| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFS093G09 | Sequence | 500 | 006404 (6) | ref|XP_009792144.1| | 4e-33 | PREDICTED: porphobilinogen deaminase, chloroplastic-like [Nicotiana sylvestris] | |||||
| JMSF006M02 | Sequence | 387 | 006404 (6) | ref|XP_008361909.1| | 2e-26 | PREDICTED: porphobilinogen deaminase, chloroplastic-like [Malus domestica] | |||||
| JMSF006M04 | Sequence | 315 | 010575 (2) | 329 | 006404 (6) | ref|XP_009792144.1| | 3e-33 | PREDICTED: porphobilinogen deaminase, chloroplastic-like [Nicotiana sylvestris] | |||
| JMSF008J12 | Sequence | 361 | 006404 (6) | ref|XP_008361909.1| | 8e-19 | PREDICTED: porphobilinogen deaminase, chloroplastic-like [Malus domestica] | 736 | 006404 (6) | ref|XP_009792144.1| | 2e-127 | PREDICTED: porphobilinogen deaminase, chloroplastic-like [Nicotiana sylvestris] |
| JMSF024L01 | Sequence | 656 | 006404 (6) | emb|CDP13602.1| | 4e-83 | unnamed protein product [Coffea canephora] | 690 | 011108 (2) | gb|ABK93253.1| | 1e-69 | unknown [Populus trichocarpa] |
This contig is upended
. : . : . : . : . : . :
JMFS093G09+ AGCAATTAAAGTAACTGATCAGATAGATCACAACCATTGG
____________________________________________________________
consensus AGCAATTAAAGTAACTGATCAGATAGATCACAACCATTGG
. : . : . : . : . : . :
JMFS093G09+ AGATTGTTTTAGCAAGCATCAGCATCTACAATTCTGGAAAATTGTTGAGCAACAAAGAAG
____________________________________________________________
consensus AGATTGTTTTAGCAAGCATCAGCATCTACAATTCTGGAAAATTGTTGAGCAACAAAGAAG
. : . : . : . : . : . :
JMFS093G09+ TAGCAACTTAATCTAACCAAGTGGAATAAAGAATAATGGGATGTTACAAAAATCTCATTC
____________________________________________________________
consensus TAGCAACTTAATCTAACCAAGTGGAATAAAGAATAATGGGATGTTACAAAAATCTCATTC
. : . : . : . : . : . :
JMFS093G09+ AGTTTAATCTCACACCATAACAATTACAACAACCATAAAGAGCCTCTCATAAACCTCTAC
rJMSF006M04- CAACAACCATAAAGAGGCTCTCATAAACCTCTAC
rJMSF008J12- ACAACCATAAAGAGCCTCTCATAAACCTCTAC
____________________________________________________________
consensus AGTTTAATCTCACACCATAACAATTACAACAACCATAAAGAGCCTCTCATAAACCTCTAC
. : . : . : . : . : . :
JMFS093G09+ CAACTATCACTGGTACACAAACCACAACCTCTCTCCAACTCATTAGATGTTAGGAGCCGA
rJMSF006M04- CAACTATCACTGGTACACANACCACAACCTCTCTCCGACTCATTAGATGTTGTGAGCCGA
rJMSF008J12- CAACTATCACTGGTACACAAACCACAACCTCTCTCCAACTCATTAGATGTTAGGAGCCGA
____________________________________________________________
consensus CAACTATCACTGGTACACAAACCACAACCTCTCTCCAACTCATTAGATGTTAGGAGCCGA
. : . : . : . : . : . :
JMFS093G09+ TTTGTAGAATGATTTAGTTACCAAAAAAGCCCGGCCCAGCTTGCAACAGGAGCTCCTTGC
rJMSF006M04- TTTGTAGAATGATTNAGTTACCAAAAAAGCCCGGCCCAGCTTGCAACAGGAGCTCCTTGC
rJMSF008J12- TTTGTAGAATGATTTAGTTACCAAAAAAGCCCGGCCCAGCTTGCAACAGGAGCTCCTTGC
____________________________________________________________
consensus TTTGTAGAATGATTTAGTTACCAAAAAAGCCCGGCCCAGCTTGCAACAGGAGCTCCTTGC
. : . : . : . : . : . :
JMFS093G09+ CAGCATCCTCGCCCATCAGAACCATGTCGTTCAATGTGTACGGGCCTTTTCTTGAGGTTT
rJMSF006M04- CAGNATCCTCGCCCATCAGAACNATGTCGTTCAATGTGTACGGGCCTTTTCTTGAGGTTT
rJMSF008J12- CAGCATCCTCGCCCATCAGAACCATGTCGTTCAATGTGTACGGGCCTTTTCTTGAGGTTT
____________________________________________________________
consensus CAGCATCCTCGCCCATCAGAACCATGTCGTTCAATGTGTACGGGCCTTTTCTTGAGGTTT
. : . : . : . : . : . :
JMFS093G09+ CAATGACTCGGGTTCCATCCGGGGAGGCCACCAAACCCTTGAAAATGCAGTCTCCATCCT
rJMSF006M04- CAATGACTCGGGTTCCATCCGGGGAGGCCNCCAAACCCTTGAAAATGCAGTCTCCATCCT
rJMSF008J12- CAATGACTCGGGTTCCATCCGGGGAGGCCACCAAACCCTTGAAAATGCAGTCTCCATCCT
____________________________________________________________
consensus CAATGACTCGGGTTCCATCCGGGGAGGCCACCAAACCCTTGAAAATGCAGTCTCCATCCT
. : . : . : . : . : . :
JMFS093G09+ CCCCACGACGGGCGTACCCAGCAATTGGAGTTCGACAAGA
rJMSF006M04- CCCCACGACGGGCGTACCCAGCAATTGGAGTTCGACAAGA
rJMSF008J12- CCCCACGACGGGCGTACCCAGCAATTGGAGTTCGACAAGAGCCATCTAAGGTCGTCAGAA
____________________________________________________________
consensus CCCCACGACGGGCGTACCCAGCAATTGGAGTTCGACAAGAGCCATCTAAGGTCGTCAGAA
. : . : . : . : . : . :
rJMSF008J12- ATGCCCTCTCACAAACAACTGCTAGTCTGGTTTCCTCGTGATTCAATGAGGCAATGTAAT
____________________________________________________________
consensus ATGCCCTCTCACAAACAACTGCTAGTCTGGTTTCCTCGTGATTCAATGAGGCAATGTAAT
. : . : . : . : . : . :
rJMSF008J12- TGGCCATTTTCTCATCGTCACTTCTACAGGCAATTCCTATTGCTCCCTGAGCAACAGCTG
____________________________________________________________
consensus TGGCCATTTTCTCATCGTCACTTCTACAGGCAATTCCTATTGCTCCCTGAGCAACAGCTG
. : . : . : . : . : . :
rJMSF008J12- GGAGCATGTCCTCTATAGGAAGAATGGAAGTAACGTTCTCAGTCATATCGAGGCGTTTCA
____________________________________________________________
consensus GGAGCATGTCCTCTATAGGAAGAATGGAAGTAACGTTCTCAGTCATATCGAGGCGTTTCA
. : . : . : . : . : . :
rJMSF008J12- GCCCTGCTAACGCCAATAACGTTGCCTGAACTACCCCCTCGTTCAGTTTCCTCAGCCTCG
____________________________________________________________
consensus GCCCTGCTAACGCCAATAACGTTGCCTGAACTACCCCCTCGTTCAGTTTCCTCAGCCTCG
. : . : . : . : . : . :
rJMSF008J12- TCTGAACATTGCCTCTGAAGTTCTCAAGCACCTTGAGTGAGGGATAGCGGTGAAGTATCT
JMSF024L01+ CTGAACATTGCCTCTGAAGTTCTCAAGCACCTTGAGTGAGGGATAGCGGTGAAGTATCT
____________________________________________________________
consensus TCTGAACATTGCCTCTGAAGTTCTCAAGCACCTTGAGTGAGGGATAGCGGTGAAGTATCT
. : . : . : . : . : . :
rJMSF008J12- GTGACTTCCTCCTTAACGAAGCAGTTCCAACAGTGCTTCCTGCTGGGAGATCTGCCAGCG
JMSF024L01+ GTGACTTCCTCCTTAACGAAGCAGTTCCAACAGTGCTTCCTGCTGGGAGATCTGCCAGCG
____________________________________________________________
consensus GTGACTTCCTCCTTAACGAAGCAGTTCCAACAGTGCTTCCTGCTGGGAGATCTGCCAGCG
. : . : . : . : . : . :
rJMSF008J12- AAGCTGCACTCAGAGAAATAAACGCATCCCGAACATCCTCACGA
JMSF024L01+ AAGCTGCACTCAGAGAAATAAACGCATCCCGAACATCCTCACGAGGAAGGTTGCAGGGTA
____________________________________________________________
consensus AAGCTGCACTCAGAGAAATAAACGCATCCCGAACATCCTCACGAGGAAGGTTGCAGGGTA
. : . : . : . : . : . :
JMSF024L01+ AAATCGTCTTGTCAGGAAGATAAGTCGGAACGTCTTTCATTGAGTGAACAGCGATATCAA
____________________________________________________________
consensus AAATCGTCTTGTCAGGAAGATAAGTCGGAACGTCTTTCATTGAGTGAACAGCGATATCAA
. : . : . : . : . : . :
JMSF024L01+ TTTCTGCATTAATAAGGGCCTCGTCTATTTCTTTTGTAAACAGGCCTTTTCCACCAATAT
JMSF006M02+ GTAAACAGGCCTTTTCCACCAATAT
JMSF008J12+ T
____________________________________________________________
consensus TTTCTGCATTAATAAGGGCCTCGTCTATTTCTTTTGTAAACAGGCCTTTTCCACCAATAT
. : . : . : . : . : . :
JMSF024L01+ CTGCAAGAGGCTGACTCAATATTTTATCACCCGTGGTTTTTATAATTATGATTTCAATGG
JMSF006M02+ CTGCAAGAGGCTGACTCAATATTTTATCACCCGTGGTTTTTATAATTATGATTTCAATGG
JMSF008J12+ CTGCAAGAGGCTGACTCAATATTTTATCACCCGTGGTTTTTATAATTATGATTTCAATGG
____________________________________________________________
consensus CTGCAAGAGGCTGACTCAATATTTTATCACCCGTGGTTTTTATAATTATGATTTCAATGG
. : . : . : . : . : . :
JMSF024L01+ CACCCTCCTCGGCCAGCTCGGGATGCGAAGCCATTAGTTTATCCCGTGTCTCATAGGCTT
JMSF006M02+ CACCCTCCTCGGCCAGCTCGGGATGCGAAGCCATTAGTTTATCCCGTGTCTCATAGGCTT
JMSF008J12+ CACCCTCCTCGGCCAGCTCGGGATGCGAAGCCATTAGTTTATCCCGTGTCTCATAGGCTT
____________________________________________________________
consensus CACCCTCCTCGGCCAGCTCGGGATGCGAAGCCATTAGTTTATCCCGTGTCTCATAGGCTT
. : . : . : . : . : . :
JMSF024L01+ GAGCAAGGGCCAGTGGACTTCCCCTGGTTCCGATTCTGATAATTGCAACCTTCGTCTTCT
JMSF006M02+ GAGCAAGGGCCAGTGGACTTCCCCTGGTTCCGATTCTGATAATTGCAACCTTCGTCTTCT
JMSF008J12+ GAGCAAGGGCCAGTGGACTTCCCCTGGTTCCGATTCTGATAATTGCAACCTTCGTCTTCT
____________________________________________________________
consensus GAGCAAGGGCCAGTGGACTTCCCCTGGTTCCGATTCTGATAATTGCAACCTTCGTCTTCT
. : . : . : . : . : . :
JMSF024L01+ GGGCCTGCTGTTCTACTGCAATCGAAGCCCTCACGACCAAGCTTTTGGTGCTTCTAATGG
JMSF006M02+ GGGCCTGCTGTTCTACTGCAATCGAAGCCCTCACGACCAAGCTTTTGGTGCTTCTAATGG
JMSF008J12+ GGGCCTGCTGTTCTACTGCAATCGAAGCCCTCACGACCAAGCTTTTGGTGCTTCTAATGG
____________________________________________________________
consensus GGGCCTGCTGTTCTACTGCAATCGAAGCCCTCACGACCAAGCTTTTGGTGCTTCTAATGG
. : . : . : . : . : . :
JMSF024L01+ GCTGATTTGGGGTTGAAGATTTGAAGCCGCACGGCAACGAACGGAAAACTGACACAGAGG
JMSF006M02+ GCTGATTTGGGGTTGAAGATTTGAAGCCGCACGGCAACGAACGGAAAACTGACACAGAGG
JMSF008J12+ GCTGATTTGGGGTTGAAGATTTGAAGCCGCACGGCAACGAACGGAAAACTGACACAGAGG
____________________________________________________________
consensus GCTGATTTGGGGTTGAAGATTTGAAGCCGCACGGCAACGAACGGAAAACTGACACAGAGG
. : . : . : . : . : . :
JMSF024L01+ GCTTTGTATTTGCCGGGAAAGCAACAACCGGATTTAGCGTAATTGCCATTTTCTCC
JMSF006M02+ GCTTTGTATTTGCCGGGAAAGCAACAACCGGATTTAGCGTAATTGCCATTTTCTCC
JMSF008J12+ GCTTTGTATTTGCCGGGAAAGCAACAACCGGATTTAGCGTAATTGCCATTTTCTCCATTC
____________________________________________________________
consensus GCTTTGTATTTGCCGGGAAAGCAACAACCGGATTTAGCGTAATTGCCATTTTCTCCATTC