Contig 005524:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF016B14Sequence564000285 (4)ref|XP_009588089.1|7e-11PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [542005524 (7)ref|XP_009591201.1|4e-55PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo
JMFF035H22Sequence536010762 (2)661005524 (7)ref|XP_009591201.1|1e-76PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo
JMFF041B17Sequence647015293ref|XP_009588089.1|1e-21PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [625005524 (7)ref|XP_009591201.1|2e-64PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo
JMFF045H23Sequence632000285 (4)ref|XP_009588089.1|2e-26PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [583005524 (7)ref|XP_009591201.1|1e-55PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo
JMFF050E08Sequence579000285 (4)ref|XP_009588089.1|4e-11PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [571005524 (7)ref|XP_009591201.1|8e-56PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Nicotiana tomentosifo
JMSF008D13Sequence358000285 (4)118005524 (7)
JMSF030I21Sequence669010762 (2)ref|XP_009588089.1|6e-18PREDICTED: LOW QUALITY PROTEIN: probable tyrosine--tRNA ligase, mitochondrial [521005524 (7)ref|XP_004242803.1|6e-51PREDICTED: probable tyrosine--tRNA ligase, mitochondrial [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF035H22+ ACCTTACAAGT
                      ____________________________________________________________
consensus ACCTTACAAGT
 
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rJMFF035H22+ TCTACCAGTACTTTTTCTCTGTTCCTGATGCTGATGTGGTGAGATTTCTCAAGATTCTTA
rJMFF041B17+ GGTGAGATTTCTCAAGATTCTTA
                      ____________________________________________________________
consensus TCTACCAGTACTTTTTCTCTGTTCCTGATGCTGATGTGGTGAGATTTCTCAAGATTCTTA
 
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rJMFF035H22+ CATTTCTCACCATTGAAGAGATTGAGGAGCTCAAAACACAAATGGGGAATCCTGGTTATG
rJMFF016B14+ AAACACAAATGGGGAATCCTGGTTATG
rJMFF041B17+ CATTTCTCACCATTGAAGAGATTGAGGAGCTCAAAACACAAATGGGGAATCCTGGTTATG
                      ____________________________________________________________
consensus CATTTCTCACCATTGAAGAGATTGAGGAGCTCAAAACACAAATGGGGAATCCTGGTTATG
 
. : . : . : . : . : . :
rJMFF035H22+ CTCCTAACACTGCACAA-CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMFF016B14+ CTCCTAACACTGCACAACCGTAGGTTGNCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMSF030I21+ CAA-CGTAGNTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMFF041B17+ CTCCTAACACTGCACAA-CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMFF050E08+ CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
rJMFF045H23+ CAA-CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
                      ____________________________________________________________
consensus CTCCTAACACTGCACAA-CGTAGGTTGGCCGAGGAGGTTACACGGTTTGTTCATGGACAA
 
. : . : . : . : . : . :
rJMFF035H22+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMFF016B14+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMSF030I21+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMFF041B17+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMFF050E08+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
rJMFF045H23+ GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
                      ____________________________________________________________
consensus GAGGGGTTGGATGAAGCCCTGAAGGCTACAGAGGCATTGAGGCCTGGCAATGCAGATACT
 
. : . : . : . : . : . :
rJMFF035H22+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
rJMFF016B14+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
rJMSF030I21+ AAGTTGGATNGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTNCCT
rJMFF041B17+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
rJMFF050E08+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
rJMFF045H23+ AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
                      ____________________________________________________________
consensus AAGTTGGATTGGAAAACCATTGAGGGAATTGCCAGTGATGTTCCGTCCTGCTCGTTGCCT
 
. : . : . : . : . : . :
rJMFF035H22+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMFF016B14+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMSF030I21+ TTTGNTCAGGTGTCGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMFF041B17+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMFF050E08+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
rJMFF045H23+ TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
                      ____________________________________________________________
consensus TTTGATCAGGTGTTGAGTATTTCGGTTTTGGATCTTTCTGTTTCTAGTGGTTTGCTCGAG
 
. : . : . : . : . : . :
rJMFF035H22+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMFF016B14+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMSF030I21+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMFF041B17+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMFF050E08+ AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
rJMFF045H23+ AGCAAGTTTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
                      ____________________________________________________________
consensus AGCAAGTCTGCTGCGCGTAGAATGCTCAAGCAAGGAGGGCTTTACTTGAACAATGCCCGA
 
. : . : . : . : . : . :
rJMFF035H22+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATTGTGGATGGAAAAGTTCTGCTT
rJMFF016B14+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATCGTGGATGGAAAAGTTCTGCTT
rJMSF030I21+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATTNTGGATGGAAAAGTTCTGCTT
rJMFF041B17+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATCGTGGATGGAAAAGTTCTGCTT
rJMFF050E08+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATTGTGGATGGAAAAGTTCTGCTT
rJMFF045H23+ GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATCGTGGATGGAAAAGTTCTGCTT
                      ____________________________________________________________
consensus GTTGATAGTGAGGCTAAGAAGATTGAGGAGGACGATATTGTGGATGGAAAAGTTCTGCTT
 
. : . : . : . : . : . :
rJMFF035H22+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMFF016B14+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMSF030I21+ NTGTCTGCAGGAAAGAAGAACAAGANGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMFF041B17+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMFF050E08+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
rJMSF008D13+ GCAGGAAAGNAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTNAT
rJMFF045H23+ TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
                      ____________________________________________________________
consensus TTGTCTGCAGGAAAGAAGAACAAGATGGTTGTGAGAATTTCCTGACCCATAGCTGCTTAT
 
. : . : . : . : . : . :
rJMFF035H22+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
rJMFF016B14+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
rJMSF030I21+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCANTAAAATAGATAAACCTT
rJMFF041B17+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
rJMFF050E08+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
rJMSF008D13+ TTNNTATTCCATNGACGTGGTAGAGACACAATGCCATCCCCATTAAAATAGATAAACCTT
rJMFF045H23+ TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCCCCATTAAAATAGATAAACCTT
                      ____________________________________________________________
consensus TTTTTATTCCATTGACGTGGTAGAGACACAATGCTATCACCATTAAAATAGATAAACCTT
 
. : . : . : . : . : . :
rJMFF035H22+ CATGATCAAGT-TGTATATCTCAATTCTCACCATAATTCTATATGCTATCGA
rJMFF016B14+ CATGATCAAGT-TGTATATCTCAATTCTCA-CATAAT
rJMSF030I21+ CATGATCAAGTCTGTATATCTCAATTCTCA-CATAATNCTATATGCTATCGAACCTT
rJMFF041B17+ CATGATCAAGT-TGTATATCTCAATTCTCA-CATAATTCTATATGCTATCGAACCTTTTT
rJMFF050E08+ CATGATCAAGT-TGTATATCCCAATTCTCA-CATAATTCTATATGCTATCGAACCTTTTT
rJMSF008D13+ CATG
rJMFF045H23+ CATGATCAAGT-TGTATATCTCAATTCTCA-CATAATTCTATATGCTATCGAACCTTTTT
                      ____________________________________________________________
consensus CATGATCAAGT-TGTATATCTCAATTCTCA-CATAATTCTATATGCTATCGAACCTTTTT
 
. : . : . : . : . : . :
rJMFF041B17+ GTATC
rJMFF050E08+ GTATC
rJMFF045H23+ GTATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus GTATCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCTCCAGGGTGATCCGCCATAAGG