Contig 005035:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF031K13Sequence568005035 (8)ref|XP_008456001.1|2e-112PREDICTED: ATPase family AAA domain-containing protein 1-B-like [Cucumis melo]659005831 (7)ref|XP_007039158.1|8e-75P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor
JMFF047E24Sequence411005035 (8)gb|KGN57645.1|5e-64hypothetical protein Csa_3G238110 [Cucumis sativus]333005831 (7)
JMSF005J07Sequence336005035 (8)ref|XP_010109212.1|199ATPase family AAA domain-containing protein 1-A [Morus notabilis] gb|EXC21392.1|378005831 (7)ref|XP_011084744.1|1e-10PREDICTED: ATPase family AAA domain-containing protein 1 [Sesamum indicum]
JMSF016M02Sequence201005035 (8)emb|CDY19035.1|6e-21BnaC01g20330D [Brassica napus]664005831 (7)ref|XP_007039158.1|3e-79P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor
JMSF017E01Sequence281005035 (8)ref|XP_004145937.1|7e-49PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativu806016075ref|XP_007039158.1|3e-75P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor
JMSF044B11Sequence663005035 (8)ref|XP_004145937.1|5e-138PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativu586005831 (7)ref|XP_007039158.1|2e-62P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor
JMSF049F09Sequence689005035 (8)ref|XP_004145937.1|3e-146PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativu736005831 (7)ref|XP_007039158.1|4e-77P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor
JMSF051G24Sequence666005035 (8)ref|XP_004145937.1|7e-139PREDICTED: ATPase family AAA domain-containing protein 1-A-like [Cucumis sativu746005831 (7)ref|XP_007039158.1|6e-97P-loop containing nucleoside triphosphate hydrolases superfamily protein isofor

Alignment

This contig is upended


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JMSF049F09+                   TGATCAGTGGTGAAACCATCCCACAAAGCCATGAATTCAGTCTTCATATTAG
JMSF044B11+                                               CCATGAATTCAGTCTTCATATTAG
JMSF051G24+                                               CCATGAATTCAGTCTTCATATTAG
                      ____________________________________________________________
consensus                     TGATCAGTGGTGAAACCATCCCACAAAGCCATGAATTCAGTCTTCATATTAG
 
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JMSF049F09+           TTAATGCTTCATGGTCAGTAGACTTCCGTTGACCCAAAAAACTATCCACCTCATCAATAA
JMSF044B11+           TTAATGCTTCATGGTCAGTAGACTTCCGTTGACCCAAAAAACTATCCACCTCATCAATAA
JMSF051G24+           TTAATGCTTCATGGTCAGTAGACTTCCGTTGACCCAAAAAACTATCCACCTCATCAATAA
                      ____________________________________________________________
consensus             TTAATGCTTCATGGTCAGTAGACTTCCGTTGACCCAAAAAACTATCCACCTCATCAATAA
 
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JMSF049F09+           ATATAATCGCTGGCTGGAGTTTATATGCCAGGCTAAATACAGCAGCCACTAGTTTTTGAG
JMSF044B11+           ATATAATCGCTGGCTGGAGTTTATATGCCAGGCTAAATACAGCAGCCACTAGTTTTTGAG
JMSF051G24+           ATATAATCGCTGGCTGGAGTTTATATGCCAGGCTAAATACAGCAGCCACTAGTTTTTGAG
JMFF031K13+                         TGGAGTTTATATGCCAGGCTAAATACAGCAGCCACTAGTTTTTGAG
                      ____________________________________________________________
consensus             ATATAATCGCTGGCTGGAGTTTATATGCCAGGCTAAATACAGCAGCCACTAGTTTTTGAG
 
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JMSF049F09+           CATCACCAAACCACTTGCTCATAAGATTGGAAATCTTTACATTGATGAAAACAGCCCTTG
JMSF044B11+           CATCACCAAACCACTTGCTCATAAGATTGGAAATCTTTACATTGATGAAAACAGCCCTTG
JMSF051G24+           CATCACCAAACCACTTGCTCATAAGATTGGAAATCTTTACATTGATGAAAACAGCCCTTG
JMFF031K13+           CATCACCAAACCACTTGCTCATAAGATTGGAAATCTTTACATTGATGAAAACAGCCCTTG
                      ____________________________________________________________
consensus             CATCACCAAACCACTTGCTCATAAGATTGGAAATCTTTACATTGATGAAAACAGCCCTTG
 
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JMSF049F09+           ATTCTTTTGCAATTGCTTTGGCAAGCATAGTCTTGCCAGTGCCAGGTGGTCCATATAGCA
JMSF044B11+           ATTCTTTTGCAATTGCTTTGGCAAGCATAGTCTTGCCAGTGCCAGGTGGTCCATATAGCA
JMSF051G24+           ATTCTTTTGCAATTGCTTTGGCAAGCATAGTCTTGCCAGTGCCAGGTGGTCCATATAGCA
JMFF047E24+                                                           GTCCATATAGCA
JMFF031K13+           ATTCTTTTGCAATTGCTTTGGCAAGCATAGTCTTGCCAGTGCCAGGTGGTCCATATAGCA
                      ____________________________________________________________
consensus             ATTCTTTTGCAATTGCTTTGGCAAGCATAGTCTTGCCAGTGCCAGGTGGTCCATATAGCA
 
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JMSF049F09+           ATACACCCTTTTGAGGACCAAGAAGTTTTCCATGAGAAAATAGCTCTGGTCTTTGTAGAG
JMSF044B11+           ATACACCCTTTTGAGGACCAAGAAGTTTTCCATGAGAAAATAGCTCTGGTCTTTGTAGAG
JMSF051G24+           ATACACCCTTTTGAGGACCAAGAAGTTTTCCATGAGAAAATAGCTCTGGTCTTTGTAGAG
JMSF005J07+                                                          GGTCTTTGTAGAG
JMFF047E24+           ATACACCCTTTGNAGGACCAAGAAGTTTTCCATGAGAAAATAGCTCTGGTCTTTGTAGAG
JMFF031K13+           ATACACCCTTTTGAGGACCAAGAAGTTTTCCATGAGAAAATAGCTCTGGTCTTTGTAGAG
                      ____________________________________________________________
consensus             ATACACCCTTTTGAGGACCAAGAAGTTTTCCATGAGAAAATAGCTCTGGTCTTTGTAGAG
 
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JMSF049F09+           GAAGAATCACCAATTCATACAATGCTTGTTTTATAGCTTCCAGTCCACCAATAGAATTGA
JMSF044B11+           GAAGAATCACCAATTCATACAATGCTTGTTTTATAGCTTCCAGTCCACCAATAGAATTGA
JMSF051G24+           GAAGAATCACCAATTCATACAATGCTTGTTTTATAGCTTCCAGTCCACCAATAGAATTGA
JMSF005J07+           GAAGAATCACCAATTCATACAATGCTTGTTTTATAGCTTCCAGTCCACCAATAGAATTGA
JMSF017E01+                                                     GTCCACCAATAGAATTGA
JMFF047E24+           GAAGAATCACCAATTCATACAATGCTTGTTTTATAGCTTCCAGTCCACCAATAGAATTGA
JMFF031K13+           GAAGAATCACCAATTCATACAATGCTTGTTTTATAGCTTCCAGTCCACCAATAGAATTGA
                      ____________________________________________________________
consensus             GAAGAATCACCAATTCATACAATGCTTGTTTTATAGCTTCCAGTCCACCAATAGAATTGA
 
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JMSF049F09+           ACTCCACATCAATATGATCAGGATTAATTACATCACATGCAATTACATCCTCGTAGGTAT
JMSF044B11+           ACTCCACATCAATATGATCAGGATTAATTACATCACATGCAATTACATCCTCGTAGGTAT
JMSF051G24+           ACTCCACATCAATATGATCAGGATTAATTACATCACATGCAATTACATCCTCGTAGGTAT
JMSF005J07+           ACTCCACATCAATATGATCAGGATTAATTACATCACATGCAATTACATCCTCGTAGGTAT
JMSF017E01+           ACTCCACATCAATATGATCAGGATTAATTACATCACATGCAATTACATCCTCGTAGGTAT
JMFF047E24+           ACTCCACATCAATATGATCAGGATTAATTACATCACATGCAATTACATCCTCGTAGGTAT
JMFF031K13+           ACTCCACATCAATATGATCAGGATTAATTACATCACATGCAATTACATCCTCGTAGGTAT
                      ____________________________________________________________
consensus             ACTCCACATCAATATGATCAGGATTAATTACATCACATGCAATTACATCCTCGTAGGTAT
 
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JMSF049F09+           TGGTCTGAATAAGCGGACGGCCAAGACGCTTGGCGATTTCCTTCTTGTTCTCGAGGGCTT
JMSF044B11+           TGGTCTGAATAAGCGGACGGCCAAGACGCTTGGCGATTTCCTTCTTGTTCTCGAGGGCTT
JMSF051G24+           TGGTCTGAATAAGCGGACGGCCAAGACGCTTGGCGATTTCCTTCTTGTTCTCGAGGGCTT
JMSF005J07+           TGGTCTGAATAAGCGGACGGCCAAGACGCTTGGCGATTTCCTTCTTGTTCTCGAGGGCTT
JMSF017E01+           TGGTCTGAATAAGCGGACGGCCAAGACGCTTGGCGATTTCCTTCTTGTTCTCGAGGGCTT
JMFF047E24+           TGGTCTGAATAAGCGGACGGCCAAGACGCTTGGCGATTTCCTTCTTGTTCTCGAGGGCTT
JMFF031K13+           TGGTCTGAATAAGCGGACGGCCAAGACGCTTGGCGATTTCCTTCTTGTTCTCGAGGGCTT
JMSF016M02+                                                  CCTTCTTGTTCTCGAGGGCTT
                      ____________________________________________________________
consensus             TGGTCTGAATAAGCGGACGGCCAAGACGCTTGGCGATTTCCTTCTTGTTCTCGAGGGCTT
 
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JMSF049F09+           TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
JMSF044B11+           TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
JMSF051G24+           TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
JMSF005J07+           TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
JMSF017E01+           TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
JMFF047E24+           TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
JMFF031K13+           TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
JMSF016M02+           TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
                      ____________________________________________________________
consensus             TCTTGGAGGCTTCACGGTTCGGGTCGAGATGTCGGAGCCCCACAAACAACACCAAGCAGC
 
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JMSF049F09+           TAATAGCGGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
JMSF044B11+           TAATAGCGGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
JMSF051G24+           TAATAGCCGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
JMSF005J07+           TAATAGCGGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
JMSF017E01+           TAATAGCGGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
JMFF047E24+           TAATAGCGGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
JMFF031K13+           TAATAGCGGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
JMSF016M02+           TAATAGCGGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
                      ____________________________________________________________
consensus             TAATAGCGGCGCTGGCGGCGTACAACACCAATTCCTGCAAGATCTTCGTCTCCGACGAAC
 
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JMSF049F09+           CCCCACCCTTCATCGCAACGATAAATCACAACCC                          
JMSF044B11+           CCCCACCCTTCATCGCAACGATAAATCACAACCCAAAT                      
JMSF051G24+           CCCCACCCTTCATCGCAACGATAAATCACAACCCAAAT                      
JMSF005J07+           CCCCACCCTTCATCGCAACGAT                                      
JMSF017E01+           CCCCACCCTTCATCGCAACGAT                                      
JMFF047E24+           CCCCACCCTTCATCGCAACGATAAATCACAACCCAAAT                      
JMFF031K13+           CCCCACCCTTCATCGCAACGATAAATCACAACCCAAAT                      
JMSF016M02+           CCCCACCCTTCATCGCAACGATAAATCACAACCCAAATAATACTCCCTAATTTTATTCCC
                      ____________________________________________________________
consensus             CCCCACCCTTCATCGCAACGATAAATCACAACCCAAATAATACTCCCTAATTTTATTCCC