| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF033N17 | Sequence | 530 | 010542 (6) | ref|XP_011096567.1| | 9e-51 | PREDICTED: cullin-4-like [Sesamum indicum] | 718 | 012364 (6) | gb|KDO78194.1| | 3e-122 | hypothetical protein CISIN_1g003648mg [Citrus sinensis] gb|KDO78195.1| hypotheti |
| JMSF001L08 | Sequence | 348 | 010542 (6) | gb|KJB66936.1| | 3e-13 | hypothetical protein B456_010G166800 [Gossypium raimondii] | 767 | 012364 (6) | ref|XP_009599227.1| | 7e-113 | PREDICTED: cullin-4 [Nicotiana tomentosiformis] |
| JMSF009P10 | Sequence | 291 | 010542 (6) | gb|KJB66936.1| | 2e-18 | hypothetical protein B456_010G166800 [Gossypium raimondii] | 709 | 012364 (6) | ref|XP_002305340.2| | 6e-99 | hypothetical protein POPTR_0004s14020g [Populus trichocarpa] gb|EEE85851.2| hypo |
| JMSF021H11 | Sequence | 666 | 010542 (6) | ref|XP_006361548.1| | 4e-76 | PREDICTED: cullin-4-like [Solanum tuberosum] | |||||
| JMSF025K20 | Sequence | 638 | 010542 (6) | ref|XP_006361548.1| | 4e-86 | PREDICTED: cullin-4-like [Solanum tuberosum] | 756 | 012364 (6) | gb|KDO78194.1| | 2e-132 | hypothetical protein CISIN_1g003648mg [Citrus sinensis] gb|KDO78195.1| hypotheti |
| JMSF034G24 | Sequence | 682 | 010542 (6) | ref|XP_006361548.1| | 3e-78 | PREDICTED: cullin-4-like [Solanum tuberosum] | 627 | 012364 (6) | ref|XP_009599227.1| | 9e-99 | PREDICTED: cullin-4 [Nicotiana tomentosiformis] |
This contig is upended
. : . : . : . : . : . :
JMSF025K20+ TTCA
____________________________________________________________
consensus TTCA
. : . : . : . : . : . :
JMSF025K20+ CATAGGTTCTGTCAAGATACAAAGCTATACCACGGATCGTCAATATCTGATCACAAAAGT
JMSF021H11+ CTGATCACAAAAGT
JMSF034G24+ GATCGTCAATATCTGATCACAAAAGT
____________________________________________________________
consensus CATAGGTTCTGTCAAGATACAAAGCTATACCACGGATCGTCAATATCTGATCACAAAAGT
. : . : . : . : . : . :
JMSF025K20+ CCTGCCAGCATTTCTCAACAAGTGATAAGAAAACCACCAAATCTTCACTTTGGCCAACCA
JMSF021H11+ CCTGCCAGCATTTCTCAACAAGTGATAAGAAAACCACCAAATCTTCACTTTGGCCAACCA
JMSF034G24+ CCTGCCAGCATTTCTCAACAAGTGATAAGAAAACCACCAAATCTTCACTTTGGCCAACCA
____________________________________________________________
consensus CCTGCCAGCATTTCTCAACAAGTGATAAGAAAACCACCAAATCTTCACTTTGGCCAACCA
. : . : . : . : . : . :
JMSF025K20+ AAGATTGCAATGCCACAGCTATGTGTGTTTCACACTCTTTTTCAATCCGTTGATAGAGAC
JMSF021H11+ AAGATTGCAATGCCACAGCTATGTGTGTTTCACACTCTTTTTCAATCCGTTGATAGAGAC
JMFF033N17+ CAATCCGTTGATAGAGAC
JMSF034G24+ AAGATTGCAATGCCACAGCTATGTGTGTTTCACACTCTTTTTCAATCCGTTGATAGAGAC
____________________________________________________________
consensus AAGATTGCAATGCCACAGCTATGTGTGTTTCACACTCTTTTTCAATCCGTTGATAGAGAC
. : . : . : . : . : . :
JMSF025K20+ TTCCACCCATCTTGTGCAGACAAAGGTCATTAACAGCCTGGTAGAGTTTTTCTAGATCAC
JMSF021H11+ TTCCACCCATCTTGTGCAGACAAAGGTCATTAACAGCCTGGTAGAGTTTTTCTAGATCAC
JMFF033N17+ TTCCACCCATCTTGTGCAGACAAAGGTCATTAACAGCCTGGTAGAGTTTTTCTAGATCAC
JMSF034G24+ TTCCACCCATCTTGTGCAGACAAAGGTCATTAACAGCCTGGTAGAGTTTTTCTAGATCAC
____________________________________________________________
consensus TTCCACCCATCTTGTGCAGACAAAGGTCATTAACAGCCTGGTAGAGTTTTTCTAGATCAC
. : . : . : . : . : . :
JMSF025K20+ ATGGATCAGGCTGTTTCAAGAATATTGCGTTAATTGCAGACTTAAGAGTTGCCCAGGTGT
JMSF021H11+ ATGGATCAGGCTGTTTCAAGAATATTGCGTTAATTGCAGACTTAAGAGTTGCCCAGGTGT
JMFF033N17+ ATGGATCAGGCTGTTTCAAGAATATTGCGTTAATTGCAGACTTAAGAGTTGCCCAGGTGT
JMSF034G24+ ATGGATCAGGCTGTTTCAAGAATATTGCGTTAATTGCAGACTTAAGAGTTGCCCAGGTGT
____________________________________________________________
consensus ATGGATCAGGCTGTTTCAAGAATATTGCGTTAATTGCAGACTTAAGAGTTGCCCAGGTGT
. : . : . : . : . : . :
JMSF009P10+ GCTTAATGACTAGCTTCT
JMSF025K20+ TTTCTTCAAAATTTGTGGGCAGAGTTGGTTTTGCTTTGACGAGCTTAATGACTAGCTTCT
JMSF021H11+ TTTCTTCAAAATTTGTGGGCAGAGTTGGTTTTGCTTTGACGAGCTTAATGACTAGCTTCT
JMFF033N17+ TTTCTTCAAAATTTGTGGGCAGAGTTGGTTTTGCTTTGACGAGCTTAATGACTAGCTTCT
JMSF034G24+ TTTCTTCAAAATTTGTGGGCAGAGTTGGTTTTGCTTTGACGAGCTTAATGACTAGCTTCT
____________________________________________________________
consensus TTTCTTCAAAATTTGTGGGCAGAGTTGGTTTTGCTTTGACGAGCTTAATGACTAGCTTCT
. : . : . : . : . : . :
JMSF009P10+ NGGCGGGCTGGGGAAGAGTGNCCTTCTTGCGAGACAAATTAGCAGTGGCGGCGCGTGTAG
JMSF025K20+ TGGCGGGCTGGGGAAGAGTGGCCTTCTTGCGAGACAAATTAGCAGTGGCGGCGCGTGTAG
JMSF021H11+ TGGCGGGCTGGGGAAGAGTGGCCTTCTTGCGAGACAAATTAGCAGTGGCGGCGCGTGTAG
JMFF033N17+ TGGCGGGCTGGGGAAGAGTGGCCTTCTTGCGAGACAAATTAGCAGTGGCGGCGCGTGTAG
JMSF034G24+ TGGCGGGCTGGGGAAGAGTGGCCTTCTTGCGAGACAAATTAGCAGTGGCGGCGCGTGTAG
JMSF001L08+ GAAGAGTGCCCTTCTTGCGAGACAAATTAGCAGTGGCGGCGCGTGTAG
____________________________________________________________
consensus TGGCGGGCTGGGGAAGAGTGGCCTTCTTGCGAGACAAATTAGCAGTGGCGGCGCGTGTAG
. : . : . : . : . : . :
JMSF009P10+ CGGACGCGCCGGGGCTGTCCAGATCCTCCATGCTAGCGGAGGAGGGGTCCTCATCGACGT
JMSF025K20+ CGGACGCGCCGGGGCTGTCCAGATCCTCCATGCTAGCGGAGGAGGGGTCCTCATCGACGT
JMSF021H11+ CGGACGCGCCGGGGCTGTCCAGATCCTCCATGCTAGCGGAGGAGGGGTCCTCATCGACGT
JMFF033N17+ CGGACGCGCCGGGGCTGTCCAGATCCTCCATGCTAGCGGAGGAGGGGTCCTCATCGACGT
JMSF034G24+ CGGACGCGCCGGGGCTGTCCAGATCCTCCATGCTAGCGGAGGAGGGGTCCTCATCGACGT
JMSF001L08+ CGGACGCGCCGGGGCTGTCCAGATCCTCCATGCTAGCGGAGGAGGGGTCCTCATCGACGT
____________________________________________________________
consensus CGGACGCGCCGGGGCTGTCCAGATCCTCCATGCTAGCGGAGGAGGGGTCCTCATCGACGT
. : . : . : . : . : . :
JMSF009P10+ CGGGATAGAAGTGGACGTGGTGCTGGCCGTTCTTGTTAGTGTCGAGAGAGCACGCGACGG
JMSF025K20+ CGGGATAGAAGTGGACGTGGTGCTGGCCGTTCTTGTTAGTGTCGAGAGAGCACGCGACGG
JMSF021H11+ CGGGATAGAAGTGGACGTGGTGGTGGCCGTTCTTGTTAGTGTCGAGAGAGCACGCGACGG
JMFF033N17+ CGGGATAGAAGTGGACGTGGTGCTGGCCGTTCTTGTTAGTGTCGAGAGAGCACGCGACGG
JMSF034G24+ CGGGATAGAAGTGGACGTGGTGCTGGCCGTTCTTGTTAGTGTCGAGAGAGCACGCGACGG
JMSF001L08+ CGGGATAGAAGTGGACGTGGTGCTGGCCGTTCTTGTTAGTGTCGAGAGAGCACGCGACGG
____________________________________________________________
consensus CGGGATAGAAGTGGACGTGGTGCTGGCCGTTCTTGTTAGTGTCGAGAGAGCACGCGACGG
. : . : . : . : . : . :
JMSF009P10+ CCTGCGACTTGGCCTTCTTCATTGGCGGAGGGCGGTGGAGTGGTGGCGCGCCGTCGCCGG
JMSF025K20+ CCTGCGACTTGGCCTTCTTCATTGGCGGAGGGCGGTGGAGTGGTGGCGCGCCGTCGCCGG
JMSF021H11+ CCTGCGACTTGGCCTTCTTCATTGGCGGAGGGCGGTGGAGTGGTGGCGCGCCGTCGCCGG
JMFF033N17+ CCTGCGACTTGGCCTTCTTCATTGGCGGAGGGCGGTGGAGTGGTGGCGCGCCGTCGCCGG
JMSF034G24+ CCTGCGACTTGGCCTTCTTCATTGGCGGAGGGCGGTGGAGTGGTGGCGCGCCGTCGCCGG
JMSF001L08+ CCTGCGACTTGGCCTTCTTCATTGGCGGAGGGCGGTGGAGTGGTGGCGCGCCGTCGCCGG
____________________________________________________________
consensus CCTGCGACTTGGCCTTCTTCATTGGCGGAGGGCGGTGGAGTGGTGGCGCGCCGTCGCCGG
. : . : . : . : . : . :
JMSF009P10+ CGGTGGCGGAGCAGGAGGAGTAGGGAGATGAGC
JMSF025K20+ CGGTGGCGGAGCAGGAGGAGTAGGGAGATGAGC
JMSF021H11+ CGGTGGCGGAGCAGGAGGAGTAGGGAGATGAGCGCTTGTTGGGGTTGGAGGTGGGTTGAG
JMFF033N17+ CGGTGGCGGAGCAGGAGGAGTAGGGAGATGAGCGCTTGTTGGGGTTGGAGGTGGGTTGAG
JMSF034G24+ CGGTGGCGGAGCAGGAGGAGTAGGGAGATGAGCGCTTGTTGGGGTTGGAGGTGGGTTGAG
JMSF001L08+ CGGTGGCGGAGCAGGAGGAGTAGGGAGATGAGCGCTTGTTGGGGTTGGAGGTGGGTTGAG
____________________________________________________________
consensus CGGTGGCGGAGCAGGAGGAGTAGGGAGATGAGCGCTTGTTGGGGTTGGAGGTGGGTTGAG
. : . : . : . : . : . :
JMSF021H11+ ACATATAGAAGAAAAGAAGAAAGCGAAATCTCAAGAGCTCATTGTCGAGCC
JMFF033N17+ ACATATAGAAGAAAAGAAGAAAGCGAAATCTC
JMSF034G24+ ACATATAGAAGAAAAGAAGAAAGCGAAATCTCAAGAGCTCATTGTCGAGCC
JMSF001L08+ ACATATAGAAGAAAAGAAGAAAGCGAAATCTCAAGAGCTCATTGTCGAGCCAAACGCATC
____________________________________________________________
consensus ACATATAGAAGAAAAGAAGAAAGCGAAATCTCAAGAGCTCATTGTCGAGCCAAACGCATC