Contig 012493:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF018A09Sequence377003142 (4)ref|XP_004230322.1|1e-24PREDICTED: importin subunit alpha-1 [Solanum lycopersicum]715012493 (5)gb|AAK38726.1|AF369706_12e-92importin alpha 1 [Capsicum annuum]
JMFF018E13Sequence113003142 (4)720012493 (5)gb|AAK38726.1|AF369706_15e-83importin alpha 1 [Capsicum annuum]
JMFF032H16Sequence113003142 (4)725012493 (5)gb|AAK38726.1|AF369706_12e-84importin alpha 1 [Capsicum annuum]
JMFF051K13Sequence626012493 (5)ref|XP_009796205.1|3e-40PREDICTED: importin subunit alpha-1 [Nicotiana sylvestris]541012493 (5)gb|AAK38726.1|AF369706_14e-12importin alpha 1 [Capsicum annuum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF018A09+ AGAAGAGCATCA
                      ____________________________________________________________
consensus AGAAGAGCATCA
 
. : . : . : . : . : . :
rJMFF018A09+ AGAAAGAAGCTNGTTGGACAATCTCTAATATCACTGCTGGAAATAAAGATCAAATAAAGG
                      ____________________________________________________________
consensus AGAAAGAAGCTNGTTGGACAATCTCTAATATCACTGCTGGAAATAAAGATCAAATAAAGG
 
. : . : . : . : . : . :
rJMFF018A09+ CCTGTTATTGAGTCAAAAATTATTCTTCCTTTGGTGTGCCTCCTTCAACAAGCAGAATTT
rJMFF032H16+ ATGCAGAATTT
rJMFF018E13+ TCAACATGCAGAATTN
                      ____________________________________________________________
consensus CCTGTTATTGAGTCAAAAATTATTCTTCCTTTGGTGTGCCTCCTTCAACATGCAGAATTT
 
. : . : . : . : . : . :
rJMFF018A09+ GACATCAAGAAAGAGGCTGCTTGGGCCATATCAAATGCCACATCTGGAGGATCCAATGAA
rJMFF032H16+ GACATCAAGAAAGAGGCTGCTTGGGCCATATCAAATGCCACATCTGGAGGATCCAATGAA
rJMFF018E13+ GACATCAAGAAAGAGGCTGCTTGGGCCATATCAAATGCCACATNTGGAGGATCCAATGAA
                      ____________________________________________________________
consensus GACATCAAGAAAGAGGCTGCTTGGGCCATATCAAATGCCACATCTGGAGGATCCAATGAA
 
. : . : . : . : . : . :
rJMFF018A09+ CAGATTAGGTTCTTGGCCAGTCAAGGTTGCGTTAAGCCACTTTGTGATCTCCTGATATGC
rJMFF032H16+ CAGATTAGGTTCTTGGCCAGTCAAGGTTGCGTTAAGCCACTTTGTGATCTCCTGATATGC
rJMFF018E13+ CAGATTAGGTTCTTGGCCAGTCAAGGTTGCGTTAAGCCACTTTGTGATCTCCTGATATGC
                      ____________________________________________________________
consensus CAGATTAGGTTCTTGGCCAGTCAAGGTTGCGTTAAGCCACTTTGTGATCTCCTGATATGC
 
. : . : . : . : . : . :
rJMFF018A09+ CCTGATCCAAGAATTGTTACGGTATGCCTTGAGGGGCTTGAGAACATTCTAAAGGTAGGT
rJMFF032H16+ CCTGATCCAAGAATTGTTACGGTATGCCTTGAGGGGCTTGAGAACATTCTAAAGGTAGGT
rJMFF018E13+ CCTGATCCAAGAATTGTTACGGTATGCCTTGAGGGGCTTGAGAACATTCTAAAGGTAGGT
JMFF051K13- AGAACATTCTAAAGGTAGGT
                      ____________________________________________________________
consensus CCTGATCCAAGAATTGTTACGGTATGCCTTGAGGGGCTTGAGAACATTCTAAAGGTAGGT
 
. : . : . : . : . : . :
rJMFF018A09+ GAGGCGGACAAAAAATTGGGAATGAATGATGGCATCAATATTTATGCACAAATGATTGAT
rJMFF032H16+ GAGGCGGACAAAAAATTGGGAATGAATGATGGCATCAATATTTATGCACAAATGATTGAT
rJMFF018E13+ GAGGCGGACAAAAAATTGGGAATGAATGATGGCATCAATATTTATGCACAAATGATTGAT
JMFF051K13- GAGGCGGACAAAAAATTGGGAATGAATGATGGCATCAATATTTATGCACAAATGATTGAT
                      ____________________________________________________________
consensus GAGGCGGACAAAAAATTGGGAATGAATGATGGCATCAATATTTATGCACAAATGATTGAT
 
. : . : . : . : . : . :
rJMFF018A09+ GAATGCGAAGGTTTGGACAAGCTTGAGAATCTCCAAACTCATGACAACAATGAGATTTAT
rJMFF032H16+ GAATGCGAAGGTTTGGACAAGCTTGAGAATCTCCAAACTCATGACAACAATGAGATTTAT
rJMFF018E13+ GAATGCGAAGGTTTGGACAAGCTTGAGAATCTCCAAACTCATGACAACAATGAGATTTAT
JMFF051K13- GAATGCGAAGGTTTGGACAAGCTTGAGAATCTCCAAACTCATGACAACAATGAGATTTAT
rJMFF051K13+ T
                      ____________________________________________________________
consensus GAATGCGAAGGTTTGGACAAGCTTGAGAATCTCCAAACTCATGACAACAATGAGATTTAT
 
. : . : . : . : . : . :
rJMFF018A09+ GAAAAGGCTGTGAAAATCTTGGAGAAATACTGGGGTGACGAAGACGAAGAGCCAAATCTT
rJMFF032H16+ GAAAAGGCTGTGAAAATCTTGGAGAAATACTGGGGTGACGAAGACGAAGAGCCAAATCTT
rJMFF018E13+ GAAAAGGCTGTGAAAATCTTGGAGAAATACTGGGGTGACGAAGACGAAGAGCCAAATCTT
JMFF051K13- GAAAAGGCTGTGAAAATCTTGGAGAAATACTGGGGTGACGAAGACGAAGAGCCAAATCTT
rJMFF051K13+ GAAAAGGCTGTGAAAATCTTGGAGAAATACTGGGGTGACGAAGACGAAGAGCCAAATCTT
                      ____________________________________________________________
consensus GAAAAGGCTGTGAAAATCTTGGAGAAATACTGGGGTGACGAAGACGAAGAGCCAAATCTT
 
. : . : . : . : . : . :
rJMFF018A09+ CCTGATGGCGTTGATGAAAATCAGCAGGGTTTTACCTTTGGGAACAGCCAGCCTAATGTC
rJMFF032H16+ CCTGATGGCGTTGATGAAAATCAGCAGGGTTTTACCTTTGGGAACAGCCAGCCTAATGTC
rJMFF018E13+ CCTGATGGCGTTGATGAAAATCAGCAGGGTTTTACCTTTGGGAACAGCCAGCCTAATGTC
JMFF051K13- CCTGATGGCGTTGATGAAAATCAGCAGGGTTTTACCTTTGGGAACAGCCAGCCTAATGTC
rJMFF051K13+ CCTGATGGCGTTGATGAAAATCAGCAGGGTTTTACCTTTGGGAACAGCCAGCCTAATGTC
                      ____________________________________________________________
consensus CCTGATGGCGTTGATGAAAATCAGCAGGGTTTTACCTTTGGGAACAGCCAGCCTAATGTC
 
. : . : . : . : . : . :
rJMFF018A09+ CCTGAGGGTGGCTTCAAATTTGGGTAGTAAGGGGAGAGATGCAGCAGCAGCAGCAGGAGG
rJMFF032H16+ CCTGAGGGTGGCTTCAAATTTGGGTAGTAAGGGGAGAGATGCAGCAGCAGCAGCAGGAGG
rJMFF018E13+ CCTGAGGGTGGCTTCAAATTTGGGTAGTAAGGGGAGAGATGCAGCAGCAGCAGCAGGAGG
JMFF051K13- CCTGAGGGTGGCTTCAAATTTGGGTAGTAAGGGGAGAGATGCAGCAGCAGCAGCAGGAGG
rJMFF051K13+ CCTGAGGGTGGCTTCAAATTTGGGTAGTAAGGGGAGAGATGCAGCAGCAGCAGCAGGAGG
                      ____________________________________________________________
consensus CCTGAGGGTGGCTTCAAATTTGGGTAGTAAGGGGAGAGATGCAGCAGCAGCAGCAGGAGG
 
. : . : . : . : . : . :
rJMFF018A09+ AGGTTTGGCTTTCTTTCTACTTGGTTAGCGAATTTGTAGTTGGCAAAAGTTTCTGGTTGG
rJMFF032H16+ AGGTTTGGCTTTCTTTCTACTTGGTTAGCAAATTTGTAGTTGGCAAAAGTTTCTGGTTGG
rJMFF018E13+ AGGTTTGGCTTTCTTTCTACTTGGTTAGCAAATTTGTAGTTGGCAAAAGTTTCTGGTTGG
JMFF051K13- AGGTTTGGCTTTCTTTCTACTTGGTTAGCAAATTTGTAGTTGGCAAAAGTTTCTGGTTGG
rJMFF051K13+ AGGTTTGGCTTTCTTTCTACTTGGTTAGCAAATTTGTAGTTGGCAAAAGTTTCTGGTTGG
                      ____________________________________________________________
consensus AGGTTTGGCTTTCTTTCTACTTGGTTAGCAAATTTGTAGTTGGCAAAAGTTTCTGGTTGG
 
. : . : . : . : . : . :
rJMFF018A09+ TTGCCCAAAGGTTGTTTTATTGCTGGAATTTTTACAATTTAAT
rJMFF032H16+ TTGCCCAAAGGTTGTTTTATTGCTGGAATTTTTACAATTTAATGCTTTTGTTTAATTTGT
rJMFF018E13+ TTGCCCAAAGGTTGTTTTATTGCTGGAATTTTTACAATTTAATGCTTTTGTTTAATTTGT
JMFF051K13- TTGCCCAAAGGTTGTTTTATTGCTGGAATTTTTACAATTTAATGCTTTTGTTTAATTTGT
rJMFF051K13+ TTGCCCAAAGGTTGTTTTATTGCTGGAATTTTTACAATTTAATGCTTTTGTTTAATTTGT
                      ____________________________________________________________
consensus TTGCCCAAAGGTTGTTTTATTGCTGGAATTTTTACAATTTAATGCTTTTGTTTAATTTGT
 
. : . : . : . : . : . :
rJMFF032H16+ TTTCTTCTCCTTTTTTATTTGTTTGTTTTTTTTGTTGATTTTCTTTTGGGTACTTGGCAT
rJMFF018E13+ TTTCTTCTCCTTTTTTATTTGTTTGTTTTTTTTGTTGATTTTCTTTTGGGTACTTGGCAT
JMFF051K13- TTTCTTCTCCTTTTTTATTTGTTTGTTTTTTTTGTTGATTTTCTTTTGGGTACTTGGCAT
rJMFF051K13+ TTTCTTCTCCTTTTTTATTTGTTTGTTTTTTTTGTTGATTTTCTTTTGGGTACTTGGCAT
                      ____________________________________________________________
consensus TTTCTTCTCCTTTTTTATTTGTTTGTTTTTTTTGTTGATTTTCTTTTGGGTACTTGGCAT
 
. : . : . : . : . : . :
rJMFF032H16+ CAAAGAATTATTTATGGGATTGGTTTTGGTTTTGTG
rJMFF018E13+ CAAAGAATTATTTATGGGATTGGTTTTGGTTTTGTG
JMFF051K13- CANAGAATTATTTATGGGATTGGTTTTGGTTTTGTGTGAAAAGTGAAATGATATGCTTTT
rJMFF051K13+ CAAAGAATTATTTATGGGATTGGTTTTGGTTTTGTGTGAAAAGTGAAATGATATGCTTTT
                      ____________________________________________________________
consensus CAAAGAATTATTTATGGGATTGGTTTTGGTTTTGTGTGAAAAGTGAAATGATATGCTTTT
 
. : . : . : . : . : . :
JMFF051K13- AGTTCTGAGTCATAACAAGTGGCTATGGATCAAAGGAGATACACCGCGTTTCTA
rJMFF051K13+ AGTTCTGAGTCATAACAAGTGGCTATGGATCAAAGGAGATACCCCGCGTTTCTATCAATA
                      ____________________________________________________________
consensus AGTTCTGAGTCATAACAAGTGGCTATGGATCAAAGGAGATACCCCGCGTTTCTATCAATA
 
. : . : . : . : . : . :
rJMFF051K13+ TAACTATTCTTTTCCCCTXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGGATCCG
                      ____________________________________________________________
consensus TAACTATTCTTTTCCCCTNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGGATCCG