Contig 009168:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF004I20Sequence498009168 (5)ref|XP_009802962.1|8e-22PREDICTED: R3H domain-containing protein 2-like isoform X1 [Nicotiana sylvestri690006805 (4)
JMFF010K03Sequence611009168 (5)ref|XP_009802962.1|3e-48PREDICTED: R3H domain-containing protein 2-like isoform X1 [Nicotiana sylvestri688006805 (4)
JMSF002P05Sequence276009168 (5)750006805 (4)emb|CDO99895.1|1e-19unnamed protein product [Coffea canephora]
JMSF008H11Sequence285009168 (5)ref|XP_010312532.1|49.7PREDICTED: R3H domain-containing protein 2-like [Solanum lycopersicum]652006805 (4)
JMSF042N13Sequence785009168 (5)ref|XP_009802962.1|3e-73PREDICTED: R3H domain-containing protein 2-like isoform X1 [Nicotiana sylvestri

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF042N13+ ATCCT
                      ____________________________________________________________
consensus ATCCT
 
. : . : . : . : . : . :
JMSF042N13+ GGGGAAAAGTTACTGGAATATCAGCCAGCCGAATTGAAGGCATCCGACATTCAGAAGTTT
                      ____________________________________________________________
consensus GGGGAAAAGTTACTGGAATATCAGCCAGCCGAATTGAAGGCATCCGACATTCAGAAGTTT
 
. : . : . : . : . : . :
JMSF042N13+ TGCGTACAATAATTCTTGAAGCAGAACCATCTGGCACACTACTGTCCACTAAGACCGTTG
                      ____________________________________________________________
consensus TGCGTACAATAATTCTTGAAGCAGAACCATCTGGCACACTACTGTCCACTAAGACCGTTG
 
. : . : . : . : . : . :
JMFF010K03+ AGTGAGTAGTGCTGTGCTACACGATGAGCTGCCAATCGCAAGTACGAGGTAGGAA
JMSF042N13+ ACTGCAGTGAGTAGTGCTGTGCTACACGATGAGCTGCCAATCGCAAGTACGAGGTAGGAA
                      ____________________________________________________________
consensus ACTGCAGTGAGTAGTGCTGTGCTACACGATGAGCTGCCAATCGCAAGTACGAGGTAGGAA
 
. : . : . : . : . : . :
JMFF010K03+ GTTGTTGGAACTCCATCTGTTGCTGAGTTGGATCCTTGATGAACTTTTCAACATCCTGCT
JMFF004I20+ CCTGCT
JMSF042N13+ GTTGTTGGAACTCCATCTGTTGCTGAGTTGGATCCTTGATGAACTTTTCAACATCCTGCT
                      ____________________________________________________________
consensus GTTGTTGGAACTCCATCTGTTGCTGAGTTGGATCCTTGATGAACTTTTCAACATCCTGCT
 
. : . : . : . : . : . :
JMFF010K03+ CCATTCTTAGAACAGAAAGGCGCTCCCGAGGGTTTTGCAAAGCCTCCCGGAGAAACTGAT
JMFF004I20+ CCATTCTTAGAACAGAAAGGCGCTCCCGAGGGTTTTGCAAAGCCTCCCGGAGAAACTGAT
JMSF042N13+ CCATTCTTAGAACAGAAAGGCGCTCCCGAGGGTTTTGCAAAGCCTCCCGGAGAAACTGAT
                      ____________________________________________________________
consensus CCATTCTTAGAACAGAAAGGCGCTCCCGAGGGTTTTGCAAAGCCTCCCGGAGAAACTGAT
 
. : . : . : . : . : . :
JMFF010K03+ CAACGGAATTGACGATATCTTCGGGAACACCCGAAGCAGGAGCTGAGCTACTCGACGCAG
JMFF004I20+ CAACGGAATTGACGATATCTTCGGGAACACCCGAAGCAGGAGCTGAGCTACTCGACGCAG
JMSF042N13+ CAACGGAATTGACGATATCTTCGGGAACACCCGAAGCAGGAGCTGAGCTACTCGACGCAG
                      ____________________________________________________________
consensus CAACGGAATTGACGATATCTTCGGGAACACCCGAAGCAGGAGCTGAGCTACTCGACGCAG
 
. : . : . : . : . : . :
JMFF010K03+ ACTCCGAATTCGGAGCTGAAGCCGAAGAAGAATCGGCGAGGTCACATTGAGCATTAGAGT
JMFF004I20+ ACTCCGAATTCGGAGCTGAAGCCGAAGAAGAATCGGCGAGGTCACATTGAGCATTAGAGT
JMSF042N13+ ACTCCGAATTCGGAGCTGAAGCCGAAGAAGAATCGGCGAGGTCACATTGAGCATTAGAGT
                      ____________________________________________________________
consensus ACTCCGAATTCGGAGCTGAAGCCGAAGAAGAATCGGCGAGGTCACATTGAGCATTAGAGT
 
. : . : . : . : . : . :
JMFF010K03+ CGTTGGAAGAAGAAAGCATCAGGCGGCGCACGCTGGCGTCCAGGTCAGCCACCTCCCATG
JMSF008H11+ CGCTGGCGTCCAGGTCAGCCACCTCCCATG
JMFF004I20+ CGTTGGAAGAAGAAAGCATCAGGCGGCGCACGCTGGCGTCCAGGTCAGCCACCTCCCATG
JMSF042N13+ CGTTGGAAGAAGAAAGCATCAGGCGGCGCACGCTGGCGTCCAGGTCAGCCACCTCCCATG
                      ____________________________________________________________
consensus CGTTGGAAGAAGAAAGCATCAGGCGGCGCACGCTGGCGTCCAGGTCAGCCACCTCCCATG
 
. : . : . : . : . : . :
JMFF010K03+ TCTCCGGCGGAGCTCCAAGATCCTCCGCCGCAGAGACGGACCCCTCCATGCTCTTCAAGT
JMSF008H11+ TCTCCGGCGGAGCTCCAAGATCCTCCGCCGCAGAGACGGACCCCTCCATGCTCTTCAAGT
JMFF004I20+ TCTCCGGCGGAGCTCCAAGATCCTCCGCCGCAGAGACGGACCCCTCCATGCTCTTCAAGT
JMSF042N13+ TCTCCGGCGGAGCTCCAAGATCCTCCGCCGCAGAGACGGACCCCTCCATGCTCTTCAAGT
JMSF002P05+ CCGCCGCAGAGACGGACCCCTCCATGCTCTTCAAGT
                      ____________________________________________________________
consensus TCTCCGGCGGAGCTCCAAGATCCTCCGCCGCAGAGACGGACCCCTCCATGCTCTTCAAGT
 
. : . : . : . : . : . :
JMFF010K03+ TTCACCTCCGAACAGAAAAAAAATATGAAAATTGATGTACTAAGAAAACCCCCAGCGGAC
JMSF008H11+ TTCACCTCCGAACAGAAAAAAAATATGAAAATTGATGTACTAAGAAAACCCCCAGCGGAC
JMFF004I20+ TTCACCTCCGAACAGAAAAAAAATATGAAAATTGATGTACTAAGAAAACCCCCAGCGGAC
JMSF042N13+ TTCACCTCCGAACAGAAAAAAAATATGAAAATTGATGTACTAAGAAAACCCCCAGCGGAC
JMSF002P05+ TTCACCTCCGAACAGAAAAAAAATATGAAAATTGATGTACTAAGAAAACCCCCAGCGGAC
                      ____________________________________________________________
consensus TTCACCTCCGAACAGAAAAAAAATATGAAAATTGATGTACTAAGAAAACCCCCAGCGGAC
 
. : . : . : . : . : . :
JMFF010K03+ GCTCATCAAAGCGAGCTGAAATTCGACGTAGATTTGAGAAAATCGCATAGTTTCGTAGGA
JMSF008H11+ GCTCATCAAAGCGAGCTGAAATTCGACGTAGATTTGAGAAAATCGCATAGTTTCGTAGGA
JMFF004I20+ GCTCATCAAAGCGAGCTGAAATTCGACGTAGATTTGAGAAAATCGCATAGTTTCGTAGGA
JMSF042N13+ GCTCATCAAAGCGAGCTGAAATTCGACGTAGATTTGAGAAAATCGCATAGTTTCGTAGGA
JMSF002P05+ GCTCATCAAAGCGAGCTGAAATTCGACGTAGATTTGAGAAAATCGCATAGTTTCGTAGGA
                      ____________________________________________________________
consensus GCTCATCAAAGCGAGCTGAAATTCGACGTAGATTTGAGAAAATCGCATAGTTTCGTAGGA
 
. : . : . : . : . : . :
JMFF010K03+ AGAAATAGAGAAAGCGTAAGCTTAGAGAGAGAGGGGGAGAGCGATTAGGGTTTCGAGAAG
JMSF008H11+ AGAAATAGAGAAAGCGTAAGCTTAGAGAGAGAGGGGGAGAGCGATTAGGGTTTCGAGAAG
JMFF004I20+ AGAAATAGAGAAAGCGTAAGCTTAGAGAGAGAGGGGGAGAGCGATTAGGGTTTCGAGAAG
JMSF042N13+ AGAAATAGAGAAAGCGTAAGCTTAGAGAGAGAGGGGGAGAGCGATTAGGGTTTCGAGAAG
JMSF002P05+ AGAAATAGAGAAAGCGTAAGCTTAGAGAGAGAGGGGGAGAGCGATTAGGGTTTCGAGAAG
                      ____________________________________________________________
consensus AGAAATAGAGAAAGCGTAAGCTTAGAGAGAGAGGGGGAGAGCGATTAGGGTTTCGAGAAG
 
. : . : . : . : . : . :
JMFF010K03+ TAGATAGAAAAT
JMSF008H11+ TAGATAGAAAA
JMFF004I20+ TAGATAGAAAAT
JMSF042N13+ TAGATAGAAAATGGGGTTTGTGGATTGTAGTAAGGAAAGGCCAAAATATGATTTCCCAGC
JMSF002P05+ TAGATAGAAAATGGGGTTTGTGGATTGTAGTAAGGAAAGGCCAAAATATGATTTTCCAGC
                      ____________________________________________________________
consensus TAGATAGAAAATGGGGTTTGTGGATTGTAGTAAGGAAAGGCCAAAATATGATTTTCCAGC