Contig 012314:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025L21Sequence521002142 (7)gb|AAV88066.1|2e-05NBS-LRR protein [Ipomoea batatas]765012314 (4)ref|XP_011075746.1|3e-21PREDICTED: putative late blight resistance protein homolog R1A-10 [Sesamum indi
JMFF026N09Sequence481002142 (7)gb|AAV88066.1|2e-05NBS-LRR protein [Ipomoea batatas]756012314 (4)ref|XP_011075746.1|6e-20PREDICTED: putative late blight resistance protein homolog R1A-10 [Sesamum indi
JMSF008O07Sequence236002142 (7)688012314 (4)ref|XP_009618655.1|4e-13PREDICTED: putative late blight resistance protein homolog R1B-16 [Nicotiana to
JMSF048B16Sequence715002142 (7)gb|AAV88066.1|3e-19NBS-LRR protein [Ipomoea batatas]789012314 (4)ref|XP_011075746.1|6e-22PREDICTED: putative late blight resistance protein homolog R1A-10 [Sesamum indi

Alignment

This contig is upended


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rJMSF048B16+                                                                 ACAGA
                      ____________________________________________________________
consensus                                                                    ACAGA
 
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rJMSF048B16+          GTGCAATGATTGTATCGAGAACCTCGTCAATTTACAGCAGCTGGAGAGACTTTATATTCA
                      ____________________________________________________________
consensus             GTGCAATGATTGTATCGAGAACCTCGTCAATTTACAGCAGCTGGAGAGACTTTATATTCA
 
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rJMSF048B16+          TGCTGAATATCATGAATGGCATTCTACTAGTCCAAACATGATCCAGATTAACAGCCATAT
                      ____________________________________________________________
consensus             TGCTGAATATCATGAATGGCATTCTACTAGTCCAAACATGATCCAGATTAACAGCCATAT
 
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rJMSF048B16+          TTTTCTCTTGAAAAGCCTTAAGAGGTTAGAATTGCGAAGAAATTGTTTTGAGTGGAATGG
rJMFF026N09+                                  GTTAGAATTGCGAAGAAATTGTTTTGAGTGGAATGG
rJMFF025L21+                         CCTTAAGGGGTTAGAATTGCGAAGAAATTGTTTTGAGTGGAATGG
                      ____________________________________________________________
consensus             TTTTCTCTTGAAAAGCCTTAAGGGGTTAGAATTGCGAAGAAATTGTTTTGAGTGGAATGG
 
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rJMSF048B16+          AATTAATGTTCTTTGCAAGTTGCCTAGGTTGGAGGTGCTAAAGTTAAGAGCTGCATGTGT
rJMFF026N09+          AATTAATGTTCTTTGCAAGTTGCNTAGGTTGGAGGTGCTAAAGTTAAGAGCTGCATGTGT
rJMSF008O07+                                        GGAGGTGCTAAAGTTAAGAGCTGCATGNGT
rJMFF025L21+          AATTAATGTTCTTTGCAAGTTGCCTAGGTTGGAGGTGCTAAAGTTAAGAGCTGCATGTGT
                      ____________________________________________________________
consensus             AATTAATGTTCTTTGCAAGTTGCCTAGGTTGGAGGTGCTAAAGTTAAGAGCTGCATGTGT
 
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rJMSF048B16+          AGGCGAACAGTGGGAGCTTCCAGATGATGACAAATTCTGCCAGTTAATTGTTTTGATAAT
rJMFF026N09+          AGGCGAACAGTGGGAGCTTCCAGATGATGACAAATTCTGCCAGTTAATTGTTTTGATAAT
rJMSF008O07+          AGGCGAACAGNGGGAGCNTCCAGATGATGACAAATTCTNCCAGNTAATTGTTTTGATAAT
rJMFF025L21+          AGGCGAACAGTGGGAGCTTCCAGATGATGACAAATTCTGCCAGTTAATTGTTTTGATAAT
                      ____________________________________________________________
consensus             AGGCGAACAGTGGGAGCTTCCAGATGATGACAAATTCTGCCAGTTAATTGTTTTGATAAT
 
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rJMSF048B16+          TGATAGAACTGATCTCGAGGATTGGAAAGCCACTCGTTATCATTTCCCAAAACTTGAGCA
rJMFF026N09+          TGATAGAACTGATCTCGAGGATTGGAAAGCCACTCGTTATCATTTCCCAAAACTTGAGCA
rJMSF008O07+          TGATAGAACTGATCTCGAGGATTGGAAAGCCACTCGTTATCATTTCCCAAAACNTGAGCA
rJMFF025L21+          TGATAGAACTGATCTCGAGGATTGGAAAGCCACTCGTTATCATTTCCCAAAACTTGAGCA
                      ____________________________________________________________
consensus             TGATAGAACTGATCTCGAGGATTGGAAAGCCACTCGTTATCATTTCCCAAAACTTGAGCA
 
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rJMSF048B16+          CCTCTCCCTTTTTTCATGCGAGAAGTTGAAAGAGATACCTAGCGGGTTTGCAGAAATTTC
rJMFF026N09+          CCTCTCCCTTTTTTCATGCGAGAAGTTGAAAGAGATACCTAGCGGGTTTGCAGAAATTTC
rJMSF008O07+          CCTCTCCCTTTTTTCATGCGAGAAGTTGAAAGAGATACCTAGCGGGTTTGCAGAAATTTC
rJMFF025L21+          CCTCTCCCTTTTTTCATGCGAGAAGTTGAAAGAGATACCTAGCGGGTTTGCAGAAATTTC
                      ____________________________________________________________
consensus             CCTCTCCCTTTTTTCATGCGAGAAGTTGAAAGAGATACCTAGCGGGTTTGCAGAAATTTC
 
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rJMSF048B16+          AAGATTGAAATCAATCCAATTAAGGAGCTGCCGTCCTTCTGTGGTGGCTTCAGCCCAGGA
rJMFF026N09+          AAGATTGAAATCAATCCAATTAAGGAGCTGCCGTCCTTCTGTGGTGGCTTCAGCCCAGGA
rJMSF008O07+          AAGATTGAAATCAANCCAANTAAGGAGCTGCCGTCCTTCTGTGGTGGCNTCAGCCCAGGA
rJMFF025L21+          AAGATTGAAATCAATCCAATTAAGGAGCTGCCGTCCTTCTGTGGTGGCTTCAGCCCAGGA
                      ____________________________________________________________
consensus             AAGATTGAAATCAATCCAATTAAGGAGCTGCCGTCCTTCTGTGGTGGCTTCAGCCCAGGA
 
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rJMSF048B16+          AATCAAGGAAGAACAACTTGATTATTTGAATAATATTGTGGATGTGGTTGTGGCGGAGCA
rJMFF026N09+          AATCAAGGAAGAACAACTTGATTATTTGAATAATATTGTGGATGTGGTTGTGGCGGAGCA
rJMSF008O07+          AATCAAGGAAGAACAACTTGATNATTTGAATAATATTGTGGATGTGGTTGTGGCGGAGCA
rJMFF025L21+          AATCAAGGAAGAACAACTTGATTATTTGAATAATATTGTGGATGTGGTTGTGGCGGAGCA
                      ____________________________________________________________
consensus             AATCAAGGAAGAACAACTTGATTATTTGAATAATATTGTGGATGTGGTTGTGGCGGAGCA
 
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rJMSF048B16+          ACATGGCTACTCTTGGGT                                          
rJMFF026N09+          ACATGGCTACTCTTGGGTCTCTCTCCCTTTATCTTTCTTAATTACTTTCTCTCTAAACTT
rJMSF008O07+          ACATGGCTACTCTTGGGTCTCTCTCCCTTNATCNTTCTTAATTACTTTCTCTCTAAACTT
rJMFF025L21+          ACATGGCTACTCTTGGGTCTCTCTCCCTTTATCTTTCTTAATTACTTTCTCTCTAAACTT
                      ____________________________________________________________
consensus             ACATGGCTACTCTTGGGTCTCTCTCCCTTTATCTTTCTTAATTACTTTCTCTCTAAACTT
 
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rJMFF026N09+          CATTCACTTTCATCATTATATCCTAATTTAGTTTCAACGATTTATGACAGGTTTCTGAGC
rJMSF008O07+          CATTCACNTTCATCATNATATCCTAATTTAGTTTCAACGATNTATGACAGGTTTCTGAGC
rJMFF025L21+          CATTCACTTTCATCATTATATCCTAATTTAGTTTCAACGATTTATGACAGGTTTCTGAGC
                      ____________________________________________________________
consensus             CATTCACTTTCATCATTATATCCTAATTTAGTTTCAACGATTTATGACAGGTTTCTGAGC
 
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rJMFF026N09+          CTGAGTCTAATGAAGACGTGCCGTTTTTGGAAGAACTGGAAAATGAGCGTCTCCAGGAAA
rJMSF008O07+          CTGAGTCTAATGAAGACGTNCCGTTTTTGGAAGAACTGGAAAATGAGCGTCTCCAGNAAA
rJMFF025L21+          CTGAGTCTAATGAAGACGTGCCGTTTTTGGAAGAACTGGAAAATGAGCGTCTCCAGGAAA
                      ____________________________________________________________
consensus             CTGAGTCTAATGAAGACGTGCCGTTTTTGGAAGAACTGGAAAATGAGCGTCTCCAGGAAA
 
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rJMFF026N09+          TCTATAGAGAAATTGGTAGCTCTGAGTGAGAAAACCGTGCATCACTTTGTGCTTTAAAGT
rJMSF008O07+          TCTATAGAGAAATTGGTAGCTCNGAGTGAGAAAACCGNGCATCACNTTGTGCTNTAAAGN
rJMFF025L21+          TCTATAGAGAAATTGGTAGCTCTGAGTGAGAAAACCGTGCATCACTTTGTGCTTTAAAGT
                      ____________________________________________________________
consensus             TCTATAGAGAAATTGGTAGCTCTGAGTGAGAAAACCGTGCATCACTTTGTGCTTTAAAGT
 
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rJMFF026N09+          GACTTAGACTTGTCCTTTGTTGTGGTTTTTGTTTTAAAACGTTTGTTTCTATTTCATTCA
rJMSF008O07+          GACTTAGACTTGTCCTNTGTTGTGGTNTTTGTTTTAAAACGTNTGTTTCTATTTCATNCA
rJMFF025L21+          GACTTAGACTTGTCCTTTGTTGTGGTTTTTGTTTTAAAACGTTTGTTTCTATTTCATTCA
                      ____________________________________________________________
consensus             GACTTAGACTTGTCCTTTGTTGTGGTTTTTGTTTTAAAACGTTTGTTTCTATTTCATTCA
 
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rJMFF026N09+          TACTAGAAGTTTAATGTTTATATTAGTGTAAAAATTTTGGCTTTTGCAGTTGAGTTAAAT
rJMSF008O07+          TAC                                                         
rJMFF025L21+          TACTAGAAGTTTAATGTTTATATTAGTGTAAAAATTTTGGCTTTTGCAGTTGAGTTAAAT
                      ____________________________________________________________
consensus             TACTAGAAGTTTAATGTTTATATTAGTGTAAAAATTTTGGCTTTTGCAGTTGAGTTAAAT