clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF031I04 | Sequence | 553 | 007414 (4) | ref|XP_008337894.1| | 6e-53 | PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica] | 798 | 012342 (5) | ref|XP_009597831.1| | 1e-103 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
JMFF036O19 | Sequence | 527 | 007414 (4) | ref|XP_008337894.1| | 6e-56 | PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica] | 668 | 012342 (5) | ref|XP_009597831.1| | 3e-98 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
JMFF039O23 | Sequence | 497 | 007414 (4) | ref|XP_008337894.1| | 1e-51 | PREDICTED: vacuolar protein sorting-associated protein 4 [Malus domestica] | 764 | 012342 (5) | ref|XP_009597831.1| | 5e-129 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
JMSF030M19 | Sequence | 649 | 007414 (4) | gb|AIN75626.1| | 6e-82 | K+ transport growth defect-like protein [Hevea brasiliensis] | 683 | 012342 (5) | ref|XP_009597831.1| | 2e-101 | PREDICTED: vacuolar protein sorting-associated protein 4-like isoform X1 [Nicot |
This contig is upended
. : . : . : . : . : . :
JMSF030M19+ CTCTAGCCCGGCAAC
____________________________________________________________
consensus CTCTAGCCCGGCAAC
. : . : . : . : . : . :
JMSF030M19+ ATCACTCCACTTGACATTAGGCTTTTCTCTAACGATCGCCGAGTTGAGCCCAGCCCGGAG
____________________________________________________________
consensus ATCACTCCACTTGACATTAGGCTTTTCTCTAACGATCGCCGAGTTGAGCCCAGCCCGGAG
. : . : . : . : . : . :
JMFF039O23+ CTGGA
JMFF036O19+ CCTTAGGCTTGGTCTTAGACCTGGA
JMSF030M19+ CTTGGACTGCTCAGGATCCTCCCCGTCCTCCCCATCCTTAGGCTTGGTCTTAGACCTGGA
JMFF031I04+ TCTTAGACCTGGA
____________________________________________________________
consensus CTTGGACTGCTCAGGATCCTCCCCGTCCTCCCCATCCTTAGGCTTGGTCTTAGACCTGGA
. : . : . : . : . : . :
JMFF039O23+ AGCCACGGCCGCATCCCCGTTGGAAGCGGGGCCGGGGCCGGTGCCGCCCTCATCAAGCAC
JMFF036O19+ AGCCACGGCCGCATCCCCGTTGGAAGCGGGGCCGGGGCCGGTGCCGCCCTCATCAAGCAC
JMSF030M19+ AGCCACGGCCGCATCCCCGTTGGAAGCGGGGCCGGGGCCGGTGCCGCCCTCATCAAGCAC
JMFF031I04+ AGCCACGGCCGCATCCCCGTTGGAAGCGGGGCCGGGGCCGGTGCCGCCCTCATCAAGCAC
____________________________________________________________
consensus AGCCACGGCCGCATCCCCGTTGGAAGCGGGGCCGGGGCCGGTGCCGCCCTCATCAAGCAC
. : . : . : . : . : . :
JMFF039O23+ AGCTCGGATCTCCTCCGCACGGCGCAAGTACTCCGTGAACTTGTGGGTGATGGCCTCCTT
JMFF036O19+ AGCTCGGATCTCCTCCGCACGGCGCAAGTACTCCGTGAACTTGTGGGTGATGGCCTCCTT
JMSF030M19+ AGCTCGGATCTCCTCCGCACGGCGCAAGTACTCCGTGAACTTGTGGGTGATGGCCTCCTT
JMFF031I04+ AGCTCGGATCTCCTCCGCACGGCGCAAGTACTCCGTGAACTTGTGGGTGATGGCCTCCTT
____________________________________________________________
consensus AGCTCGGATCTCCTCCGCACGGCGCAAGTACTCCGTGAACTTGTGGGTGATGGCCTCCTT
. : . : . : . : . : . :
JMFF039O23+ GATCTTGGGGTTCTTCTCGTACTTGAGGTGAGTCTTGAAGTATTCCAAGGCGTTCATGTA
JMFF036O19+ GATCTTGGGGTTCTTCTCGTACTTGAGGTGAGTCTTGAAGTATTCCAAGGCGTTCATGTA
JMSF030M19+ GATCTTGGGGTTCTTCTCGTACTTGAGGTGAGTCTTGAAGTATTCCAAGGCGTTCATGTA
JMFF031I04+ GATCTTGGGGTTCTTCTCGTACTTGAGGTGAGTCTTGAAGTATTCCAAGGCGTTCATGTA
____________________________________________________________
consensus GATCTTGGGGTTCTTCTCGTACTTGAGGTGAGTCTTGAAGTATTCCAAGGCGTTCATGTA
. : . : . : . : . : . :
JMFF039O23+ CAGCGGGAACGCCTTGGCGTAGTTCCCCGCATTGTCCTCCTGCACCGCTTGCCGCACATA
JMFF036O19+ CAGCGGGAACGCCTTGGCGTAGTTCCCCGCATTGTCCTCCTGCACCGCTTGCCGCACATA
JMSF030M19+ CAGCGGGAACGCCTTGGCGTAGTTCCCCGCATTGTCCTCCTGCACCGCTTGCCGCACATA
JMFF031I04+ CAGCGGGAACGCCTTGGCGTAGTTCCCCGCATTGTCCTCCTGCACCGCTTGCCGCACATA
____________________________________________________________
consensus CAGCGGGAACGCCTTGGCGTAGTTCCCCGCATTGTCCTCCTGCACCGCTTGCCGCACATA
. : . : . : . : . : . :
JMFF039O23+ CTCGATCGCCTGCTCTTTGAAATTGCTATACATCCTCCTCGATCATGCGTGTGTAAGTAA
JMFF036O19+ CTCGATCGCCTGCTCTTTGAAATTGCTATACATCCTCCTCGATCATGCGTGTGTAAGTAA
JMSF030M19+ CTCGATCGCCTGCTCTTTGAAATTGCTATACATCCTCCTCGATCATGCGTGTGTAAGTAA
JMFF031I04+ CTCGATCGCCTGCTCTTTGAAATTGCTATACATCCTCCTCGATCATGCGTGTGTAAGTAA
____________________________________________________________
consensus CTCGATCGCCTGCTCTTTGAAATTGCTATACATCCTCCTCGATCATGCGTGTGTAAGTAA
. : . : . : . : . : . :
JMFF039O23+ ACACACAGAGACGAAGTGAGGAACCCTAGAAACTGGTGGATTGTTTGTTTAATCGATGGA
JMFF036O19+ ACACACAGAGACGAAGTGAGGAACCCTAGAAACTGGTGGATTGTTTGTTTAATCGATGGA
JMSF030M19+ ACACACAGAGACGAAGTGAGGAACCCTAGAAACTGGTGGATTGTTTGTTTAATCGATGGA
JMFF031I04+ ACACACAGAGACGAAGTGAGGAACCCTAGAAACTGGTGGATTGTTTGTTTAATCGATGGA
____________________________________________________________
consensus ACACACAGAGACGAAGTGAGGAACCCTAGAAACTGGTGGATTGTTTGTTTAATCGATGGA
. : . : . : . : . : . :
JMFF039O23+ TATCAGTAACAAATTTGAAATTCTTGGAACCCTAGAAATGAGGGGCTTTAGATTTAGGAA
JMFF036O19+ TATCAGTAACAAATTTGAAATTCTTGGAACCCTAGAAATGAGGGGCTTTAGATTTAGGAA
JMSF030M19+ TATCAGTAACAAATTTGAAATTCTTGGAACCCTAGAAATGACGGGCTTTAGATTTAGGAA
JMFF031I04+ TATCAGTAACAAATTTGAAATTCTTGGAACCCTAGAAATGAGGGGCTTTAGATTTAGGAA
____________________________________________________________
consensus TATCAGTAACAAATTTGAAATTCTTGGAACCCTAGAAATGAGGGGCTTTAGATTTAGGAA
. : . : . : . : . : . :
JMFF039O23+ ATGAAATAATTTCGGATAACTAAAAATAATAATCAGAGTTTGAATTTGAATCATCAAAGT
JMFF036O19+ ATGAAATAATTTCGGATAACTAAAAATAATAATCAGAGTTTGAATTTGAATCATCAAAGT
JMSF030M19+ ATGAAATAATTTCGGATAACTAAAAATAATAATCAGAGTTTGAATTTGAATCATCAAAGT
JMFF031I04+ ATGAAATAATTTCGGATAACTAAAAATAATAATCAGAGTTTGAATTTGAATCATCAAAGT
____________________________________________________________
consensus ATGAAATAATTTCGGATAACTAAAAATAATAATCAGAGTTTGAATTTGAATCATCAAAGT
. : . : . : . : . : . :
JMFF039O23+ ATGCTGAT
JMFF036O19+ ATGCTGAT
JMSF030M19+ ATGCTGATTGCTGATTCCATAGTTGTTAAGAAT
JMFF031I04+ ATGCTGATTGCTGATTCCATAGTTGTTAAGAATGGTCTGCTCTAAACCAAGGTGCCCCCT
____________________________________________________________
consensus ATGCTGATTGCTGATTCCATAGTTGTTAAGAATGGTCTGCTCTAAACCAAGGTGCCCCCT