Contig 007116:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF021M24Sequence528000757 (5)ref|XP_009616503.1|3e-88PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]690007116 (5)gb|KHG09712.1|1e-89Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMFF042P16Sequence652000757 (5)ref|XP_009616503.1|3e-112PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]658007116 (5)gb|KHG09712.1|4e-57Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF016C10Sequence228000757 (5)emb|CDO99385.1|7e-17unnamed protein product [Coffea canephora]727007116 (5)gb|KHG09712.1|9e-94Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF023M09Sequence639000757 (5)ref|XP_009616503.1|2e-115PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]791007116 (5)gb|KHG09712.1|2e-90Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]
JMSF025A15Sequence678000757 (5)ref|XP_009616503.1|1e-99PREDICTED: chaperonin CPN60-2, mitochondrial [Nicotiana tomentosiformis]768007116 (5)gb|KHG09712.1|7e-102Chaperonin CPN60-2, mitochondrial [Gossypium arboreum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF016C10+ GGAGGGGCCAGT
rJMSF025A15+ AAAGACTAGCTAAGCTCTCTGGTGGAGTGGCTGTATTAAAGATTGGAGGGGCCAGT
rJMFF021M24+ T
rJMSF023M09+ CCAGT
                      ____________________________________________________________
consensus AAAGACTAGCTAAGCTCTCTGGTGGAGTGGCTGTATTAAAGATTGGAGGGGCCAGT
 
. : . : . : . : . : . :
rJMSF016C10+ GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
rJMSF025A15+ GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
rJMFF021M24+ GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
rJMSF023M09+ GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
                      ____________________________________________________________
consensus GAAGCTGAGGTTGGTGAGAAGAAAGATAGAGTCACTGATGCACTAAATGCCACCAAAGCA
 
. : . : . : . : . : . :
rJMSF016C10+ GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
rJMSF025A15+ GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
rJMFF021M24+ GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
rJMSF023M09+ GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
                      ____________________________________________________________
consensus GCTGTTGAGGAAGGAATTGTACCTGGTGGCGGTGTTGCTCTTCTCTATGCCTCAAAAGAA
 
. : . : . : . : . : . :
rJMSF016C10+ TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
rJMSF025A15+ TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
rJMFF021M24+ TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
rJMFF042P16+ TGGAGAAGCTCCCANCAGCTAACTTGATTCAGAAGATTGGTGTTCAAATTATTCAGAAT
rJMSF023M09+ TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
                      ____________________________________________________________
consensus TTGGAGAAGCTCCCAACAGCTAACTTTGATCAGAAGATTGGTGTTCAAATTATTCAGAAT
 
. : . : . : . : . : . :
rJMSF016C10+ GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
rJMSF025A15+ GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
rJMFF021M24+ GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
rJMFF042P16+ GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
rJMSF023M09+ GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
                      ____________________________________________________________
consensus GCCCTGAAGACGCCAGTGCACACAATAGCCTCTAATGCTGGAGTAGAGGGAGCTGTTGTC
 
. : . : . : . : . : . :
rJMSF016C10+ GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
rJMSF025A15+ GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
rJMFF021M24+ GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
rJMFF042P16+ GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
rJMSF023M09+ GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
                      ____________________________________________________________
consensus GTTGGTAAACTGCTTGAGCAAGATAACGCTGATCTTGGATATGATGCGGCGAAAGGTGAG
 
. : . : . : . : . : . :
rJMSF016C10+ TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
rJMSF025A15+ TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
rJMFF021M24+ TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
rJMFF042P16+ TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
rJMSF023M09+ TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
                      ____________________________________________________________
consensus TATGTTGATATGGTTAAGGCAGGTATTATTGATCCGGTGAAAGTCATAAGAACAGCCTTG
 
. : . : . : . : . : . :
rJMSF016C10+ GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
rJMSF025A15+ GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
rJMFF021M24+ GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
rJMFF042P16+ GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
rJMSF023M09+ GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
                      ____________________________________________________________
consensus GTTGATGCTGCTAGTGTATCTTCTCTCTTGACGACAACGGAGGCAGTGGTCGTTGAGCTT
 
. : . : . : . : . : . :
rJMSF016C10+ CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
rJMSF025A15+ CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
rJMFF021M24+ CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
rJMFF042P16+ CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
rJMSF023M09+ CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
                      ____________________________________________________________
consensus CCAAAGGACGAGAAGGAAACTCCAGCTGGTATGGGCGGTGGCATGGGCGGAATGGGTGGT
 
. : . : . : . : . : . :
rJMSF016C10+ ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
rJMSF025A15+ ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
rJMFF021M24+ ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
rJMFF042P16+ ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
rJMSF023M09+ ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
                      ____________________________________________________________
consensus ATGGACTATTGATAGGATCCATAATCCCCACCTAGTCATCTGCCTAAACACACAATTCTT
 
. : . : . : . : . : . :
rJMSF016C10+ TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
rJMSF025A15+ TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
rJMFF021M24+ TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
rJMFF042P16+ TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
rJMSF023M09+ TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
                      ____________________________________________________________
consensus TAACTCTCACAAATAAAAGAATCTAGGGTTCATCCCATTTTGGCAAAGACTAGAGGTGTT
 
. : . : . : . : . : . :
rJMSF016C10+ CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
rJMSF025A15+ CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
rJMFF021M24+ CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
rJMFF042P16+ CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
rJMSF023M09+ CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
                      ____________________________________________________________
consensus CCTGTAATCTAGTAACATATTATCCAAACCAGACTTGATGGTTTTCCATGATGAGGAAAT
 
. : . : . : . : . : . :
rJMSF016C10+ TGTAATTTTTGTCC
rJMSF025A15+ TGTAATTTTTGTCCTTGACGGCTCGGATTCTAATTATTCTTGT
rJMFF021M24+ TGTAATTTTTGTCCTTGACGGCTCGGATT
rJMFF042P16+ TGTAATTTTTGTCCTTGACGGCTCGGATTCTAATTATTCTTGTTAACAAAGCCTTTTCTC
rJMSF023M09+ TGTAATTTTTGTCCTTGACGGCTCGGATTCTAATTATTCTTGTTAACAAAGCCTTTTCTC
                      ____________________________________________________________
consensus TGTAATTTTTGTCCTTGACGGCTCGGATTCTAATTATTCTTGTTAACAAAGCCTTTTCTC
 
. : . : . : . : . : . :
rJMFF042P16+ CCATTGAACTCAA
rJMSF023M09+ CCATTGAACTCAATTCAAGAATATAGTTTCTAATTATTCTTGTAACAAAGCCTTTCTCCC
                      ____________________________________________________________
consensus CCATTGAACTCAATTCAAGAATATAGTTTCTAATTATTCTTGTAACAAAGCCTTTCTCCC