Contig 008320:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF026F22Sequence589010236 (5)769008320 (4)ref|XP_009765667.1|2e-35PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian
JMFF027M23Sequence609010236 (5)ref|XP_009765667.1|3e-32PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian731008320 (4)ref|XP_009765667.1|1e-30PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian
JMFF037M20Sequence570010236 (5)ref|XP_009765667.1|3e-27PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian791008320 (4)ref|XP_009765667.1|1e-36PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian
JMFF043D18Sequence607010236 (5)ref|XP_009765667.1|3e-32PREDICTED: pentatricopeptide repeat-containing protein At1g63150-like [Nicotian640008320 (4)ref|XP_011095140.1|2e-09PREDICTED: pentatricopeptide repeat-containing protein At1g62680, mitochondrial

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF026F22+ CGGCGGGNCAGGAA
rJMFF037M20+ A
                      ____________________________________________________________
consensus CGGCGGGNCAGGAA
 
. : . : . : . : . : . :
rJMFF026F22+ TGAATGAGTGGGTGTTAAGGGATGCGTACGAGGAGTTCGACAGAATGCGCGAGAGAAAAA
rJMFF027M23+ TCGACAGAATGCGCGAGAGAAAAA
rJMFF037M20+ TGAATGAGTGGGTGTTAAGGGATGCGTACGAGGTGTTCGACAGAATGCGCGAGAGAAAAA
                      ____________________________________________________________
consensus TGAATGAGTGGGTGTTAAGGGATGCGTACGAGGTGTTCGACAGAATGCGCGAGAGAAAAA
 
. : . : . : . : . : . :
rJMFF026F22+ TTGTGGTTGAACACCGCGCATATGAGCTTGTGATTGAAGCCTTGTGTAATGGGAAGGAGG
rJMFF027M23+ TTGTGGTTGAACACCGCGCATATGAGCTTGTGATTGAAGCCTTGTGTAATGGGAAGGAGG
rJMFF037M20+ TTGTGGTTGAACACCGCGCATATGAGCTTGTGATTGAAGCCTTGTGTAATGGGAAGGAGG
                      ____________________________________________________________
consensus TTGTGGTTGAACACCGCGCATATGAGCTTGTGATTGAAGCCTTGTGTAATGGGAAGGAGG
 
. : . : . : . : . : . :
rJMFF026F22+ TAGACAAAGCTCTGGCAAGTTTGGTGGAGATGGTTAGAATTGGGTATTCCCCAGGGAGAT
rJMFF027M23+ TAGACAAAGCTCTGGCAAGTTTGGTGGAGATGGTTAGAATTGGGTATTCCCCAGGGAGAT
rJMFF037M20+ TAGACAAAGCTCTGGCAAGTTTGGTGGAGATGGTTAGAATTGGGTATTCCCCAGGGAGAT
                      ____________________________________________________________
consensus TAGACAAAGCTCTGGCAAGTTTGGTGGAGATGGTTAGAATTGGGTATTCCCCAGGGAGAT
 
. : . : . : . : . : . :
rJMFF026F22+ TCACCTTCTGCAATGTCATTCGTGCGCTTTGTGCAGATGGAAAGGTGGATGGCGCCTTAT
rJMFF027M23+ TCACCTTCTGCAATGTCATTCGTGCGCTTTGTGCAGATGGAAAGGTGGATGGCGCCTTAT
rJMFF037M20+ TCACCTTCTGCAATGTCATTCGTGCGCTTTGTGCAGATGGAAAGGTGGATGGCGCCTTAT
rJMFF043D18+ GCAGATGGAAAGGTGGATGGCGCCTTAT
                      ____________________________________________________________
consensus TCACCTTCTGCAATGTCATTCGTGCGCTTTGTGCAGATGGAAAGGTGGATGGCGCCTTAT
 
. : . : . : . : . : . :
rJMFF026F22+ CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGAGTTCCTCCATATAACA
rJMFF027M23+ CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGATTTCCTCCATATAACA
rJMFF037M20+ CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGAGTTCCTCCATATAACA
rJMFF043D18+ CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGATTTCCTCCATATAACA
                      ____________________________________________________________
consensus CAGTGCTAAGCTTAATGCATAGACGCTCAAGATTCTGGGTTGGATTTCCTCCATATAACA
 
. : . : . : . : . : . :
rJMFF026F22+ TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
rJMFF027M23+ TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
rJMFF037M20+ TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
rJMFF043D18+ TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
                      ____________________________________________________________
consensus TACTGATCAAGGAGCTGAATCGACAAGGAAGAGCATTGGATGCTCGCAATGTGTATGCTG
 
. : . : . : . : . : . :
rJMFF026F22+ CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
rJMFF027M23+ CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
rJMFF037M20+ CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
rJMFF043D18+ CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
                      ____________________________________________________________
consensus CTGCGTTGAAAAGAGGATTATTGGTGCCAAGGAAGAAACCTATTCAGTTTTCAGCTAAAG
 
. : . : . : . : . : . :
rJMFF026F22+ CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
rJMFF027M23+ CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
rJMFF037M20+ CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
rJMFF043D18+ CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
                      ____________________________________________________________
consensus CTCAGGCTCCTCATATTGCAAATGGTTAGATTCTATTGCTTTGTGAGATTTGCCACGGAT
 
. : . : . : . : . : . :
rJMFF026F22+ CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
rJMFF027M23+ CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
rJMFF037M20+ CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
rJMFF043D18+ CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
                      ____________________________________________________________
consensus CAGATCTATTAAGACTCTGCATTCACCGAGTCAAATGTTGGTGCGCACAAGAGATCTCTG
 
. : . : . : . : . : . :
rJMFF026F22+ TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
rJMFF027M23+ TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
rJMFF037M20+ TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
rJMFF043D18+ TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
                      ____________________________________________________________
consensus TCTCTCTGTCCACTTTGGTTATAATCCTTACACTGCCGTTGCCGTGTTTCGAACGGTCTC
 
. : . : . : . : . : . :
rJMFF026F22+ TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
rJMFF027M23+ TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
rJMFF037M20+ TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
rJMFF043D18+ TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
                      ____________________________________________________________
consensus TTTTTCAAATATTGCTTACTAAACCACTAAGTTAAGTTCATGTCAATTCTTTCTCCCTCG
 
. : . : . : . : . : . :
rJMFF026F22+ CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
rJMFF027M23+ CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
rJMFF037M20+ CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
rJMFF043D18+ CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
                      ____________________________________________________________
consensus CTCTGTATTATTGTAATTCTATCCCTTTATCATTCTTGTTCCATTTAGGACGCTTCTTAC
 
. : . : . : . : . : . :
rJMFF026F22+ CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCT
rJMFF027M23+ CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCTTGTAAATTGTAT
rJMFF037M20+ CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCTTGTAAATTGTATTGTTTAATAATAA
rJMFF043D18+ CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCTTGTAAATTGTATTGTTTAATAATAA
                      ____________________________________________________________
consensus CTTTTTAAATAGGTCTCTTCATGTTTCATGTATCTTGTAAATTGTATTGTTTAATAATAA
 
. : . : . : . : . : . :
rJMFF037M20+ A
rJMFF043D18+ ATTTCTTGTCATAGTTTCAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus ATTTCTTGTCATAGTTTCAAAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG