Contig 007065:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF012P01Sequence412008032 (6)762007065 (3)ref|XP_009613357.1|1e-42PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis
JMSF021P19Sequence650008032 (6)ref|XP_009613357.1|2e-22PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis740007065 (3)ref|XP_009779024.1|1e-80PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana sylvestris]
JMSF043E16Sequence764008032 (6)ref|XP_009613357.1|2e-25PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana tomentosiformis744007065 (3)ref|XP_009779024.1|1e-36PREDICTED: CCR4-NOT transcription complex subunit 10 [Nicotiana sylvestris]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF021P19+ TCCATTCCAGATTAT
                      ____________________________________________________________
consensus TCCATTCCAGATTAT
 
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rJMSF021P19+ GAAGATATTTGTAGAAAAGAAAATCAGATGCTTGAGCAAGCCCTTTTGGCAGATCTGGCT
                      ____________________________________________________________
consensus GAAGATATTTGTAGAAAAGAAAATCAGATGCTTGAGCAAGCCCTTTTGGCAGATCTGGCT
 
. : . : . : . : . : . :
rJMSF021P19+ TATGTAGAGCTTGAACTGGGGGATCCATTGAGGGCTCTATCAACAGCAAGATCTCTATTG
                      ____________________________________________________________
consensus TATGTAGAGCTTGAACTGGGGGATCCATTGAGGGCTCTATCAACAGCAAGATCTCTATTG
 
. : . : . : . : . : . :
rJMSF021P19+ AAACTCATTGAATGTTCCAAGATATATACCTTCTTGGGTAATGTCTATGCAGCTGAGGCT
                      ____________________________________________________________
consensus AAACTCATTGAATGTTCCAAGATATATACCTTCTTGGGTAATGTCTATGCAGCTGAGGCT
 
. : . : . : . : . : . :
rJMSF021P19+ CTATGCTTGCTTAGCCGGCCAAAGGAGGCTGCGGAACATTTGTCAATGTATCTTTCTGAG
rJMSF012P01+ CCAAAGGAGGCTGCGGAACATTTGTCAATGTATCTTTCTGAG
                      ____________________________________________________________
consensus CTATGCTTGCTTAGCCGGCCAAAGGAGGCTGCGGAACATTTGTCAATGTATCTTTCTGAG
 
. : . : . : . : . : . :
rJMSF021P19+ ATTAAGGGTGTTGAACAGCCATTTAGTCAGGAGGATGTGGAAGCATGGAGAGTGGAGAAG
rJMSF043E16+ GGGTGTTGAACAGCCATTTAGTCAGGAGGATGTGGAAGCATGGAGAGTGGAGAAG
rJMSF012P01+ ATTAAGGGTGTTGAACAGCCATTTAGTCAGGAGGATGTGGAAGCATGGAGAGTGGAGAAG
                      ____________________________________________________________
consensus ATTAAGGGTGTTGAACAGCCATTTAGTCAGGAGGATGTGGAAGCATGGAGAGTGGAGAAG
 
. : . : . : . : . : . :
rJMSF021P19+ GTAGTGGATTCAGAGGAGTCAAATGGTGGCTCAACAACTATGAACGAATCTCAAGGTTTT
rJMSF043E16+ GTAGTGGATTCAGAGGAGTCAAATGGTGGCTCAACAACTATGAACGAATCTCAAGGTTTT
rJMSF012P01+ GTAGTGGATTCAGAGGAGTCAAATGGTGGCTCAACAACTATGAACGAATCTCAAGGTTTT
                      ____________________________________________________________
consensus GTAGTGGATTCAGAGGAGTCAAATGGTGGCTCAACAACTATGAACGAATCTCAAGGTTTT
 
. : . : . : . : . : . :
rJMSF021P19+ GTGTTCCTTAAACCAGAAGAGGCTCGAGGTATTCTGTTTACCAACTTGGCTGCCATGTCT
rJMSF043E16+ GTGTTCCTTAAACCAGAAGAGGCTCGAGGTATTCTGTTTACCAACTTGGCTGCCATGTCT
rJMSF012P01+ GTGTTCCTTAAACCAGAAGAGGCTCGAGGTATTCTGTTTACCAACTTGGCTGCCATGTCT
                      ____________________________________________________________
consensus GTGTTCCTTAAACCAGAAGAGGCTCGAGGTATTCTGTTTACCAACTTGGCTGCCATGTCT
 
. : . : . : . : . : . :
rJMSF021P19+ GCAGTTCAGGGGGATCTTGACCAGGCGCATGCATATGCACTAGCAGCAGCGGCAATCATA
rJMSF043E16+ GCAGTTCAGGGGGATCTTGACCAGGCGCATGCATATGCACTAGCAGCAGCGGCAATCATA
rJMSF012P01+ GCAGTTCAGGGGGATCTTGACCAGGCGCATGCATATGCACTAGCAGCAGCGGCAATCATA
                      ____________________________________________________________
consensus GCAGTTCAGGGGGATCTTGACCAGGCGCATGCATATGCACTAGCAGCAGCGGCAATCATA
 
. : . : . : . : . : . :
rJMSF021P19+ CCCAGGAGTACCAAAGCTATACTCACTGCAATTTATGTTGACCTTTTGCAAGGGAAGACA
rJMSF043E16+ CCCAGGAGTACCAAAGCTATACTCACTGCAATTTATGTTGACCTTTTGCAAGGGAAGACA
rJMSF012P01+ CCCAGGAGTACCAAAGCTATACTCACTGCAATTTATGTTGACCTTTTGCAAGGGAAGACA
                      ____________________________________________________________
consensus CCCAGGAGTACCAAAGCTATACTCACTGCAATTTATGTTGACCTTTTGCAAGGGAAGACA
 
. : . : . : . : . : . :
rJMSF021P19+ AAAGAAGCTGTTGCCAAGTTAAGAAAATGTAGTTCTGTTAGATTCATTCACAACAGCCTA
rJMSF043E16+ AAAGAAGCTGTTGCCAAGTTAAGAAAATGTAGTTCTGTTAGATTCATTCACAACAGCCTA
rJMSF012P01+ AAAGAAGCTGTTGCCAAGTTAAGAAAATGTAGTTCTGTTAGATTCATTCACAACAGCCTA
                      ____________________________________________________________
consensus AAAGAAGCTGTTGCCAAGTTAAGAAAATGTAGTTCTGTTAGATTCATTCACAACAGCCTA
 
. : . : . : . : . : . :
rJMSF021P19+ CCCACAAATGGTTCTTTATGATGATGATGATTGTATTGGTAGTTTTCACTGGTTGTGTCA
rJMSF043E16+ CCCACAAATGGTTCTTTATGATGATGATGATTGTATTGGTAGTTTTCACTGGTTGTGTCA
rJMSF012P01+ CCCACAAATGGTTCTTTATGATGATGATGATTGTATTGGTAGTTTTCACTGGTTGTGTCA
                      ____________________________________________________________
consensus CCCACAAATGGTTCTTTATGATGATGATGATTGTATTGGTAGTTTTCACTGGTTGTGTCA
 
. : . : . : . : . : . :
rJMSF021P19+ AGCCCACCCTTCTTCACATCAGGTTAGAAGGTAGTCTGACAATCCCTATATAGGTGATTT
rJMSF043E16+ AGCCCACCCTTCTTCACATCAGGTTAGAAGGTAGTCTGACAATCCCTATATAGGTGATTT
rJMSF012P01+ AGCCCACCCTTCTTCACATCAGGTTAGAAGGTAGTCTGACAATCCCTATATAGGTGATTT
                      ____________________________________________________________
consensus AGCCCACCCTTCTTCACATCAGGTTAGAAGGTAGTCTGACAATCCCTATATAGGTGATTT
 
. : . : . : . : . : . :
rJMSF021P19+ GTACC
rJMSF043E16+ GTACCATATATAGTTCATCCCAGGAATAAGTTTTCATTTGTAACTTTTCAATTTTACATA
rJMSF012P01+ GTACCATATATAGTTCATCCCAGGAATAAGTTTTCATTTGTAACTTTTCAATTTTACATA
                      ____________________________________________________________
consensus GTACCATATATAGTTCATCCCAGGAATAAGTTTTCATTTGTAACTTTTCAATTTTACATA
 
. : . : . : . : . : . :
rJMSF043E16+ TTCAGTTGTAGGTTTATTTTGGTTGGGGGGTGAGGGGGGGAGTGGGTGCAGAGATTATTT
rJMSF012P01+ TTCAGTTGTAGGTTTATTTTGGTTGGGGGGTGAGGGGGGGAGTGGGTGCAGAGATTATTT
                      ____________________________________________________________
consensus TTCAGTTGTAGGTTTATTTTGGTTGGGGGGTGAGGGGGGGAGTGGGTGCAGAGATTATTT
 
. : . : . : . : . : . :
rJMSF043E16+ TGGCTGTTGCAGATGCCACCACCTATAAGAGATTTGAGATCTGTAATTTTTGTTTTAGAG
rJMSF012P01+ TGGCTGTTGCAGATGCCACCACCTATAAGAGATTTGAGATCTGTAGTTTTTGTTTTAGAG
                      ____________________________________________________________
consensus TGGCTGTTGCAGATGCCACCACCTATAAGAGATTTGAGATCTGTAGTTTTTGTTTTAGAG
 
. : . : . : . : . : . :
rJMSF043E16+ AGCTGTGTTTTCTAGAGTCTAATTTTAGCTTCCCGTTCCAACCTTCCAAAGGTATAGAGT
rJMSF012P01+ AGCTGTGTTTTCTAGAGTCTAATTTTAGCTTCCCGTTCCAACCTTCCAAAGGTATAGAGT
                      ____________________________________________________________
consensus AGCTGTGTTTTCTAGAGTCTAATTTTAGCTTCCCGTTCCAACCTTCCAAAGGTATAGAGT