Contig 007362:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016C24Sequence556007362 (8)ref|XP_009795696.1|1e-35PREDICTED: polyadenylate-binding protein RBP45 [Nicotiana sylvestris]778002664 (10)ref|XP_006346222.1|1e-67PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF016N14Sequence556007362 (8)gb|EYU33637.1|3e-26hypothetical protein MIMGU_mgv1a007175mg [Erythranthe guttata]659002664 (10)ref|XP_006346222.1|4e-39PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF020P12Sequence482007362 (8)sp|Q9LEB4.1|RBP45_NICPL2e-20RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei757002664 (10)ref|XP_006346222.1|2e-59PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF022F11Sequence512007362 (8)sp|Q9LEB4.1|RBP45_NICPL1e-27RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei697002664 (10)ref|XP_006346222.1|1e-42PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF025F08Sequence554007362 (8)sp|Q9LEB4.1|RBP45_NICPL6e-37RecName: Full=Polyadenylate-binding protein RBP45; Short=Poly(A)-binding protei708002664 (10)ref|XP_006346222.1|2e-60PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF041O11Sequence662007362 (8)ref|XP_006346222.1|1e-57PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]551002664 (10)ref|XP_006346222.1|4e-18PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]
JMFF044C11Sequence646007362 (8)ref|XP_006346222.1|1e-56PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]312002664 (10)
JMSF015A07Sequence396007362 (8)ref|XP_009795696.1|8e-05PREDICTED: polyadenylate-binding protein RBP45 [Nicotiana sylvestris]798002664 (10)ref|XP_006346222.1|9e-88PREDICTED: polyadenylate-binding protein RBP45-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFF041O11+ GTAGTA
                      ____________________________________________________________
consensus GTAGTA
 
. : . : . : . : . : . :
JMFF044C11+ CATCAGCAGCCAAATCTCCAACAAAAATGGTGTAGTCCGGAGTATCATCCCG
JMFF041O11+ ATCATTCACATCAGCAGCCAAATCTCCAACAANAATGGTGTAGTCCGGAGTATCATCCCG
                      ____________________________________________________________
consensus ATCATTCACATCAGCAGCCAAATCTCCAACAAAAATGGTGTAGTCCGGAGTATCATCCCG
 
. : . : . : . : . : . :
JMFF016N14+ TGCTCAGAATTTGGCAT
JMFF044C11+ CTTCTCACCAGCTCCAAGTGTTGCCCAATTCAACCTAAAATTCTGCTCAGAATTTGGCAT
JMFF025F08+ TTCTGCTCAGAATTTGGCAT
JMFF041O11+ CTTCTCACCAGCTCCAAGTGTTGCCCAATTCAACCTAAAATTCTGCTCAGAATTTGGCAT
JMFF016C24+ TTCTGCTCAGAATTTGGCAT
                      ____________________________________________________________
consensus CTTCTCACCAGCTCCAAGTGTTGCCCAATTCAACCTAAAATTCTGCTCAGAATTTGGCAT
 
. : . : . : . : . : . :
JMFF016N14+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF044C11+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF025F08+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF041O11+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF022F11+ TATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF016C24+ AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
JMFF020P12+ GAC
                      ____________________________________________________________
consensus AGCTGTCCCATTATATGTTTGTAATATATTCTCAGCAGCTGCATGACTCCTGAACTCGAC
 
. : . : . : . : . : . :
JMFF016N14+ AAAACCATACCCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF044C11+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF025F08+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF041O11+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF022F11+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
JMFF016C24+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCCTGTTACGGATGACCTTTGAGGAAGTAA
JMFF020P12+ AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
                      ____________________________________________________________
consensus AAAACCATA-CCCCTCGGATTGACCAGTTAGCTTGTTACGGATGACCTTTGAGGAAGTAA
 
. : . : . : . : . : . :
JMFF016N14+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF044C11+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF025F08+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF041O11+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF022F11+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMSF015A07+ ACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF016C24+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
JMFF020P12+ GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
                      ____________________________________________________________
consensus GCTCTCCAGTATGAGCAAAACAGGTATTAATATAATTCTCATCCATCCAGTACTGTAAAT
 
. : . : . : . : . : . :
JMFF016N14+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF044C11+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF025F08+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF041O11+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF022F11+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMSF015A07+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF016C24+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
JMFF020P12+ CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
                      ____________________________________________________________
consensus CCCCAATCCACAGAGACTTAACCTCGCTGGGACTCGAGGAAGAGGCGGCGGTCGTGCCGG
 
. : . : . : . : . : . :
JMFF016N14+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF044C11+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF025F08+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF041O11+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF022F11+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMSF015A07+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF016C24+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
JMFF020P12+ AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
                      ____________________________________________________________
consensus AGGGGAGAGAAGCGTACTGTTGCGTCTGCTGAGGATGAGGCATAGCATGCTGCGCCATTG
 
. : . : . : . : . : . :
JMFF016N14+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF044C11+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF025F08+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF041O11+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF022F11+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMSF015A07+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF016C24+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
JMFF020P12+ GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
                      ____________________________________________________________
consensus GCGGTGGCTGCTGGTGCCAGACGGTGGGAGGCTGCGGTTGCGGTGGCGGCACAGACATCC
 
. : . : . : . : . : . :
JMFF016N14+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF044C11+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF025F08+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF041O11+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF022F11+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMSF015A07+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF016C24+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
JMFF020P12+ ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
                      ____________________________________________________________
consensus ACTGCTGAGGTGGCTGCTGATACTGTGGCGGCTGCTGAGCCGGATTCGTCGGCATCGGAG
 
. : . : . : . : . : . :
JMFF016N14+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF044C11+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF025F08+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF041O11+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF022F11+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMSF015A07+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF016C24+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
JMFF020P12+ CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
                      ____________________________________________________________
consensus CCATCGGCGGTGGGACCACTCCGCTCGGCTGCATGCTCGAACTAAGAACCCTAGATTACG
 
. : . : . : . : . : . :
JMFF016N14+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGA
JMFF044C11+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGAC
JMFF025F08+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMFF041O11+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMFF022F11+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMSF015A07+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMFF016C24+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAAC
JMFF020P12+ AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAACGACAAC
                      ____________________________________________________________
consensus AAAGAGGTGCACAGGGAGATGAAACCAATTCGATTGCGGGTTCGCGAGACGAACGACAAC