| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF037A17 | Sequence | 521 | 005246 (4) | ref|XP_009775599.1| | 126 | PREDICTED: uncharacterized protein LOC104225490 [Nicotiana sylvestris] ref|XP_00 | 707 | 001451 (4) | emb|CDP08657.1| | 2e-48 | unnamed protein product [Coffea canephora] |
| JMSF024G16 | Sequence | 677 | 005246 (4) | ref|XP_009775599.1| | 185 | PREDICTED: uncharacterized protein LOC104225490 [Nicotiana sylvestris] ref|XP_00 | 775 | 001451 (4) | emb|CDP08657.1| | 1e-50 | unnamed protein product [Coffea canephora] |
| JMSF041B12 | Sequence | 563 | 005246 (4) | ref|XP_009775599.1| | 163 | PREDICTED: uncharacterized protein LOC104225490 [Nicotiana sylvestris] ref|XP_00 | 625 | 001451 (4) | emb|CDP08657.1| | 5e-25 | unnamed protein product [Coffea canephora] |
| JMSF052O03 | Sequence | 640 | 005246 (4) | ref|XP_009775599.1| | 182 | PREDICTED: uncharacterized protein LOC104225490 [Nicotiana sylvestris] ref|XP_00 | 939 | 001451 (4) | emb|CDP08657.1| | 7e-50 | unnamed protein product [Coffea canephora] |
This contig is upended
. : . : . : . : . : . :
JMSF024G16+ AAGCTCGCTGGCCGGTTTAGAG
____________________________________________________________
consensus AAGCTCGCTGGCCGGTTTAGAG
. : . : . : . : . : . :
JMSF024G16+ ACGGGGCAATCAAATGATTCTGTCATTCTAAAACCGGTGGGATTCTTGATGCTCTCGAGT
____________________________________________________________
consensus ACGGGGCAATCAAATGATTCTGTCATTCTAAAACCGGTGGGATTCTTGATGCTCTCGAGT
. : . : . : . : . : . :
JMSF024G16+ CTAAGACAATCATCTAGGGAATCACTACCAAATGCAGTGTCGAGTTTTTTGTCTCCTATT
JMSF052O03+ CTAGGGAATCACTACCAAATGCAGTGTCGAGTTTTTTGTCTCCTATT
____________________________________________________________
consensus CTAAGACAATCATCTAGGGAATCACTACCAAATGCAGTGTCGAGTTTTTTGTCTCCTATT
. : . : . : . : . : . :
JMFF037A17+ CCGAGGTCGTTTTTAACACTAGCCGACATTTTAACCTGAGAATCGAGTAAAGATTTGTCC
JMSF024G16+ CCGAGGTCGTTTTTAACACTAGCCGACATTTTAACCTGAGAATCGAGTAAAGATTTGTCC
JMSF052O03+ CCGAGGTCGTTTTTAACACTAGCCGACATTTTAACCTGAGAATCGAGTAAAGATTTGTCC
JMSF041B12+ TGAGAATCGAGTAAAGATTTGTCC
____________________________________________________________
consensus CCGAGGTCGTTTTTAACACTAGCCGACATTTTAACCTGAGAATCGAGTAAAGATTTGTCC
. : . : . : . : . : . :
JMFF037A17+ ACCGTAAACTCGTCAACATATTCAATCTCATATTCACTAAGCTTGGAGGTTGAATTTCCA
JMSF024G16+ ACCGTAAACTCGTCAACATATTCAATCTCATATTCACTAAGCTTGGAGGTTGAATTTCCA
JMSF052O03+ ACCGTAAACTCGTCAACATATTCAATCTCATATTCACTAAGCTTGGAGGTTGAATTTCCA
JMSF041B12+ ACCGTAAACTCGTCAACATATTCAATCTCATATTCACTAAGCTTGGAGGTTGAATTTCCA
____________________________________________________________
consensus ACCGTAAACTCGTCAACATATTCAATCTCATATTCACTAAGCTTGGAGGTTGAATTTCCA
. : . : . : . : . : . :
JMFF037A17+ AAGGTCGAAGAACCTTGCATCTCGTCTACCGAAAGGAGGTGTTCACCAGCTAAACCCCCT
JMSF024G16+ AAGGTCGAAGAACCTTGCATCTCGTCTACCGAAAGGAGGTGTTCACCAGCTAAACCCCCT
JMSF052O03+ AAGGTCGAAGAACCTTGCATCTCGTCTACCGAAAGGAGGTGTTCACCAGCTAAACCCCCT
JMSF041B12+ AAGGTCGAAGAACCTTGCATCTCGTCTACCGAAAGGAGGTGTTCACCAGCTAAACCCCCT
____________________________________________________________
consensus AAGGTCGAAGAACCTTGCATCTCGTCTACCGAAAGGAGGTGTTCACCAGCTAAACCCCCT
. : . : . : . : . : . :
JMFF037A17+ TGATATCCATAATTGGGTTTAAGATGTAGCCACCATCTCGAGTTAGGAGATAGATTTGAA
JMSF024G16+ TGATATCCATAATTGGGTTTAAGATGTAGCCACCATCTCGAGTTAGGAGATAGATTTGAA
JMSF052O03+ TGATATCCATAATTGGGTTTAAGATGTAGCCACCATCTCGAGTTAGGAGATAGATTTGAA
JMSF041B12+ TGATATCCATAATTGGGTTTAAGATGTAGCCACCATCTCGAGTTAGGAGATAGATTTGAA
____________________________________________________________
consensus TGATATCCATAATTGGGTTTAAGATGTAGCCACCATCTCGAGTTAGGAGATAGATTTGAA
. : . : . : . : . : . :
JMFF037A17+ TACGAAGAGTTCCAATTAGAAGGGAGGAAACACGCTCTCTCAGCATCTTGCGGATTGGCA
JMSF024G16+ TACGAAGAGTTCCAATTAGAAGGGAGGAAACACGCTCTCTCAGCATCTTGCGGATTGGCA
JMSF052O03+ TACGAAGAGTTCCAATTAGAAGGGAGGAAACACGCTCTCTCAGCATCTTGCGGATTGGCA
JMSF041B12+ TACGAAGAGTTCCAATTAGAAGGGAGGAAACACGCTCTCTCAGCATCTTGCGGATTGGCA
____________________________________________________________
consensus TACGAAGAGTTCCAATTAGAAGGGAGGAAACACGCTCTCTCAGCATCTTGCGGATTGGCA
. : . : . : . : . : . :
JMFF037A17+ GCAGATGCGGGTCCCGTATCTACTTCTTTCGCCGAGGGTGATGTTGGCGGACAACAAGCC
JMSF024G16+ GCAGATGCGGGTCCCGTATCTACTTCTTTCGCCGAGGGTGATGTTGGCGGACAACAAGCC
JMSF052O03+ GCAGATGCGGGTCCCGTATCTACTTCTTTCGCCGAGGGTGATGTTGGCGGACAACAAGCC
JMSF041B12+ GCAGATGCGGGTCCCGTATCTACTTCTTTCGCCGAGGGTGATGTTGGCGGACAACAAGCC
____________________________________________________________
consensus GCAGATGCGGGTCCCGTATCTACTTCTTTCGCCGAGGGTGATGTTGGCGGACAACAAGCC
. : . : . : . : . : . :
JMFF037A17+ AACTTCGGGGCTCCTTTTGGCATCTTCCTGGACAAAGCATCGGTTAGCTGTTCTCTGCCA
JMSF024G16+ AACTTCGGGGCT-CTTTTGGCATCTTCCTGGACAAAGCATCGGTTAGCTGTTCTCTGCCA
JMSF052O03+ AACTTCGGGGCT-CTTTTGGCATCTTCCTGGACAAAGCATCGGTTAGCTGTTCTCTGCCA
JMSF041B12+ AACTTCGGGGCT-CTTTTGGCATCTTCCTGGACAAAGCATCGGTTAGCTGTTCTCTGCCA
____________________________________________________________
consensus AACTTCGGGGCT-CTTTTGGCATCTTCCTGGACAAAGCATCGGTTAGCTGTTCTCTGCCA
. : . : . : . : . : . :
JMFF037A17+ AGCAGCCCTTGCTTCAGCCACTGCCATTATTCGCCCGTTCTTCTGCACATTTCACT
JMSF024G16+ AGCAGCCCTTGCTTCAGCCACTGCCATTATTCGCCCGTTCTTCTGCACATTTCACT
JMSF052O03+ AGCAGCCCTTGCTTCAGCCACTGCCATTATTCGCCCGTTCTTCTGCACATTTCACTGAAA
JMSF041B12+ GGCAGCCCTTGCTTCAGCCACTGCCATTATTCGCCCGTTCTTCTGCACATTTCACTGAAA
____________________________________________________________
consensus AGCAGCCCTTGCTTCAGCCACTGCCATTATTCGCCCGTTCTTCTGCACATTTCACTGAAA
. : . : . : . : . : . :
JMSF052O03+ GAGTGTAAACCAAGAAAGAATTGTTGGAGTCTGAAAGAGAGAGAAAGAGAGAGATGGGTA
JMSF041B12+ GAGTGTAAACCAAGAAAGAATTGTTGGAGTCTGAAAGAGAGAGAAAGAGAGAGATGGGTA
____________________________________________________________
consensus GAGTGTAAACCAAGAAAGAATTGTTGGAGTCTGAAAGAGAGAGAAAGAGAGAGATGGGTA
. : . : . : . : . : . :
JMSF052O03+ GTCTTTGGGTTCAAAAAGACAAGATTTTTGCTCATCTTTTTAATTTCATTTTC
JMSF041B12+ GTCTTTGGGTTCAAAAAGACAAGATTTTTGCTCATCTTTTTAATTTCATTTTCATTTTCC
____________________________________________________________
consensus GTCTTTGGGTTCAAAAAGACAAGATTTTTGCTCATCTTTTTAATTTCATTTTCATTTTCC