Contig 013375:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF024L03Sequence671013375 (2)ref|NP_001233788.1|9e-109DNA repair protein RAD51 homolog [Solanum lycopersicum] sp|Q40134.1|RAD51_SOLLC 726013375 (2)ref|XP_009611626.1|6e-146PREDICTED: DNA repair protein RAD51 homolog [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF024L03- CAGCTGTTTGTACACA
                      ____________________________________________________________
consensus CAGCTGTTTGTACACA
 
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rJMSF024L03- AGACATAAATCTGCAGAAATTACAAATTTGTAATCCAGAAAAAGAAGAAAGTTGCAGACA
                      ____________________________________________________________
consensus AGACATAAATCTGCAGAAATTACAAATTTGTAATCCAGAAAAAGAAGAAAGTTGCAGACA
 
. : . : . : . : . : . :
rJMSF024L03- AAAGTTTGGTTGGTGCCAAACTGCCAATCAGTCCTTCACATCAGTTACACCTTCAGGAGA
                      ____________________________________________________________
consensus AAAGTTTGGTTGGTGCCAAACTGCCAATCAGTCCTTCACATCAGTTACACCTTCAGGAGA
 
. : . : . : . : . : . :
rJMSF024L03- AATTTGAAACCTTGCTTCAGCTTCAGCTAAACATGGAGAGCTTACTACTTTACAAACGCG
                      ____________________________________________________________
consensus AATTTGAAACCTTGCTTCAGCTTCAGCTAAACATGGAGAGCTTACTACTTTACAAACGCG
 
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rJMSF024L03- CTCTTCTCCTCTTCCCTTTCGAAGAGCCAGCCTTGTTGTAGAAGCGTGCGCCATAATGTT
                      ____________________________________________________________
consensus CTCTTCTCCTCTTCCCTTTCGAAGAGCCAGCCTTGTTGTAGAAGCGTGCGCCATAATGTT
 
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rJMSF024L03- GCCGCCTATGGGTTTGATCTGAGGTCCAGCAAAAATGGCAGAACCGTCGACTTGGGCAAC
                      ____________________________________________________________
consensus GCCGCCTATGGGTTTGATCTGAGGTCCAGCAAAAATGGCAGAACCGTCGACTTGGGCAAC
 
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rJMSF024L03- CACTTGGTTAGTAATTACAACTGCAACACCAAACTCGTCCGCTAACTTCTGAAGGCTTCT
                      ____________________________________________________________
consensus CACTTGGTTAGTAATTACAACTGCAACACCAAACTCGTCCGCTAACTTCTGAAGGCTTCT
 
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rJMSF024L03- TAGGAACTTTGCCAGATGCATTTGCCTGGCAGACAACTCCCCTCGTCCAGAAAAATCAGT
                      ____________________________________________________________
consensus TAGGAACTTTGCCAGATGCATTTGCCTGGCAGACAACTCCCCTCGTCCAGAAAAATCAGT
 
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rJMSF024L03- CCTATAAAGTGCGGTAGCACTATCCACAATCATAAGAGCAAACCTGGTTTCTACCATCAT
                      ____________________________________________________________
consensus CCTATAAAGTGCGGTAGCACTATCCACAATCATAAGAGCAAACCTGGTTTCTACCATCAT
 
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rJMSF024L03- TGAGGCTGCCTCGAGCAAAAGCCTTGACTGATGATCAGTGTTATAAGCTCGAGCATATGC
                      ____________________________________________________________
consensus TGAGGCTGCCTCGAGCAAAAGCCTTGACTGATGATCAGTGTTATAAGCTCGAGCATATGC
 
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rJMSF024L03- CACATTTTCTAGAACATCTGCTCCATTCAACCCAAACCTGTCTGCAATCTGCAAGAGTCT
JMSF024L03+ TGCAAGAGTCT
                      ____________________________________________________________
consensus CACATTTTCTAGAACATCTGCTCCATTCAACCCAAACCTGTCTGCAATCTGCAAGAGTCT
 
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rJMSF024L03- TTGTGGTCTGAAAGTGCCCTCAGCATCAATATACATTGCCTTCCCTTCACCGCCCCCTTG
JMSF024L03+ TTGTGGTCTGAAAGTGCCNTCAGCATCAATATACATTGCCTTCCCTTCACCGCCCCCTTG
                      ____________________________________________________________
consensus TTGTGGTCTGAAAGTGCCCTCAGCATCAATATACATTGCCTTCCCTTCACCGCCCCCTTG
 
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rJMSF024L03- ATCTAAGGGAAGTTGGCAAGTAACACATAATGTATGACAAAGCTGAGTCT
JMSF024L03+ ATCTAAGGGAAGTTGGCAAGTAACACATAATGTATGACAAAGCTGAGTCTTCCCAGAGCG
                      ____________________________________________________________
consensus ATCTAAGGGAAGTTGGCAAGTAACACATAATGTATGACAAAGCTGAGTCTTCCCAGAGCG
 
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JMSF024L03+ GAATTCGCCATAAATTTCAGTGATAGATCCCGTTTCAATTCCCCCTTCCAAGACTTTGTC
                      ____________________________________________________________
consensus GAATTCGCCATAAATTTCAGTGATAGATCCCGTTTCAATTCCCCCTTCCAAGACTTTGTC
 
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JMSF024L03+ AAGCTCTTTTGATCCAGATGTTATTTGAATGATTTCAAGCCTCTGTGCATGGAGTTGGCT
                      ____________________________________________________________
consensus AAGCTCTTTTGATCCAGATGTTATTTGAATGATTTCAAGCCTCTGTGCATGGAGTTGGCT
 
. : . : . : . : . : . :
JMSF024L03+ GGCACTAGTAAAACCCAGAGGCACCAATTTTGAAGCTGCCTCTATGATTTTGTCAACTTT
                      ____________________________________________________________
consensus GGCACTAGTAAAACCCAGAGGCACCAATTTTGAAGCTGCCTCTATGATTTTGTCAACTTT
 
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JMSF024L03+ AGCTTCACTGATCCCTTTTATTTGCAGAAGGTCTTTTCTAGGAGAGTACACAACTGATTC
                      ____________________________________________________________
consensus AGCTTCACTGATCCCTTTTATTTGCAGAAGGTCTTTTCTAGGAGAGTACACAACTGATTC
 
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JMSF024L03+ TACAGTACATAGACCCGCATCCTTAAGTTTCTTTACGTCAATGGCAGAGATTCCAGATTC
                      ____________________________________________________________
consensus TACAGTACATAGACCCGCATCCTTAAGTTTCTTTACGTCAATGGCAGAGATTCCAGATTC
 
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JMSF024L03+ CTGGAGTTGCTCAATCGGGAAAGGGCCGTGTTGAATTTCCTCGACCTCATCTTGCTGCCG
                      ____________________________________________________________
consensus CTGGAGTTGCTCAATCGGGAAAGGGCCGTGTTGAATTTCCTCGACCTCATCTTGCTGCCG
 
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JMSF024L03+ TTCTTGCACACTTTTCTGCTGGTTTCTGTGCTGCTGCTCCATTGTTGCTCCAAACTAGTG
                      ____________________________________________________________
consensus TTCTTGCACACTTTTCTGCTGGTTTCTGTGCTGCTGCTCCATTGTTGCTCCAAACTAGTG
 
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JMSF024L03+ TGGATGTATTTCGCTTTCGCACGGAGAAAGACGAAAGGGAAAAGATTTTAAAAGCGTTTT
                      ____________________________________________________________
consensus TGGATGTATTTCGCTTTCGCACGGAGAAAGACGAAAGGGAAAAGATTTTAAAAGCGTTTT
 
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JMSF024L03+ AGGCGCCAAAAATTAGAGCGTCGTGGGAGGGATCAAAATGAACCTCTAGCGTAATGGGCC
                      ____________________________________________________________
consensus AGGCGCCAAAAATTAGAGCGTCGTGGGAGGGATCAAAATGAACCTCTAGCGTAATGGGCC