Contig 005337:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005D11Sequence466009050 (8)ref|XP_009799456.1|1e-32PREDICTED: probable protein phosphatase 2C 5 [Nicotiana sylvestris]639005337 (4)ref|XP_009599009.1|5e-55PREDICTED: probable protein phosphatase 2C 5 [Nicotiana tomentosiformis]
JMFF016A15Sequence570009050 (8)ref|XP_009799456.1|2e-96PREDICTED: probable protein phosphatase 2C 5 [Nicotiana sylvestris]636005337 (4)ref|XP_009599009.1|3e-42PREDICTED: probable protein phosphatase 2C 5 [Nicotiana tomentosiformis]
JMFF037D15Sequence564009050 (8)ref|XP_009799456.1|7e-95PREDICTED: probable protein phosphatase 2C 5 [Nicotiana sylvestris]626005337 (4)ref|XP_009599009.1|9e-43PREDICTED: probable protein phosphatase 2C 5 [Nicotiana tomentosiformis]
JMFF039F14Sequence463009050 (8)ref|XP_009799456.1|5e-70PREDICTED: probable protein phosphatase 2C 5 [Nicotiana sylvestris]660005337 (4)ref|XP_009599009.1|3e-48PREDICTED: probable protein phosphatase 2C 5 [Nicotiana tomentosiformis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMFF039F14+ GGTTG
                      ____________________________________________________________
consensus GGTTG
 
. : . : . : . : . : . :
rJMFF037D15+ CCGCCAACGCCTATAAAGAAACAAAGTT
rJMFF016A15+ CCGCCAACGCCTATAAAGAAACAAAGTT
rJMFF039F14+ TTGATATTATTCCTTATGACCGACCTGCCTTACCGCCAACGCCTATAAAGAAACAAAGTT
rJMFF005D11+ CCGCCAACGCCTATAAAGAAACAAAGTT
                      ____________________________________________________________
consensus TTGATATTATTCCTTATGACCGACCTGCCTTACCGCCAACGCCTATAAAGAAACAAAGTT
 
. : . : . : . : . : . :
rJMFF037D15+ TGTTTAGTTCNCTCATATTTGGGNGGAAATCACATAACTTTAGGTCCAATAAGCTNTNTG
rJMFF016A15+ TGTTTAGTTCNCTCATNTTTGGGAGGAAATCNCATAACTTTAGGTCCAATAAGCTNTTTG
rJMFF039F14+ TGTTTAGTTCACTCATATTTGGGAGGAAATCNCATAACTTTAGGTCCAATAANCTNTTTG
rJMFF005D11+ TGTTTAGTTCNCTCATATTTGGGAGGAAATCACATAACTTTAGGTCCAATAAGCTTTNTG
                      ____________________________________________________________
consensus TGTTTAGTTCACTCATATTTGGGAGGAAATCACATAACTTTAGGTCCAATAAGCTTTTTG
 
. : . : . : . : . : . :
rJMFF037D15+ CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGCGACTGG
rJMFF016A15+ CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGCGACTGG
rJMFF039F14+ CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGNGACTGG
rJMFF005D11+ CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGNGACTGG
                      ____________________________________________________________
consensus CAGTTGGTGTTGTGGAAGAATTGTTTGAAGAGGGATCCGCAATGCTTGCAGAGCGACTGG
 
. : . : . : . : . : . :
rJMFF037D15+ GGAAGGATTTTCCTNTNGACTCAAGCTTTGGTATTTTCAGANGTGCTGTATGCCAAGCAG
rJMFF016A15+ GGAAGGATTTTCCTNTNGACTCAAGCTTTGGTATTTTCAGANGTGCTGTATGCCAAGCAG
rJMFF039F14+ GGAAGGATTTTCCTNTNGACTCAANCTTTGGTATTTTCAGANGTGCTGTATGCCAAGCAG
rJMFF005D11+ GGAAGGATTTTCCTNTNGACTCAAGCTTTGGTATTTTCAGATGTGCTGTATGCCAAGCAG
                      ____________________________________________________________
consensus GGAAGGATTTTCCTNTNGACTCAAGCTTTGGTATTTTCAGATGTGCTGTATGCCAAGCAG
 
. : . : . : . : . : . :
rJMFF037D15+ ATCAGCCGCCAAGCGAGGGNTTGTNTGTTAATTCGGGTCCCTTTNTTTTNGCCTGCATAA
rJMFF016A15+ ATCANCCGCCAAGNGAGGGCTTGTNTGTTAATTNGGGTCCCTTTTTTTTNGCCTGCATAA
rJMFF039F14+ ATCAGCCGCCNAGNGAGGGNTTGTNTGTTAATTCGGGTCCCTTTTTTTTNGCCTGCATAA
rJMFF005D11+ ATCAGCCGCCNAACGAGGGNTTGTTTGTTAATTNGGGTCCC-TTTTTTTNGCCTGCATCA
                      ____________________________________________________________
consensus ATCAGCCGCCAAGCGAGGGCTTGTTTGTTAATTCGGGTCCCTTTTTTTTNGCCTGCATAA
 
. : . : . : . : . : . :
rJMFF037D15+ AANCCGTGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
rJMFF016A15+ AANCCGTGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
rJMFF039F14+ AANCCGTGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
rJMFF005D11+ AANCCGNGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
                      ____________________________________________________________
consensus AANCCGTGGGAAGGTCCATTCCTATGNGCAACTTGTNGTAGGAAGAAAGATGCAATGGAA
 
. : . : . : . : . : . :
rJMFF037D15+ GGAAAAAGGNTGAGTAGACCAGCGGTTATTGCATAAGTTCATTAACTTAGNGATGNTGAT
rJMFF016A15+ GGAAAAAGGNTGAGTAGACCAGCGGTTATTGCATAAGTTCATTAACTTAGNGATGNTGAT
rJMFF039F14+ GGAAAAAGGNTGAGTAGACCAGCGGTTATTGCATAAGTTCATTAACTTAGNGATGNTGAT
rJMFF005D11+ GGAAAAAGGNTGAGTAGNCCAGCGGTTNTTGCATAAGTTCATTAACTTAGNGATGNTGAT
                      ____________________________________________________________
consensus GGAAAAAGGNTGAGTAGACCAGCGGTTATTGCATAAGTTCATTAACTTAGNGATGNTGAT
 
. : . : . : . : . : . :
rJMFF037D15+ ANATATATATTTTTTTGCCTGGCGNGTAAACCATGCTCGGTTTTCANCTGTTTTAGTTAC
rJMFF016A15+ ATATATATATTTTTTTGCCTGGCGNGTAAACCATGCTCGGTTTTCAGCTGTTTTAGTTAC
rJMFF039F14+ ATATATATATTTTTTTGCCTGGCGNGTAAACCATGCTNGGTTTTCAGCTGTTTTAGTTAC
rJMFF005D11+ ATATATATATTTTTTTGCCTGGNGNGTAAACCATGCTCGGTTTTCAGCTGTGTTAGTTAC
                      ____________________________________________________________
consensus ATATATATATTTTTTTGCCTGGCGNGTAAACCATGCTCGGTTTTCAGCTGTTTTAGTTAC
 
. : . : . : . : . : . :
rJMFF037D15+ ANGCAATAGATTGTGTGTAAGAAANGTAGTGAGTTTTTAGGCGTTTGGTGANCCGTCAAA
rJMFF016A15+ ANGCAATAGATTGNGNGTAAGAAANGTAGNGAGTTTTTAGGCGTTTGGTGANCCGTCAAA
rJMFF039F14+ ANGCAATAGATTGNGNGTAAGAAANGTAGTGANTTTTTAGGCGTTTGGTGANCCGTCAAA
rJMFF005D11+ ANGCAATAGATTGNGNGTAAGAAANGTAGNGAGTTTTTAGGCGTTTGGTGANCCGTCAAA
                      ____________________________________________________________
consensus ANGCAATAGATTGTGTGTAAGAAANGTAGTGAGTTTTTAGGCGTTTGGTGANCCGTCAAA
 
. : . : . : . : . : . :
rJMFF037D15+ NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
rJMFF016A15+ NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
rJMFF039F14+ NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
rJMFF005D11+ NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
                      ____________________________________________________________
consensus NCCTTTTTTTTTTTCCCTTCTTTTGTTGATTTATTTGTGTTCGACTGACCAAGAGCGGAA
 
. : . : . : . : . : . :
rJMFF037D15+ GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATATAAGTAA
rJMFF016A15+ GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATATAAGTAA
rJMFF039F14+ GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATATAAGTAA
rJMFF005D11+ GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATGTAAGTAATGAATGAAAAAGG
                      ____________________________________________________________
consensus GCTGATCTCTATATATATGATTGCTAACAGCTTGAATATATAAGTAATGAATGAAAAAGG