Contig 012414:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF003E09Sequence561011961 (5)emb|CDO97628.1|8e-51unnamed protein product [Coffea canephora]716012414 (4)
JMFF025I08Sequence541011961 (5)ref|XP_007041201.1|4e-47Smg-4/UPF3 family protein, putative isoform 2, partial [Theobroma cacao] gb|EOX718012414 (4)
JMFF042P13Sequence578011961 (5)ref|XP_009775100.1|1e-69PREDICTED: regulator of nonsense transcripts UPF3-like isoform X2 [Nicotiana sy571012414 (4)
JMSF015J12Sequence489011961 (5)emb|CDO97628.1|9e-34unnamed protein product [Coffea canephora]760012414 (4)ref|XP_011088114.1|8e-17PREDICTED: regulator of nonsense transcripts UPF3-like [Sesamum indicum]

Alignment

This contig is upended


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rJMSF015J12+           CTCAAGATTCTGCTGAAGGAAGTCTTGTGGAAGTGAAAAATGGACTAAGTGCACGTGGT
                      ____________________________________________________________
consensus              CTCAAGATTCTGCTGAAGGAAGTCTTGTGGAAGTGAAAAATGGACTAAGTGCACGTGGT
 
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rJMSF015J12+          GGAGAGTTCAAACCCACTGGAAGTGGACGAAGTTCTCATTCTTCTGTTGATAATGGTACT
                      ____________________________________________________________
consensus             GGAGAGTTCAAACCCACTGGAAGTGGACGAAGTTCTCATTCTTCTGTTGATAATGGTACT
 
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rJMSF015J12+          TACAGATATAGTGGTCGTCGTGGAACAGCACATAATACAAAAGATGCTGATGGCACCTCA
                      ____________________________________________________________
consensus             TACAGATATAGTGGTCGTCGTGGAACAGCACATAATACAAAAGATGCTGATGGCACCTCA
 
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rJMSF015J12+          TTTGGGGAAGGGCGACCCTCAAGAAGAGGAGGTCCTGGATATGGTACCCATGAGAAACAA
rJMFF025I08+               GGAAGGGCGACCNTCAAGAAGAGGAGGTCCTGGATATGGTACCCATGAGAAACAA
rJMFF003E09+               GGAAGGGCGACCNTCAAGAAGAGGAGGTCCTGGATATGGTACCCATGAGAAACAA
                      ____________________________________________________________
consensus             TTTGGGGAAGGGCGACCCTCAAGAAGAGGAGGTCCTGGATATGGTACCCATGAGAAACAA
 
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rJMSF015J12+          GTATGGGTCCAAAAGTCAAGTTCTGGTTCTTAATTTTGTTGTTTGTGTGAAACGCCTGAT
rJMFF025I08+          GTATGGGTCCAAAAGTCAAGTTCTGGTTCTTAATTTTGTTGTTTGTGTGAAACGCCTGAT
rJMFF003E09+          GTATGGGTCCAAAAGTCAAGTTCTGGTTCTTAATTTTGTTGTTTGTGTGAAACGCCTGAT
                      ____________________________________________________________
consensus             GTATGGGTCCAAAAGTCAAGTTCTGGTTCTTAATTTTGTTGTTTGTGTGAAACGCCTGAT
 
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rJMSF015J12+          TGCGTACCATATCGAAGTATAAATCTGCTGGTGGCTATGCTCTGTCTTTCTCTCTTCCTC
rJMFF025I08+          TGCGTACCATATCGAAGTATAAATCTGCTGGTGGCTATGCTCTGTCTTTCTCTCTTCCTC
rJMFF003E09+          TGCGTACCATATCGAAGTATAAATCTGCTGGTGGCTATGCTCTGTCTTTCTCTCTTCCTC
                      ____________________________________________________________
consensus             TGCGTACCATATCGAAGTATAAATCTGCTGGTGGCTATGCTCTGTCTTTCTCTCTTCCTC
 
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rJMSF015J12+          TGCTTAGATCAGGAGCGGGCAAGTTTGCTGAAGACAAGAAATTGAAGACCTTCAGTGGGA
rJMFF025I08+          TGCTTAGATCAGGAGCGGGCAAGTTTGCTGAAGACAAGAAATTGAAGACCTTCAGTGGGA
rJMFF003E09+          TGCTTAGATCAGGAGCGGGCAAGTTTGCTGAAGACAAGAAATTGAAGACCTTCAGTGGGA
rJMFF042P13+                                       GAAGACAAGAAATTGAAGACCTTCAGTGGGA
                      ____________________________________________________________
consensus             TGCTTAGATCAGGAGCGGGCAAGTTTGCTGAAGACAAGAAATTGAAGACCTTCAGTGGGA
 
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rJMSF015J12+          TTTTGAATATACATGTTGCTACGGATGTGTTTATTGTTCAACGAGGGGTGAACCTTTGAT
rJMFF025I08+          TTTTGAATATACATGTTGCTACGGATGTGTTTATTGTTCAACGAGGGGTGAACCTTTGAT
rJMFF003E09+          TTTTGAATATACATGTTGCTACGGATGTGTTTATTGTTCAACGAGGGGTGAACCTTTGAT
rJMFF042P13+          TTTTGAATATACATGTTGCTACGGATGTGTTTATTGTTCAACGAGGGGTGAACCTTTGAT
                      ____________________________________________________________
consensus             TTTTGAATATACATGTTGCTACGGATGTGTTTATTGTTCAACGAGGGGTGAACCTTTGAT
 
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rJMSF015J12+          CATACTACACCAAAGATGGTCTGGGGGTAAGAACGAACACCATTTGGATGACGACAAAAT
rJMFF025I08+          CATACTACACCAAAGATGGTCTGGGGGTAAGAACGAACACCATTTGGATGACGACAAAAT
rJMFF003E09+          CATACTACACCAAAGATGGTCTGGGGGTAAGAACGAACACCATTTGGATGACGACAAAAT
rJMFF042P13+          CATACTACACCAAAGATGGTCTGGGGGTAAGAACGAACACCATTTGGATGACGACAAAAT
                      ____________________________________________________________
consensus             CATACTACACCAAAGATGGTCTGGGGGTAAGAACGAACACCATTTGGATGACGACAAAAT
 
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rJMSF015J12+          AACACCACAATTTTCAACCTGGTGCTACTCTGATTGATTGGGTGGCTTTCATCGGTGGAA
rJMFF025I08+          AACACCACAATTTTCAACCTGGTGCTACTCTGATTGATTGGGTGGCTTTCATCGGTGGAA
rJMFF003E09+          AACACCACAATTTTCAACCTGGTGCTACTCTGATTGATTGGGTGGCTTTCATCGGTGGAA
rJMFF042P13+          AACACCACAATTTTCAACCTGGTGCTACTCTGATTGATTGGGTGGCTTTCATCGGTGGAA
                      ____________________________________________________________
consensus             AACACCACAATTTTCAACCTGGTGCTACTCTGATTGATTGGGTGGCTTTCATCGGTGGAA
 
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rJMSF015J12+          CCGACACACCCAGTTCCTACCATTGACTCAGCTGGTTATTATCAAGCATACTATAGCGGT
rJMFF025I08+          CCGACACACCCAGTTCCTACCATTGACTCAGCTGGTTATTATCAAGCATACTATAGCGGT
rJMFF003E09+          CCGACACACCCAGTTCCTACCATTGACTCAGCTGGTTATTATCAAGCATACTATAGCGGT
rJMFF042P13+          CCGACACACCCAGTTCCTACCATTGACTCAGCTGGTTATTATCAAGCATACTATAGCGGT
                      ____________________________________________________________
consensus             CCGACACACCCAGTTCCTACCATTGACTCAGCTGGTTATTATCAAGCATACTATAGCGGT
 
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rJMSF015J12+          GGATGGTTTCTTTTTGTTGACTTTAATGTATATACAAAAACACGGAATTACGTGAGATAC
rJMFF025I08+          GGATGGTTTCTTTTTGTTGACTTTAATGTATATACAAAAACACGGAATTACGTGAGATAC
rJMFF003E09+          GGATGGTTTCTTTTTGTTGACTTTAATGTATATACAAAAACACGGAATTACGTGAGATAC
rJMFF042P13+          GGATGGTTTCTTTTTGTTGACTTTAATGTATATACAAAAACACGGAATTACGTGAGATAC
                      ____________________________________________________________
consensus             GGATGGTTTCTTTTTGTTGACTTTAATGTATATACAAAAACACGGAATTACGTGAGATAC
 
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rJMSF015J12+          CCCCAACCGCTTAGTTTTACATACGTATATACTATATATGT                   
rJMFF025I08+          CCCCAACCGCTTAGTTTTACATACGTATATACTATATATGTTATTAGCCTTGTGTTAATG
rJMFF003E09+          CCCCAACCGCTTAGTTTTACATACGTATATACTATATATGTTATTAGCCTTGTGTTAATG
rJMFF042P13+          CCCCAACCGCTTAGTTTTACATACGTATATACTATATATGTTATTAGCCTTGTGTTAATG
                      ____________________________________________________________
consensus             CCCCAACCGCTTAGTTTTACATACGTATATACTATATATGTTATTAGCCTTGTGTTAATG
 
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rJMFF025I08+          CTAGGCTTGGGTTGACCGATTGGGGATTGATTGTGAACAAAAAACAGGAAGCTTGGAGTT
rJMFF003E09+          CTAGGCTTGGGTTGACCGATTGGGGATTGATTGTGAACAAAAAACAGGAAGCTTGGAGTT
rJMFF042P13+          CTAGGCTTGGGTTGACCGATTGGGGATTGATTGTGAACAAAAAACAGGAAGCTTGGAGTT
                      ____________________________________________________________
consensus             CTAGGCTTGGGTTGACCGATTGGGGATTGATTGTGAACAAAAAACAGGAAGCTTGGAGTT
 
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rJMFF025I08+          GCTAGATAGACACTTTGGAAGTGCAACATTTTAGTTATGGTCAGATATTACCCTTTTGAT
rJMFF003E09+          GCTAGATAGACACTTTGGAAGTGCAACATTTTAGTTATGGTCAGATATTACCCTTTTGAT
rJMFF042P13+          GCTAGATAGACACTTTGGAAGTGCAACATTTTAGTTATGGTCAGATATTACCCTTTTGAT
                      ____________________________________________________________
consensus             GCTAGATAGACACTTTGGAAGTGCAACATTTTAGTTATGGTCAGATATTACCCTTTTGAT
 
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rJMFF025I08+          G                                                           
rJMFF003E09+          G                                                           
rJMFF042P13+          GATGAGTAGTGGAATGAAAAAAAGCTCGTTTGGTAAAAAAAAAAAAAAAATCTCCAGGGT
                      ____________________________________________________________
consensus             GATGAGTAGTGGAATGAAAAAAAGCTCGTTTGGTAAAAAAAAAAAAAAAATCTCCAGGGT