| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF004K03 | Sequence | 537 | 012816 (5) | ref|XP_006338515.1| | 5e-42 | PREDICTED: probable peptide/nitrate transporter At5g14940-like [Solanum tuberos | 706 | 012377 (3) | ref|XP_009758756.1| | 3e-96 | PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757. |
| JMFF017C24 | Sequence | 546 | 012816 (5) | ref|XP_009758756.1| | 3e-82 | PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757. | 748 | 012377 (3) | ref|XP_009758756.1| | 1e-94 | PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757. |
| JMFF036H07 | Sequence | 551 | 012816 (5) | ref|XP_009758756.1| | 5e-84 | PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757. | 699 | 012377 (3) | ref|XP_009758756.1| | 4e-84 | PREDICTED: protein NRT1/ PTR FAMILY 5.8 [Nicotiana sylvestris] ref|XP_009758757. |
This contig is upended
. : . : . : . : . : . :
rJMFF004K03+ CACCAAACAAGGCATGACGATGAAGAGAA
rJMFF017C24+ CACCAAACAAGGCATGACGATGAAGAGAA
____________________________________________________________
consensus CACCAAACAAGGCATGACGATGAAGAGAA
. : . : . : . : . : . :
rJMFF004K03+ ACATCGGACCCAATTTCAAGATCCCACCCGCCGCGCTTCAGAGCGCGATCACAGTGTCCA
rJMFF017C24+ GCATCGGACCCAATTTCAAGATCCCACCCGCCGCGCTTCAGAGCGCGATCACAGTGTCCA
rJMFF036H07+ TCCCACCCGCCGCGCTTCAGAGCGCGATCACAGTGTCCA
____________________________________________________________
consensus GCATCGGACCCAATTTCAAGATCCCACCCGCCGCGCTTCAGAGCGCGATCACAGTGTCCA
. : . : . : . : . : . :
rJMFF004K03+ TAATTCTTCTCATGCCTCTGTACGACAAGTACTTCATCCCCCTCGTTCGCGTCTTCACCC
rJMFF017C24+ TAATTCTTCTCATGCCTCTGTACGACAAGTACTTCATCCCCCTCGTTCGCGTCTTCACCC
rJMFF036H07+ TAATTCTTCTCATGCCTCTGTACGACAAGTACTTCATCCCCCTCGTTCGCGTCTTCACCC
____________________________________________________________
consensus TAATTCTTCTCATGCCTCTGTACGACAAGTACTTCATCCCCCTCGTTCGCGTCTTCACCC
. : . : . : . : . : . :
rJMFF004K03+ TCAACGACAAAGGCGTCACCGTGCGGCAAAGAATGGGGATCGGAATGTTTCTGTCGGTGA
rJMFF017C24+ TCAACGACAAAGGCGTCACCGTGCGGCAAAGAATGGGGATCGGAATGTTTCTGTCGGTGA
rJMFF036H07+ TCAACGACAAAGGCGTCACCGTGCGGCAAAGAATGGGGATCGGAATGTTTCTGTCGGTGA
____________________________________________________________
consensus TCAACGACAAAGGCGTCACCGTGCGGCAAAGAATGGGGATCGGAATGTTTCTGTCGGTGA
. : . : . : . : . : . :
rJMFF004K03+ TAGCCATGGTGATTGCCGCCTTCACGGACACAAAGAGGCTCGAAATCAGCAGAAATCCCG
rJMFF017C24+ TAGCCATGGTGATTGCCGCCTTCACGGACACAAAGAGGCTCGAAATCAGCAGAAATCCCG
rJMFF036H07+ TAGCCATGGTGATTGCCGCCTTCACGGACACAAAGAGGCTCGAAATCAGCAGAAATCCCG
____________________________________________________________
consensus TAGCCATGGTGATTGCCGCCTTCACGGACACAAAGAGGCTCGAAATCAGCAGAAATCCCG
. : . : . : . : . : . :
rJMFF004K03+ AGAATCTAAGCTCAGAAACAGTGCCGATGAGCATATTCTGGCTGCTTCCGCAGTACATCC
rJMFF017C24+ AGAATCTAAGCTCAGAAACAGTGCCGATGAGCATATTCTGGCTGCTTCCGCAGTACATCC
rJMFF036H07+ AGAATCTAAGCTCAGAAACAGTGCCGATGAGCATATTCTGGCTGCTTCCGCAGTACATCC
____________________________________________________________
consensus AGAATCTAAGCTCAGAAACAGTGCCGATGAGCATATTCTGGCTGCTTCCGCAGTACATCC
. : . : . : . : . : . :
rJMFF004K03+ TCCTCGGAATCTCCGACATCTTCACCGTGGTCGGGATGCAAGAGTTTTTCTACTCCGAAG
rJMFF017C24+ TCCTCGGAATCTCCGACATCTTCACCGTGGTCGGGATGCAAGAGTTTTTCTACTCCGAAG
rJMFF036H07+ TCCTCGGAATCTCCGACATCTTCACCGTGGTCGGGATGCAAGAGTTTTTCTACTCCGAAG
____________________________________________________________
consensus TCCTCGGAATCTCCGACATCTTCACCGTGGTCGGGATGCAAGAGTTTTTCTACTCCGAAG
. : . : . : . : . : . :
rJMFF004K03+ TCCCGGCGAACATGAGAACCTTAGGGATAGCTCTGTACACTAGCGTCTTCGGTTTCGGAA
rJMFF017C24+ TCCCGGCGAACATGAGAACCTTAGGGATAGCTCTGTACACTAGCGTCTTCGGTTTCGGAA
rJMFF036H07+ TCCCGGCGAACATGAGAACCTTAGGGATAGCTCTGTACACTAGCGTCTTCGGTTTCGGAA
____________________________________________________________
consensus TCCCGGCGAACATGAGAACCTTAGGGATAGCTCTGTACACTAGCGTCTTCGGTTTCGGAA
. : . : . : . : . : . :
rJMFF004K03+ GCTTCTTCAGCTCCCTGCTTATCTCCATTGTAGAACATTTCACAAGCTCCTCTGCAAATC
rJMFF017C24+ GCTTCTTCAGCTCCCTGCTTATCTCCATTGTAGAACATTTCACAAGCTCCTCTGCAAATC
rJMFF036H07+ GCTTCTTCAGCTCCCTGCTTATCTCCATTGTAGAACATTTCACAAGCTCCTCTGCAAATC
____________________________________________________________
consensus GCTTCTTCAGCTCCCTGCTTATCTCCATTGTAGAACATTTCACAAGCTCCTCTGCAAATC
. : . : . : . : . : . :
rJMFF004K03+ AGCATGGGTGGTTCTCTGATGATATGAAGGAAGCCCGTTTAGATAATTATTATTGGTTTC
rJMFF017C24+ AGCATGGGTGGTTCTCTGATGATATGAAGGAAGCCCGTTTAGATAATTATTATTGGTTTC
rJMFF036H07+ AGCATGGGTGGTTCTCTGATGATATGAAGGAAGCCCGTTTAGATAATTATTATTGGTTTC
____________________________________________________________
consensus AGCATGGGTGGTTCTCTGATGATATGAAGGAAGCCCGTTTAGATAATTATTATTGGTTTC
. : . : . : . : . : . :
rJMFF004K03+ TCGCCGTGTTAAGTGCTGTCAGCTTGATCTTATTCGTAATCTTCTGTAAGTTTAATGGTT
rJMFF017C24+ TCGCCGTGTTAAGTGCTGTCAGCTTGACCTTATTCGTAATCTTCTGTAAGTTTAATGGTT
rJMFF036H07+ TCGCCGTGTTAAGTGCTGTCAGCTTGACCTTATTCGTAATCTTCTGTAAGTTTAATGGTT
____________________________________________________________
consensus TCGCCGTGTTAAGTGCTGTCAGCTTGACCTTATTCGTAATCTTCTGTAAGTTTAATGGTT
. : . : . : . : . : . :
rJMFF004K03+ CTTGAAAGTTAATTTCAATCTGGATTTTATTATGCTCTACCAGTTTGGAATGGACTGTCA
rJMFF017C24+ CTTGAAAGTTAATTTCAATCTGGATTTTATTATGCTCTACCAGTTTGGAATGGACTGTCA
rJMFF036H07+ CTTGAAAGTTAATTTCAATCTGGATTTTATTATGCTCTACCAGTTTGGAATGGACTGTCA
____________________________________________________________
consensus CTTGAAAGTTAATTTCAATCTGGATTTTATTATGCTCTACCAGTTTGGAATGGACTGTCA
. : . : . : . : . : . :
rJMFF004K03+ GTAACATATGTAAATAT
rJMFF017C24+ GTAACATATGTAAATATTATTTTTGTAATTAATGTTGCGGCTAGCTACAATCATCAATC
rJMFF036H07+ GTAACATATGTAAATATTATTTTTGTAATTAATGTTGCGGCTAGCTACAATCATCAATCA
____________________________________________________________
consensus GTAACATATGTAAATATTATTTTTGTAATTAATGTTGCGGCTAGCTACAATCATCAATCA