Contig 007810:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013B02Sequence498007810 (2)ref|XP_006358558.1|2e-27PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog 768007184 (3)ref|XP_009771014.1|1e-55PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog
JMSF037J04Sequence623007810 (2)ref|XP_006358558.1|3e-52PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog 707007184 (3)ref|XP_009771014.1|5e-44PREDICTED: putative RNA polymerase II subunit B1 CTD phosphatase RPAP2 homolog

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF037J04+ GGACAGCTACCAGCAAATGCTCG
                      ____________________________________________________________
consensus GGACAGCTACCAGCAAATGCTCG
 
. : . : . : . : . : . :
JMSF037J04+ ACTATTCACACAACAATTTGTTGAGCAGTACATGTAGGTTTCACGAAGATCATATATTTT
                      ____________________________________________________________
consensus ACTATTCACACAACAATTTGTTGAGCAGTACATGTAGGTTTCACGAAGATCATATATTTT
 
. : . : . : . : . : . :
JMSF037J04+ ATGCTCCCTCAAGGCAATGCGATACCGACCTTTGTGAGGCCTATCAGATGGCAAAAAGTT
JMSF013B02+ ATCAGATGGCAAAAAGTT
                      ____________________________________________________________
consensus ATGCTCCCTCAAGGCAATGCGATACCGACCTTTGTGAGGCCTATCAGATGGCAAAAAGTT
 
. : . : . : . : . : . :
JMSF037J04+ GCTGCAAAGTGGATAACCGCACATGTTTACTATTGTTCTTTCTGTGACAACATCTTGATA
JMSF013B02+ GCTGCAAAGTGGATAACCGCACATGTTTACTATTGTTCTTTCTGTGACAACATCTTGATA
                      ____________________________________________________________
consensus GCTGCAAAGTGGATAACCGCACATGTTTACTATTGTTCTTTCTGTGACAACATCTTGATA
 
. : . : . : . : . : . :
JMSF037J04+ ATCACTACGACACATCAAAGACCCAGCAGCAAGGAGTTTATTCTCATCTTGAATGCCATC
JMSF013B02+ ATCACTACGACACATCAAAGACCCAGCAGCAAGGAGTTTATTCTCATCTTGAATGCCATC
                      ____________________________________________________________
consensus ATCACTACGACACATCAAAGACCCAGCAGCAAGGAGTTTATTCTCATCTTGAATGCCATC
 
. : . : . : . : . : . :
JMSF037J04+ CAGAAGACAAAGTTGCAGCTTGTGGACAGCATCTTTCACAGTGGTTGCTTCTGTCTTAGT
JMSF013B02+ CAGAAGACAAAGTTGCAGCTTGTGGACAGCATCTTTCACAGTGGTTGCTTCTGTCTTAGT
                      ____________________________________________________________
consensus CAGAAGACAAAGTTGCAGCTTGTGGACAGCATCTTTCACAGTGGTTGCTTCTGTCTTAGT
 
. : . : . : . : . : . :
JMSF037J04+ CATTCTGGAAGGCTTCCTGAAGTTTAAAATCTGGTGGCTGCTGTTGGTTCACGTCGATGG
JMSF013B02+ CATTCTGGAAGGCTTCCTGAAGTTTAAAATCTGGTGGCTGCTGTTGGTTCACGTCGATGG
                      ____________________________________________________________
consensus CATTCTGGAAGGCTTCCTGAAGTTTAAAATCTGGTGGCTGCTGTTGGTTCACGTCGATGG
 
. : . : . : . : . : . :
JMSF037J04+ ACCTGTTGACGCTGGAGCTCGCAGGGAGAACCGGACGCTGTTGACGCTGCCGGCTGTGAC
JMSF013B02+ ACCTGTTGACGCTGGAGCTCGCAGGGAGAACCGGACGCTGTTGACGCTGCCGGCTGTGAC
                      ____________________________________________________________
consensus ACCTGTTGACGCTGGAGCTCGCAGGGAGAACCGGACGCTGTTGACGCTGCCGGCTGTGAC
 
. : . : . : . : . : . :
JMSF037J04+ AGGTGCTGACGGTGAGTGGGCTGCCGGCTGTGAAGGGGCTGGTCGTGGTCGGCGATCGCG
JMSF013B02+ AGGTGCTGACGGTGAGTGGGCTGCCGGCTGTGAAGGGGCTGGTCGTGGTCGGCGATCGCG
                      ____________________________________________________________
consensus AGGTGCTGACGGTGAGTGGGCTGCCGGCTGTGAAGGGGCTGGTCGTGGTCGGCGATCGCG
 
. : . : . : . : . : . :
JMSF037J04+ GCGGCGCCAGTGCTGATCAGGGAAAAGGGACGGTGGTGGGGCTCGGCGGTGGCGTTTGTG
JMSF013B02+ GCGGCGCCAGTGCTGATCAGGGAAAAGGGACGGTGGTGGGGCTCGGCGGTGGCGTTTGTG
                      ____________________________________________________________
consensus GCGGCGCCAGTGCTGATCAGGGAAAAGGGACGGTGGTGGGGCTCGGCGGTGGCGTTTGTG
 
. : . : . : . : . : . :
JMSF037J04+ GGCAGGCGGTGGCAGATTACGGAAAAGGGAATTAGGGCTGGGGGTTGGGGGCGGAATCCC
JMSF013B02+ GGCAGGCGGTGGCAGATTACGGAAAAGGGAATTAGGGCTGGGGGTTGGGGGCGGAATCCC
                      ____________________________________________________________
consensus GGCAGGCGGTGGCAGATTACGGAAAAGGGAATTAGGGCTGGGGGTTGGGGGCGGAATCCC