Contig 008590:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMCP015H04Sequence459008590 (5)ref|XP_010088502.1|2e-16Mismatch repair endonuclease PMS2 [Morus notabilis] gb|EXB36415.1| Mismatch repa
JMFS068C05Sequence638008590 (5)gb|KDP28142.1|3e-87hypothetical protein JCGZ_13913 [Jatropha curcas]
JMFS068C07Sequence617008590 (5)gb|KDP28142.1|2e-87hypothetical protein JCGZ_13913 [Jatropha curcas]
JMSF036C16Sequence710009454 (3)ref|XP_009598046.1|5e-109PREDICTED: DNA mismatch repair protein PMS1 isoform X3 [Nicotiana tomentosiform766008590 (5)gb|KDP28142.1|2e-116hypothetical protein JCGZ_13913 [Jatropha curcas]
JMSF036E06Sequence669009454 (3)ref|XP_009598046.1|9e-111PREDICTED: DNA mismatch repair protein PMS1 isoform X3 [Nicotiana tomentosiform734008590 (5)gb|KDP28142.1|1e-86hypothetical protein JCGZ_13913 [Jatropha curcas]

Alignment

This contig is upended


. : . : . : . : . : . :
JMCP015H04+ ACAACTATCTAACAGGCTCATCAGTACTTTTCCCATTAAATATA
                      ____________________________________________________________
consensus ACAACTATCTAACAGGCTCATCAGTACTTTTCCCATTAAATATA
 
. : . : . : . : . : . :
JMCP015H04+ TCCGAATTCACACGGTTGAGTTACGGAGGAAAAATATGTAACGGATAATGGGTTGCAGGC
rJMSF036E06- ATGTAACGGATAATGGGTTGCAGGC
                      ____________________________________________________________
consensus TCCGAATTCACACGGTTGAGTTACGGAGGAAAAATATGTAACGGATAATGGGTTGCAGGC
 
. : . : . : . : . : . :
JMCP015H04+ TCTTTTCTTACCTGATTACATTGAAAAAGACTACAATAACATCCATGCAACTCAAAAACT
rJMSF036E06- TCTTTTCTTACCTGATTACATTGAAAAAGACTACAATAACATCCATGCAACTCAAAAACT
                      ____________________________________________________________
consensus TCTTTTCTTACCTGATTACATTGAAAAAGACTACAATAACATCCATGCAACTCAAAAACT
 
. : . : . : . : . : . :
JMCP015H04+ GATTGTATATACAAAATTTTCACCTATTTCACAGGGTTCAAAATAAGTTGGTGGCAGTGC
JMFS068C05+ CAGGGTTCAAAATAAGTTGGTGGCAGTGC
rJMSF036E06- GATTGTATATACAAAATTTTCACCTATTTCACAGGGTTCAAAATAAGTTGGTGGCAGTGC
JMFS068C07+ AGGGTTCAAAATAAGTTGGTGGCAGTGC
rJMSF036C16- CAGGGTTCAAAATAAGTTGGTGGCAGTGC
                      ____________________________________________________________
consensus GATTGTATATACAAAATTTTCACCTATTTCACAGGGTTCAAAATAAGTTGGTGGCAGTGC
 
. : . : . : . : . : . :
JMCP015H04+ ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
JMFS068C05+ ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
rJMSF036E06- ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
JMFS068C07+ ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
rJMSF036C16- ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
                      ____________________________________________________________
consensus ATAACTTACGGGACAAAACATTTTGCAAGCCTTCTTGATTCGATTCCCCTTTTGTATTTT
 
. : . : . : . : . : . :
JMCP015H04+ AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
JMFS068C05+ AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
rJMSF036E06- AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
JMFS068C07+ AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
rJMSF036C16- AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
                      ____________________________________________________________
consensus AGGTCGGATCAGTACAACACAAGTAAAGGGTTCACAATGTTGGATCTGGATCTAACCTTT
 
. : . : . : . : . : . :
JMCP015H04+ TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
JMFS068C05+ TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
rJMSF036E06- TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
JMFS068C07+ TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
rJMSF036C16- TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
                      ____________________________________________________________
consensus TATGTACAGTGGTCAAGTCAATCAAGTGACGCATCGTTGGTCTCCCATGCGGACAGTTCC
 
. : . : . : . : . : . :
JMCP015H04+ AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCC
JMFS068C05+ AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
rJMSF036E06- AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
JMFS068C07+ AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
rJMSF036C16- AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
                      ____________________________________________________________
consensus AAGGAGACTTCAAGTGTGCCAAATGTTCAAGTATCTTTTGCATCTCATTTCTCCCCAGTG
 
. : . : . : . : . : . :
JMFS068C05+ GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
rJMSF036E06- GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
JMFS068C07+ GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
rJMSF036C16- GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
                      ____________________________________________________________
consensus GATCTCCAATCATAACAGATGATCTGCAAGCTCGTGATGCTAACATTGCACGTACTCTAG
 
. : . : . : . : . : . :
JMFS068C05+ GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
rJMSF036E06- GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
JMFS068C07+ GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
rJMSF036C16- GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
                      ____________________________________________________________
consensus GGGGGCAAATTGAATCAGATGTATCCTTTCTGTAACTAAGCGTGATATGACAGTCTTCTT
 
. : . : . : . : . : . :
JMFS068C05+ GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
rJMSF036E06- GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
JMFS068C07+ GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
rJMSF036C16- GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
                      ____________________________________________________________
consensus GGCTGCTGGCAAGAATAGAAATTAGTTCCTTCACATCTGCAACTCCAAAAGTTATGTTTT
 
. : . : . : . : . : . :
JMFS068C05+ TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
rJMSF036E06- TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
JMFS068C07+ TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
rJMSF036C16- TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
                      ____________________________________________________________
consensus TACTGAAAGGAACTGCTTTTAGATTGAAGCGAAGCCCAGGAGGAGCATGCAAATCTTCTT
 
. : . : . : . : . : . :
JMFS068C05+ CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
rJMSF036E06- CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
JMFS068C07+ CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
rJMSF036C16- CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
                      ____________________________________________________________
consensus CCAAGGAAAACCCATTTTTCCTTATAGTGTCCATGTTCATGGAAACAACTATTTCCTCTT
 
. : . : . : . : . : . :
JMFS068C05+ CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAA
rJMSF036E06- CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAA
JMFS068C07+ CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAA
rJMSF036C16- CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAAAATTGTTGACT
                      ____________________________________________________________
consensus CAGGAGATAAATCCATCTTCAAGGGCCGAAGCAAAGGTTGCTGGTTTAAAATTGTTGACT
 
. : . : . : . : . : . :
rJMSF036C16- CTGATAATCGTTCATAGTTATATTTTTCATCTGCGGCATGCTGATCAACAATAAAAAGGT
                      ____________________________________________________________
consensus CTGATAATCGTTCATAGTTATATTTTTCATCTGCGGCATGCTGATCAACAATAAAAAGGT
 
. : . : . : . : . : . :
rJMSF036C16- CTCGATCTAACTTGCCAATGATAAATCCAAGATGGAATTGCCCAATGACCTTCATTTGAG
                      ____________________________________________________________
consensus CTCGATCTAACTTGCCAATGATAAATCCAAGATGGAATTGCCCAATGACCTTCATTTGAG