Contig 005095:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF002K10Sequence560005095 (5)ref|XP_006344882.1|3e-75PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum]737002503 (5)ref|XP_006344882.1|7e-10PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum]
JMFF005L03Sequence479005095 (5)ref|XP_006344882.1|8e-58PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum]299002503 (5)
JMFS072A09Sequence627005095 (5)ref|XP_006344882.1|4e-108PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum]
JMSF017E04Sequence239005095 (5)ref|XP_009790873.1|6e-09PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like isoform X2 [Nicotiana790002503 (5)ref|XP_006352533.1|1e-20PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum]
JMSF023O11Sequence664005095 (5)ref|XP_006352343.1|2e-66PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum]779002503 (5)ref|XP_006352533.1|1e-17PREDICTED: heterogeneous nuclear ribonucleoprotein 1-like [Solanum tuberosum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS072A09+ AGGTTTTATACAATGCCCTATCCACCGCATCCTCCGAATC
JMSF023O11+ GAATC
                      ____________________________________________________________
consensus AGGTTTTATACAATGCCCTATCCACCGCATCCTCCGAATC
 
. : . : . : . : . : . :
JMFS072A09+ ATAAGTTATGAACCCGAACCCTCTTGGCCGTTGAGTGTTGTGGTCGTACATCACAACCAC
JMSF023O11+ ATAAGTTATAAATCCAAACCCTCTCGGGCGTTGAGTGTTGTGGTCATACATCACTACAAC
                      ____________________________________________________________
consensus ATAAGTTATGAATCCGAACCCTCTTGGGCGTTGAGTGTTGTGGTCGTACATCACTACCAC
 
. : . : . : . : . : . :
JMFS072A09+ ATCCGTGATCGTGCCAAACTGATCAAAGTACTTCTTAAAGTCACTTTCGGTAACTGTGGA
JMFF002K10+ CCAAACTGGTCAAAGTAATTCTTAAAGTCATTCTCAGTGACAGTAGA
JMSF023O11+ ATCTGTAATTGTACCAAACTGGTCAAAGTAATTCTTAAAGTCATTCTCAGTGACAGTAGA
                      ____________________________________________________________
consensus ATCTGTGATTGTGCCAAACTGGTCAAAGTAATTCTTAAAGTCATTCTCAGTGACAGTAGA
 
. : . : . : . : . : . :
JMFS072A09+ TGCTAACCCTCCTACAAAAATCTTTTTTGTGCGTCCAGGACCCGGAGACCCTTGAATGCT
JMFF005L03+ GTGCGTCCAGGACCCGGAGATCCTTGAATTCC
JMFF002K10+ TGCTAATCCTCCTACAAATATCTTTTTAGTGCGTCCAGGACCCGGAGATCCTTGAATTCC
JMSF023O11+ TGCTAATCCTCCTACAAATATCTTTTTAGTGCGTCCAGGACCCGGAGATCCTTGAATTCC
                      ____________________________________________________________
consensus TGCTAATCCTCCTACAAATATCTTTTTAGTGCGTCCAGGACCCGGAGATCCTTGAATTCC
 
. : . : . : . : . : . :
JMFS072A09+ GCTATTGCTTCTATTTATTATGTTTTGGTCATCCCTAGGTACAGCCTTCTTCGCCTCAAC
JMFF005L03+ ACCATTGTTTCTATTTATCATGTTTTGGTCATCCCTTGGTACAGCCTTCTTTGCTTCAAC
JMFF002K10+ ACCATTGTTTCTATTTATCATGTTTTGGTCATCCCTTGGTACAGCCTTCTTTGCTTCAAC
JMSF023O11+ ACCATTGTTTCTA-TCATCATGTTTTGGTCATCCCTTGGTACAGCCTTCTTTGCTTCAAC
                      ____________________________________________________________
consensus ACCATTGTTTCTATTTATCATGTTTTGGTCATCCCTTGGTACAGCCTTCTTTGCTTCAAC
 
. : . : . : . : . : . :
JMFS072A09+ AGTTCTTCCATCTATCATATGCTTCTCCTTCACCACTCGTTCAGCAACTGCAGGATCAGC
JMFF005L03+ GGTTCGCCCATCTATCATATGCTTCTCCTTGACAACTCTTTCAGCAACTGCAGGATCAGC
JMFF002K10+ GGTTCGCCCATCTATCATATGCTTCTCCTTGACAACTCTTTCAGCAACTGCAGGATCAGC
JMSF023O11+ GGTTCGCCCATCTATCATATGCTTCTCCTTGACAACTCTTTCAGCAACTGCAGGATCAGC
                      ____________________________________________________________
consensus GGTTCGCCCATCTATCATATGCTTCTCCTTGACAACTCTTTCAGCAACTGCAGGATCAGC
 
. : . : . : . : . : . :
JMFS072A09+ AAAGACCACAAAACCGAAACCTCGGGCACGACCAGTGTTGCGATCTCTCATGATCACAGC
JMFF005L03+ AAATATCACAAAACCAAAACCACGAGCCCGACCAGTATTGCGATCTCTCATGATTACAGC
JMFF002K10+ AAATATCACAAAACCAAAACCACGAGCCCGACCAGTATTGCGATCTCTCATGATTACAGC
JMSF023O11+ AAATATCACAAAACCAAAACCACGAGCCCGACCAGTATTGCGATCTCTCATGATTACAGC
                      ____________________________________________________________
consensus AAATATCACAAAACCAAAACCACGAGCCCGACCAGTATTGCGATCTCTCATGATTACAGC
 
. : . : . : . : . : . :
JMFS072A09+ CTCAACCACTTCTCCATACGATCTAAAATACTCTTTAAGACGATCCTCATCCGTGTCCCA
JMFF005L03+ CTCCACCACTTCTCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
JMFF002K10+ CTCCACCACTTCTCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
JMSF017E04+ TCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
JMSF023O11+ CTCCACCACTTCTCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
                      ____________________________________________________________
consensus CTCCACCACTTCTCCATAAGATCTAAAATACTCTTTGAGACATTCCTCATCGGTGTCCCA
 
. : . : . : . : . : . :
JMFS072A09+ AGATATTCCACCAATGAATAGCTTACCGAGATCCGATTCCATCATT
JMFF005L03+ AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
JMFF002K10+ AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
JMSF017E04+ AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
JMSF023O11+ AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
                      ____________________________________________________________
consensus AGATATCCCACCAATAAATACCTTACCGAGATCTGACTCCATCATTCTAGAAAAATCAGG
 
. : . : . : . : . : . :
JMFF005L03+ CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
JMFF002K10+ CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
JMSF017E04+ CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
JMSF023O11+ CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
                      ____________________________________________________________
consensus CAGACCTCAGTTGCAAATACTGAATGGGAAGCGTTAGATTCAATCCAGGAACATTGGATC
 
. : . : . : . : . : . :
JMFF005L03+ CCTGTTGCATCAATCAAAGCCCAATCCAACAGCT
JMFF002K10+ CCTGTTGCATCAATCAAAACCCAATCCAACAGCT
JMSF017E04+ CCTGTTGCATCAATCAAAACCCAATCCAACAGCT
JMSF023O11+ CCTGTTGCATCAATCAAAACCCAATCCAACAGCTGGATTTTATATGTAGAAGAAGAAAAC
                      ____________________________________________________________
consensus CCTGTTGCATCAATCAAAACCCAATCCAACAGCTGGATTTTATATGTAGAAGAAGAAAAC
 
. : . : . : . : . : . :
JMSF023O11+ AGAGGATGTGCTCATCCTCTCTCTCCCTTTCTCTTTCTCCAAAAGTCCCTCTCTTCTGTC
                      ____________________________________________________________
consensus AGAGGATGTGCTCATCCTCTCTCTCCCTTTCTCTTTCTCCAAAAGTCCCTCTCTTCTGTC