Contig 010039:  Sequence
BLAST Hits against nr-aa DB Show

Alignment

This contig is upended


                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+                                                                   TGC
                      ____________________________________________________________
consensus                                                                      TGC
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          ATTCAAGCTACTGGCTTGACCGATATGCCGATGAGAGTGATTCATTCCAAAATGTCAAGG
                      ____________________________________________________________
consensus             ATTCAAGCTACTGGCTTGACCGATATGCCGATGAGAGTGATTCATTCCAAAATGTCAAGG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          AAGAATATATTGCTTCTACGTCATGGTATCGAGCACTGCAAATTCCTGATGCAGCTGTAT
                      ____________________________________________________________
consensus             AAGAATATATTGCTTCTACGTCATGGTATCGAGCACTGCAAATTCCTGATGCAGCTGTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          CCTTCGAAAGTAGACAACAATCACAACACCACTTTGCTAAGGTTTTAAGTCAAAAAGACA
rJMSF037J22+                                                          GTCAAAAAGACA
                      ____________________________________________________________
consensus             CCTTCGAAAGTAGACAACAATCACAACACCACTTTGCTAAGGTTTTAAGTCAAAAAGACA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          ACAACGTTACACGCCTTGTTTGGAATCCCGGATCTGAATTTGCTCATTGTGATTGTGAAT
rJMSF037J22+          ACAACGTTACACGCCTTGTTTGGAATCCCGGATCTGAATTTGCTCATTGTGATTGTGAAT
                      ____________________________________________________________
consensus             ACAACGTTACACGCCTTGTTTGGAATCCCGGATCTGAATTTGCTCATTGTGATTGTGAAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          GGTCAATGCAAGGAAACCTTTGCAAGCATGTCATCAAGGTCAATATGATATGCGGAAGTA
rJMSF037J22+          GGTCAATGCAAGGAAACCTTTGCAAGCATGTCATCAAGGTCAATATGATATGCGGAAGTA
                      ____________________________________________________________
consensus             GGTCAATGCAAGGAAACCTTTGCAAGCATGTCATCAAGGTCAATATGATATGCGGAAGTA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          TTCAGGGCTTTCGATCTTCCATGTCATTTCAGTCATTCCAAGAGATTTTAATGAATCTAT
rJMSF037J22+          TTCAGGGCTTTCGATCTTCCATGTCATTTCAGTCATTCCAAGAGATTTTAATGAATCTAT
                      ____________________________________________________________
consensus             TTCAGGGCTTTCGATCTTCCATGTCATTTCAGTCATTCCAAGAGATTTTAATGAATCTAT
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          TGAAAAAGCCAATGGATGACTCAGTAGCACTTGATCTCTCAACAGCGTGGACACAGCAGA
rJMSF037J22+          TGAAAAAGCCAATGGATGACTCAGTAGCACTTGATCTCTCAACAGCGTGGACACAGCAGA
                      ____________________________________________________________
consensus             TGAAAAAGCCAATGGATGACTCAGTAGCACTTGATCTCTCAACAGCGTGGACACAGCAGA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          TGCTTGATCAGATTCAAAATCTTGTTGAGCTGAATAGTTCCAATAACATAGGCAACATAG
rJMSF037J22+          TGCTTGATCAGATTCAAAATCTTGTTGAGCTGAATAGTTCCAATAACATAGGCAACATAG
                      ____________________________________________________________
consensus             TGCTTGATCAGATTCAAAATCTTGTTGAGCTGAATAGTTCCAATAACATAGGCAACATAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          TTAACAATATGCCTTTGAGATGGATATCTAGGAAACGCAGAACATCCCGTGGCAAACCAA
rJMSF037J22+          TTAACAATATGCCTTTGAGATGGATATCTAGGAAACGCAGAACATCCCGTGGCAAACCAA
                      ____________________________________________________________
consensus             TTAACAATATGCCTTTGAGATGGATATCTAGGAAACGCAGAACATCCCGTGGCAAACCAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          CATCAGCACTTACTCTGCCCCCTAGTTCTCAGAGTGGTGCAATAAATTCTACTGCACGCA
rJMSF037J22+          CATCAGCACTTACTCTGCCCCCTAGTTCTCAGAGTGGTGCAATAAATTCTACTGCACGCA
                      ____________________________________________________________
consensus             CATCAGCACTTACTCTGCCCCCTAGTTCTCAGAGTGGTGCAATAAATTCTACTGCACGCA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          GCAAGAATAGAAAGCGGAAAAGATTGTCAAAGATAGGCTGAATGCTTATTTTGTCCTTAG
rJMSF037J22+          GCAAGAATAGAAAGCGGAAAAGATTGTCAAAGATAGGCTGAATGCTTATTTTGTCCTTAG
                      ____________________________________________________________
consensus             GCAAGAATAGAAAGCGGAAAAGATTGTCAAAGATAGGCTGAATGCTTATTTTGTCCTTAG
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          ACAATGTTGCCGGAGTGTTATGCTTCATCAGCCATGCAGCTAGATGCTGGAGGAGTTTAA
rJMSF037J22+          ACAATGTTGCCGGAGTGTTATGCTTCATCAGCCATGCAGCTAGATGCTGGAGGAGTTTAA
                      ____________________________________________________________
consensus             ACAATGTTGCCGGAGTGTTATGCTTCATCAGCCATGCAGCTAGATGCTGGAGGAGTTTAA
 
                          .    :    .    :    .    :    .    :    .    :    .    :
rJMSF043C15+          TTGCTTTAGATGCTCTGGCTCCATGCAAGGTCATTCCTTTAATTTCATATTTGCAATCAA
rJMSF037J22+          TTGCTTTAGATGCTCTGGCTCCATGCAAGGTCATTCCTTTAATTTCATATTTGCAATCAA
                      ____________________________________________________________
consensus             TTGCTTTAGATGCTCTGGCTCCATGCAAGGTCATTCCTTTAATTTCATATTTGCAATCAA