCTC
rJMFF019G11+ TCCATGGAAGTGCTCGGATGCTAGCGGGGCTGCAGTTCAGGTTAGCCCCTCGCCCTGCTC
____________________________________________________________
consensus TCCATGGAAGTGCTCGGATGCTAGCGGGGCTGCAGTTCAGGTTAGCCCCTCGCCCTGCTC
. : . : . : . : . : . :
rJMSF020B22+ TGAACTAACCCGAGATCAATCTGGTGCGTGCTCTTCGCCACCATTCTAAGTTAGCCATCA
rJMSF053K03+ TGAACTAACCCGAGATCAATCTGGTGCGTGCTCTTCGCCACCATTCTAAGTTAGCCATCA
rJMSF018O09+ TGAACTAACCCGAGATCAATCTGGTGCGTGCTCTTCGCCACCATTCTAAGTTAGCCATCA
rJMFF019G11+ TGAACTAACCCGAGATCAATCTGGTGCGTGCTCTTCGCCACCATTCTAAGTTAGCCATCA
____________________________________________________________
consensus TGAACTAACCCGAGATCAATCTGGTGCGTGCTCTTCGCCACCATTCTAAGTTAGCCATCA
. : . : . : . : . : . :
rJMSF020B22+ TGTATTCTTTCCATTTTTTTTCGTTAATCCACCGTTCATAATAAACTCTTTTGTGACACC
rJMSF053K03+ TGTATTCTTTCCATTTTTTTTCGTTAATCCACCGTTCATAATAAACTCTTTTGTGACACC
rJMSF018O09+ TGTATTCTTTCCATTTTTTTTCGTTAATCCACCGTTCATAATAAACTCTTTTGTGACACC
rJMFF019G11+ TGTATTCTTTCCATTTTTTTTCGTTAATCCACCGTTCATAATAAACTCTTTTGTGACACC
____________________________________________________________
consensus TGTATTCTTTCCATTTTTTTTCGTTAATCCACCGTTCATAATAAACTCTTTTGTGACACC
. : . : . : . : . : . :
rJMSF020B22+ CTTTCCTTTGTTAACAAAGGCATCAGGGGAAATGTAATTGTAACATGAGTTTTTTTAGAG
rJMSF053K03+ CTTTCCTTTGTTAACAAAGGCATCAGGGGAAATGTAATTGTAACATGAGTTTTTTTAGAG
rJMSF018O09+ CTTTCCTTTGTTAACAAAGGCATCAGGGGAAATGTAATTGTAACATGAGTTTTTTTAGAG
rJMFF019G11+ CTTTCCTTTGTTAACAAAGGCATCAGGGGAAATGTAATTGTAACATGAG-TTTTTTAGAG
____________________________________________________________
consensus CTTTCCTTTGTTAACAAAGGCATCAGGGGAAATGTAATTGTAACATGAGTTTTTTTAGAG
. : . : . : . : . : . :
rJMSF020B22+ TACATTCTTGGTCTATATAAGTGTA
rJMSF053K03+ TACATTCTTGGTCTATATAAGTGTA
rJMSF018O09+ TACATTCTTGGTCTATATAAGTGTACTTGTTCTAGGTTTGGATATGAATTATTTGCAA
rJMFF019G11+ TACATTCTTGGTCTATATAAGTGTACTTGTTCTAGGTTTGGATATGAATTATTTGCAACA
____________________________________________________________
consensus TACATTCTTGGTCTATATAAGTGTACTTGTTCTAGGTTTGGATATGAATTATTTGCAACA