Contig 013357:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF001O13Sequence199013357 (6)712002898 (7)gb|KJB53846.1|9e-104hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF022K08Sequence675013357 (6)ref|XP_004242663.1|5e-67PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers747002898 (7)gb|KJB53846.1|1e-105hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF023J15Sequence654013357 (6)ref|XP_004242663.1|1e-73PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers754002898 (7)gb|KJB53846.1|9e-110hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF023K08Sequence661013357 (6)ref|XP_004242663.1|5e-64PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers738002898 (7)gb|KJB53846.1|2e-109hypothetical protein B456_009G007500 [Gossypium raimondii]
JMSF029M23Sequence651013357 (6)ref|XP_004242663.1|6e-73PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers605002898 (7)ref|XP_004973082.1|1e-75PREDICTED: preprotein translocase subunit SECY, chloroplastic-like [Setaria ita
JMSF039K10Sequence696013357 (6)ref|XP_004242663.1|4e-70PREDICTED: preprotein translocase subunit SCY1, chloroplastic [Solanum lycopers912002898 (7)gb|KJB53846.1|3e-148hypothetical protein B456_009G007500 [Gossypium raimondii]

Alignment

This contig is upended


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JMSF023J15+                             AACTTGGGATAGATTTGACCAAGAAGCTGAAACACAATCTGT
JMSF029M23+                                           TTGACCAAGAAGCTGAAACACAATCTGT
JMSF039K10+                                           TTGACCAAGAAGCTGAAACACAATCTGT
JMSF023K08+                                                                      T
JMSF022K08+                                                        TGAAACACAATCTGT
                      ____________________________________________________________
consensus                               AACTTGGGATAGATTTGACCAAGAAGCTGAAACACAATCTGT
 
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JMSF023J15+           GCATTGATGAAAGGAACAATACCAAGGGAGCATATTCCAAGTCTACCAATACCGCCTCCA
JMSF029M23+           GCATTGATGAAAGGAACAATACCAAGGGAGCATATTCCAAGTCTACCAATACCGCCTCCA
JMSF039K10+           GCATTGATGAAAGGAACAATACCAAGGGAGCATATTCCAAGTCTACCAATACCGCCTCCA
JMSF023K08+           GCATTGATGAAAGGAACAATACCAAGGGAGCATATTCCAAGTCTACCAATACCGCCTCCA
JMSF022K08+           GCATTGATGAAAGGAACAATACCAAGGGAGCATATTCCAAGTCTACCAATACCGCCTCCA
                      ____________________________________________________________
consensus             GCATTGATGAAAGGAACAATACCAAGGGAGCATATTCCAAGTCTACCAATACCGCCTCCA
 
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JMSF023J15+           GAAAATGAATCCAAAGTGCTCAATATACTATTCTCATCTAAATTTCCAACAAATGCATCC
JMSF029M23+           GAAAATGAATCCAAAGTGCTCAATATACTATTCTCATCTAAATTTCCAACAAATGCATCC
JMSF039K10+           GAAAATGAATCCAAAGTGCTCAATATACTATTCTCATCTAAATTTCCAACAAATGCATCC
JMSF023K08+           GAAAATGAATCCAAAGTGCTCAATATACTATTCTCATCTAAATTTCCAACAAATGCATCC
JMSF022K08+           GAAAATGAATCCAAAGTGCTCAATATACTATTCTCATCTAAATTTCCAACAAATGCATCC
                      ____________________________________________________________
consensus             GAAAATGAATCCAAAGTGCTCAATATACTATTCTCATCTAAATTTCCAACAAATGCATCC
 
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JMSF023J15+           CTATTTACGCCACCCAGCGGTACATATATACCAACTCGTGACAAGGCCAAATAACCCAAG
JMSF029M23+           CTATTTACGCCACCCAGCGGTACATATATACCAACTCGTGACAAGGCCAAATAACCCAAG
JMSF039K10+           CTATTTACGCCACCCAGCGGTACATATATACCAACTCGTGACAAGGCCAAATAACCCAAG
JMSF023K08+           CTATTTACGCCACCCAGCGGTACATATATACCAACTCGTGACAAGGCCAAATAACCCAAG
JMSF022K08+           CTATTTACGCCACCCAGCGGTACATATATACCAACTCGTGACAAGGCCAAATAACCCAAG
                      ____________________________________________________________
consensus             CTATTTACGCCACCCAGCGGTACATATATACCAACTCGTGACAAGGCCAAATAACCCAAG
 
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JMSF023J15+           AGCTTGAGAAATTTTCCCGGTAATGGGCCTTTGAAGAAGTCCCCAAAATCAATACTAGTG
JMSF029M23+           AGCTTGAGAAATTTTCCCGGTAATGGGCCTTTGAAGAAGTCCCCAAAATCAATACTAGTG
JMSF039K10+           AGCTTGAGAAATTTTCCCGGTAATGGGCCTTTGAAGAAGTCCCCAAAATCAATACTAGTG
JMSF023K08+           AGCTTGAGAAATTTTCCCGGTAATGGGCCTTTGAAGAAGTCCCCAAAATCAATACTAGTG
JMSF022K08+           AGCTTGAGAAATTTTCCCGGTAATGGGCCTTTGAAGAAGTCCCCAAAATCAATACTAGTG
                      ____________________________________________________________
consensus             AGCTTGAGAAATTTTCCCGGTAATGGGCCTTTGAAGAAGTCCCCAAAATCAATACTAGTG
 
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JMSF023J15+           TCCTCAATTGCAGCTGCAACTCTTCTTGCTGATGAATTTTTCTCTTTTCTGGTACCTGAG
JMSF029M23+           TCCTCAATTGCAGCTGCAACTCTTCTTGCTGATGAATTTTTCTCTTTTCTGGTACCTGAG
JMSF039K10+           TCCTCAATTGCAGCTGCAACTCTTCTTGCTGATGAATTTTTCTCTTTTCTGGTACCTGAG
JMSF023K08+           TCCTCAATTGCAGCTGCAACTCTTCTTGCTGATGAATTTTTCTCTTTTCTGGTACCTGAG
JMSF022K08+           TCCTCAATTGCAGCTGCAACTCTTCTTGCTGATGAATTTTTCTCTTTTCTGGTACCTGAG
                      ____________________________________________________________
consensus             TCCTCAATTGCAGCTGCAACTCTTCTTGCTGATGAATTTTTCTCTTTTCTGGTACCTGAG
 
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JMSF023J15+           GTACTCTCAAATGCTTTCAACACAAACCCCACTGCACTTTCCCAGGCAGTGTTTAGATGT
JMSF029M23+           GTACTCTCAAATGCTTTCAACACAAACCCCACTGCACTTTCCCAGGCAGTGTTTAGATGT
JMSF039K10+           GTACTCTCAAATGCTTTCAACACAAACCCCACTGCACTTTCCCAGGCAGTGTTTAGATGT
JMSF023K08+           GTACTCTCAAATGCTTTCAACACAAACCCCACTGCACTTTCCCAGGCAGTGTTTAGATGT
JMSF022K08+           GTACTCTCAAATGCTTTCAACACAAACCCCACTGCACTTTCCCAGGCAGTGTTTAGATGT
                      ____________________________________________________________
consensus             GTACTCTCAAATGCTTTCAACACAAACCCCACTGCACTTTCCCAGGCAGTGTTTAGATGT
 
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JMSF023J15+           GATGATCTGCTTGAATTGATTCCCAATGGGTCAAATACTGAATTATCAGAGCTGGTTATG
JMSF029M23+           GATGATCTGCTTGAATTGATTCCCAATGGGTCAAATACTGAATTATCAGAGCTGGTTATG
JMSF039K10+           GATGATCTGCTTGAATTGATTCCCAATGGGTCAAATACTGAATTATCAGAGCTGGTTATG
JMSF023K08+           GATGATCTGCTTGAATTGATTCCCAATGGGTCAAATACTGAATTATCAGAGCTGGTTATG
JMSF022K08+           GATGATCTGCTTGAATTGATTCCCAATGGGTCAAATACTGAATTATCAGAGCTGGTTATG
                      ____________________________________________________________
consensus             GATGATCTGCTTGAATTGATTCCCAATGGGTCAAATACTGAATTATCAGAGCTGGTTATG
 
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JMSF023J15+           GGATTCCATGATTGGTGAGTGAGAGAAGGGTTTCCGTGGAGACGGACGCTGCTGGCTCTG
JMSF029M23+           GGATTCCATGATTGGTGAGTGAGAGAAGGGTTTCCGTGGAGACGGACGCTGCTGGCTCTG
JMSF039K10+           GGATTCCATGATTGGTGAGTGAGAGAAGGGTTTCCGTGGAGACGGACGCTGCTGGCTCTG
JMSF023K08+           GGATTCCATGATTGGTGAGTGAGAGAAGGGTTTCCGTGGAGACGGACGCTGCTGGCTCTG
JMSF001O13+                                                  AGACGGACGCTGCTGGCTCTG
JMSF022K08+           GGATTCCATGATTGGTGAGTGAGAGAAGGGTTTCCGTGGAGACGGACGCTGCTGGCTCTG
                      ____________________________________________________________
consensus             GGATTCCATGATTGGTGAGTGAGAGAAGGGTTTCCGTGGAGACGGACGCTGCTGGCTCTG
 
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JMSF023J15+           CAAATGAGGGTGTTTCGGTTGGTCCTTGGAGTGTTGAAGGCGGCGAAGCAGTGAGACAGA
JMSF029M23+           CAAATGAGGGTGTTTCGGTTGGTCCTTGGAGTGTTGAAGGCGGCGAAGCAGTGAGACAGA
JMSF039K10+           CAAATGAGGGTGTTTCGGTTGGTCCTTGGAGTGTTGAAGGCGGCGAAGCAGTGAGACAGA
JMSF023K08+           CAAATGAGGGTGTTTCGGTTGGTCCTTGGAGTGTTGAAGGCGGCGAAGCAGTGAGACAGA
JMSF001O13+           CAAATGAGGGTGTTTCGGTTGGTCCTTGGAGTGTTGAAGGCGGCGAAGCAGTGAGACAGA
JMSF022K08+           CAAATGAGGGTGTTTCGGTTGGTCCTTGGAGTGTTGAAGGCGGCGAAGCAGTGAGACAGA
                      ____________________________________________________________
consensus             CAAATGAGGGTGTTTCGGTTGGTCCTTGGAGTGTTGAAGGCGGCGAAGCAGTGAGACAGA
 
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JMSF023J15+           GAAGAAACTTCTCTCACCGTTATCAACATTGTTATCCTCCTAGCCCAGGAACACAAACAC
JMSF029M23+           GAAGAAACTTCTCTCACCGTTATCAACATTGTTATCCTCCTAGCCCAGGAACACAAACAC
JMSF039K10+           GAAGAAACTTCTCTCACCGTTATCAACATTGTTATCCTCCTAGCCCAGGAACACAAACAC
JMSF023K08+           GAAGAAACTTCTCTCACCGTTATCAACATTGTTATCCTCCTAGCCCAGGAACACAAACAC
JMSF001O13+           GAAGAAACTTCTCTCACCGTTATCAACATTGTTATCCTCCTAGCCCAGGAACACAAACAC
JMSF022K08+           GAAGAAACTTCTCTCACCGTTATCAACATTGTTATCCTCCTAGCCCAGGAACACAAACAC
                      ____________________________________________________________
consensus             GAAGAAACTTCTCTCACCGTTATCAACATTGTTATCCTCCTAGCCCAGGAACACAAACAC
 
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JMSF023J15+           CCACCAAACT                                                  
JMSF029M23+           CCACCAAACT                                                  
JMSF039K10+           CCACCAAACTAGGAAGACTGTGCGTGTGGAGGGGAGACCTTAGGATGTCGTGGCTTT   
JMSF023K08+           CCACCAAACTAGGAAGACTGTGCGTGTGGAGGGGAGACCTTAGGATGTCGTGGCTTT   
JMSF001O13+           CCACCAAACTAGGAAGACTGTGCGTGTGGAGGGGAGACCTTAGGATGTCGTGGCTTT   
JMSF022K08+           CCACCAAACTAGGAAGACTGTGCGTGTGGAGGGGAGACCTTAGGATGTCGTGGCTTTGTC
                      ____________________________________________________________
consensus             CCACCAAACTAGGAAGACTGTGCGTGTGGAGGGGAGACCTTAGGATGTCGTGGCTTTGTC