Contig 013126:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025O17Sequence617013126 (4)emb|CDO98618.1|1e-07unnamed protein product [Coffea canephora]790001406 (2)gb|AJC00855.1|2e-119cyclic nucleotide gated channel CNGC15 [Solanum lycopersicum]
JMFS030C08Sequence583013126 (4)ref|XP_010247505.1|7e-40PREDICTED: probable cyclic nucleotide-gated ion channel 20, chloroplastic, part
JMFS071F04Sequence624013126 (4)emb|CDO98618.1|4e-08unnamed protein product [Coffea canephora]
JMFS162E02Sequence534013126 (4)

Alignment

This contig is upended


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JMFS030C08+                                  TTTAATATGTCAATGGTTGGGCATGTTGTGCAGTATG
                      ____________________________________________________________
consensus                                    TTTAATATGTCAATGGTTGGGCATGTTGTGCAGTATG
 
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JMFS030C08+           GATCATTGCACACTCCCAATCGCCCTGATCTCAAGAGATGTTCATTTTTCTGTGCATAAT
                      ____________________________________________________________
consensus             GATCATTGCACACTCCCAATCGCCCTGATCTCAAGAGATGTTCATTTTTCTGTGCATAAT
 
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JMFS030C08+           CATAATCTTCCCAATCATTTGATTCCCTTATAGCAGTGGAAGGATATATTTCCAGTGTTT
                      ____________________________________________________________
consensus             CATAATCTTCCCAATCATTTGATTCCCTTATAGCAGTGGAAGGATATATTTCCAGTGTTT
 
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JMFS030C08+           GCCTAGTTGACTTGCGTCCTAATGCTACTTGAGATGTTCTAAGGTTGTTCGTGGGTGTTT
                      ____________________________________________________________
consensus             GCCTAGTTGACTTGCGTCCTAATGCTACTTGAGATGTTCTAAGGTTGTTCGTGGGTGTTT
 
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JMFS030C08+           GCCCAACATACAAGGGACCACTCATCTGTATGTAAGAAGTCCGCCTTTCATTTCTCAGAG
                      ____________________________________________________________
consensus             GCCCAACATACAAGGGACCACTCATCTGTATGTAAGAAGTCCGCCTTTCATTTCTCAGAG
 
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JMFS030C08+           GACCAGTAAATCCAAAATGATTATTATTTTCAGTATCATACGAGTTTGCAGGAATAGACA
JMFF025O17+                                                    GAGTTTGCAGGAATAGACA
JMFS162E02+                                                    GAGTTTGCAGGAATAGACA
JMFS071F04+                                                    GAGTTTGCAGGAATAGACA
                      ____________________________________________________________
consensus             GACCAGTAAATCCAAAATGATTATTATTTTCAGTATCATACGAGTTTGCAGGAATAGACA
 
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JMFS030C08+           GTGATCTCCTTGCCCTATAGGAAAATCTCCTATATCCAGATTCATCAGCCTGTGAATCTG
JMFF025O17+           GTGATCTCCTTGCCCTATAGGAAAATCTCCTATATCCAGATTCATCAGCCTGTGAATCTG
JMFS162E02+           GTGATCTCCTTGCCCTATAGGAAAATCTCCTATATCCAGATTCATCAGCCTGTGAATCTG
JMFS071F04+           GTGATCTCCTTGCCCTATAGGAAAATCTCCTATATCCAGATTCATCAGCCTGTGAATCTG
                      ____________________________________________________________
consensus             GTGATCTCCTTGCCCTATAGGAAAATCTCCTATATCCAGATTCATCAGCCTGTGAATCTG
 
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JMFS030C08+           TGGCTGATAACATTGGTACTACATCTCTTTCATAAGCAGCCATTTTCAGGCAGTTGATCG
JMFF025O17+           TGGCTGATAACATTGGTACTACATCTCTTTCATAAGCAGCCATTTTCAGGCAGTTGATCG
JMFS162E02+           TGGCTGATAACATTGGTACTACATCTCTTTCATAAGCAGCCATTTTCAGGCAGTTGATCG
JMFS071F04+           TGGCTGATAACATTGGTACTACATCTCTTTCATAAGCAGCCATTTTCAGGCAGTTGATCG
                      ____________________________________________________________
consensus             TGGCTGATAACATTGGTACTACATCTCTTTCATAAGCAGCCATTTTCAGGCAGTTGATCG
 
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JMFS030C08+           AGTTTACGTAAAATTGCGTCAAGAAAACGCTACTCTCTCTCTCCCCTCAGAATCTCTGCG
JMFF025O17+           AGTTTACGTAAAATTGCGTCAAGAAAACGCTACTCTCTCTCTCCCCTCAGAATCTCTGCG
JMFS162E02+           AGTTTACGTAAAATTGCGTCAAGAAAACGCTACTCTCTCTCTCCCCTCAGAATCTCTGCG
JMFS071F04+           AGTTTACGTAAAATTGCGTCAAGAAAACGCTACTCTCTCTCTCCCCTCAGAATCTCTGCG
                      ____________________________________________________________
consensus             AGTTTACGTAAAATTGCGTCAAGAAAACGCTACTCTCTCTCTCCCCTCAGAATCTCTGCG
 
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JMFS030C08+           ACTCTCAAGCTAAGCAAGGTTCTTGAATTGATGATTGCCAGAAGAAACTAAAAACT    
JMFF025O17+           ACTCTCAAGCTAAGCAAGGTTCTTGAATTGATGATTGCCAGAAGAAACTAAAAACTGCAT
JMFS162E02+           ACTCTCAAGCTAAGCAAGGTTCTTGAATTGATGATTGCCAGAAGAAACTAAAAACTGCAT
JMFS071F04+           ACTCTCAAGCTAAGCAAGGTTCTTGAATTGATGATTGCCAGAAGAAACTAAAAACTGCAT
                      ____________________________________________________________
consensus             ACTCTCAAGCTAAGCAAGGTTCTTGAATTGATGATTGCCAGAAGAAACTAAAAACTGCAT
 
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JMFF025O17+           GCTTTAATTTGAAGTAGAATTGAAGAATGAGTGGAATAGCAGTGGTGGAGAATCTGAATG
JMFS162E02+           GCTTTAATTTGAAGTAGAATTGAAGAATGAGTGGAATAGCAGTGGTGGAGAATCTGAATG
JMFS071F04+           GCTTTAATTTGAAGTAGAATTGAAGAATGAGTGGAATAGCAGTGGTGGAGAATCTGAATG
                      ____________________________________________________________
consensus             GCTTTAATTTGAAGTAGAATTGAAGAATGAGTGGAATAGCAGTGGTGGAGAATCTGAATG
 
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JMFF025O17+           GCTCCGATAGATCCCTCACCAGCCACTGATAGATAGATGAAGATCAGAAGGTGTAGTATA
JMFS162E02+           GCTCCGATAGATCCCTCACCAGCCACTGATAGATAGATGAAGATCAGAAGGTGTAGTATA
JMFS071F04+           GCTCCGATAGATCCCTCACCAGCCACTGATAGATAGATGAAGATCAGAAGGTGTAGTATA
                      ____________________________________________________________
consensus             GCTCCGATAGATCCCTCACCAGCCACTGATAGATAGATGAAGATCAGAAGGTGTAGTATA
 
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JMFF025O17+           GAGAGCGAGAGAGATTTAATCCCAAATTACAAAGAGCGGAGGGAATGAGGATATCGATGA
JMFS162E02+           GAGAGCGAGAGAGATTTAATCCCAAATTACAAAGAGCGGAGGGAATGAGGATATCGATGA
JMFS071F04+           GAGAGCGAGAGAGATTTAATCCCAAATTACAAAGAGCGGAGGGAATGAGGATATCGATGA
                      ____________________________________________________________
consensus             GAGAGCGAGAGAGATTTAATCCCAAATTACAAAGAGCGGAGGGAATGAGGATATCGATGA
 
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JMFF025O17+           GCATGAGCTAACTCCTTCAAACTTTAAAGAACTGGATCGAATGGCCAGCTGACTGCTGAC
JMFS162E02+           GCATGAGCTAACTCCTTCAAACTTTAAAGAACTGGATCGAATGGCCAGCTGACTGCTGAC
JMFS071F04+           GCATGAGCTAACTCCTTCAAACTTTAAAGAACTGGATCGAATGGCCAGCTGACTGCTGAC
                      ____________________________________________________________
consensus             GCATGAGCTAACTCCTTCAAACTTTAAAGAACTGGATCGAATGGCCAGCTGACTGCTGAC
 
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JMFS162E02+           TGAAGAATAGC                                                 
JMFS071F04+           TGAAGAATAGCAGTAAAAATTATACTCCGTAGAATATATATGCTCCTGCGTTACACACCA
                      ____________________________________________________________
consensus             TGAAGAATAGCAGTAAAAATTATACTCCGTAGAATATATATGCTCCTGCGTTACACACCA