clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF006B12 | Sequence | 533 | 004561 (7) | ref|XP_011076924.1| | 1e-95 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Sesamum i | 772 | 012492 (8) | ref|XP_009773275.1| | 3e-86 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
JMFF006D16 | Sequence | 496 | 004561 (7) | ref|XP_009773274.1| | 1e-54 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana | 773 | 012492 (8) | ref|XP_009773275.1| | 1e-87 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
JMFF012I07 | Sequence | 467 | 004561 (7) | ref|XP_009773274.1| | 8e-59 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana | 741 | 012492 (8) | ref|XP_009773275.1| | 5e-86 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
JMFF026B06 | Sequence | 473 | 004561 (7) | ref|XP_009773274.1| | 6e-61 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana | 751 | 012492 (8) | ref|XP_009773275.1| | 3e-90 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
JMFF031P17 | Sequence | 553 | 004561 (7) | ref|XP_011076924.1| | 9e-102 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Sesamum i | 779 | 012492 (8) | ref|XP_009773275.1| | 4e-90 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
JMFF051K08 | Sequence | 581 | 004561 (7) | ref|XP_009773274.1| | 1e-83 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X1 [Nicotiana | 160 | 012492 (8) | |||
JMSF016I06 | Sequence | 523 | 004561 (7) | gb|KDO42035.1| | 9e-36 | hypothetical protein CISIN_1g0164182mg, partial [Citrus sinensis] | 722 | 012492 (8) | ref|XP_009773275.1| | 3e-82 | PREDICTED: hippocampus abundant transcript-like protein 1 isoform X2 [Nicotiana |
This contig is upended
. : . : . : . : . : . :
JMFF006B12+ AGGTGGTTTAACTGTCTCGACTAGAGCCAGTCCCATATAAACAGGAACAAATATC
JMFF031P17+ TGGTTTAACTGTCTCGACTAGAGCCAGTCCCATATAAACAGGAACAAATATC
____________________________________________________________
consensus AGGTGGTTTAACTGTCTCGACTAGAGCCAGTCCCATATAAACAGGAACAAATATC
. : . : . : . : . : . :
JMFF006B12+ AAAAGGCATATTGAAACCACAAAAATGTAGTCCTCGGGAAGAAAACGTGCTAGGAGATCT
JMFF031P17+ AAAAGGCATATTGAAACCACAAAAATGTAGTCCTCGGGAAGAAAACGTGCTAGGAGATCT
JMFF051K08+ GAAGAAAACGTGCTAGGAGATCT
____________________________________________________________
consensus AAAAGGCATATTGAAACCACAAAAATGTAGTCCTCGGGAAGAAAACGTGCTAGGAGATCT
. : . : . : . : . : . :
JMFF006B12+ CCCACAACATGGGATGCAGAAAAAAAACCTGTAATCCAACTAAAAGCTGCAGCTCGGTTG
JMFF031P17+ CCCACAACATGGGATGCAGAAAAAAAACCTGTAATCCAACTAAAAGCTGCAGCTCGGTTG
JMFF051K08+ CCCACAACATGGGATGCAGAAAAAAAACCTGTAATCCAACTAAAAGCTGCAGCTCGGTTG
____________________________________________________________
consensus CCCACAACATGGGATGCAGAAAAAAAACCTGTAATCCAACTAAAAGCTGCAGCTCGGTTG
. : . : . : . : . : . :
JMFF006B12+ CTCTCCTCAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCTTGACTT
JMFF031P17+ CTCTCCTCAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCTTGACTT
JMFF051K08+ CTCTCCTCAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCTTGACTT
JMFF012I07+ TGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCNTGACTT
JMFF026B06+ CAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCNTGACTT
____________________________________________________________
consensus CTCTCCTCAACAACATCTGCCGCATAAGCAACAGAGATGCAAAAAATGCTTCCTTGACTT
. : . : . : . : . : . :
JMFF006B12+ ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCTTGACTTGTTA
JMFF031P17+ ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCTTGACTTGTTA
JMFF051K08+ ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCTTGACTTGTTA
JMFF012I07+ ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCNTGACTTGTTA
JMFF026B06+ ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCNTGACTTGTTA
____________________________________________________________
consensus ATAATATAAGAAATTGTCCGAAGAACATAGTAAGCATACACAAAGCCCCTTGACTTGTTA
. : . : . : . : . : . :
JMFF006B12+ ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMFF031P17+ ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGCGACAAGAAGAAGAGGTTTT
JMFF051K08+ ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMFF012I07+ ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMFF006D16+ TAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMSF016I06+ TAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
JMFF026B06+ ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
____________________________________________________________
consensus ATGGCAAGTAAAGTAAAAGGTATAATTGTTGTAGATACAGTGACAAGAAGAAGAGGTTTT
. : . : . : . : . : . :
JMFF006B12+ CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF031P17+ CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF051K08+ CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF012I07+ CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF006D16+ CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCNCCATCTTGAATATCCCA
JMSF016I06+ CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
JMFF026B06+ CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
____________________________________________________________
consensus CGCCCATAATCATCTGAAAGCTGACCAAGTACAGGAAGTACCACCATCTTGAATATCCCA
. : . : . : . : . : . :
JMFF006B12+ ACAACAGTTTGTTGAAGTCCATTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
JMFF031P17+ ACAACAGTTTGTTGAAGTCCATTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
JMFF051K08+ ACAACAGTTTGTTGAAGTCCATTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
JMFF012I07+ ACAACAGTTTGTTGAAGTCCANTGATGTAGATAGCTTCAGAGCAAGAGGANTGGCCATCA
JMFF006D16+ ACAACAGTTTGTTGAAGTCCANTGATGTAGATAGNTTCAGAGCAAGAGGNNTGGCCATCA
JMSF016I06+ ACAACAGTTTGTTGAAGTCCANTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
JMFF026B06+ ACAACAGTTTGTTGAAGTCCANTGATGTAGATAGCTTCAGAGCAAGAGGANTGGCCATCA
____________________________________________________________
consensus ACAACAGTTTGTTGAAGTCCATTGATGTAGATAGCTTCAGAGCAAGAGGACTGGCCATCA
. : . : . : . : . : . :
JMFF006B12+ CAGAGAGCATTGGTGGTGACATCAACCAGCACAGATTTAGTCATCTCCTCGGCAATCC
JMFF031P17+ CAGAGAGCATTGGTGGTGACATCAACCAGCACAGATTTAGTCATCTCCTCGGCAATCCAG
JMFF051K08+ CAGAGAGCATTGGTGGTGACATCAACCAGCACAGATTTAGTCATCTCCTCGGCAATCCAG
JMFF012I07+ CAGAGAGCANTGGTGGTGACATCAACCAGCACAGATNTAGTCATCTCCTCGGCAATCCAG
JMFF006D16+ CAGAGAGCANTGGTGGNGACATCANCCAGCACAGATNTAGTCATCTCCTCGGCAATCCAG
JMSF016I06+ CAGAGAGCATTGGTGGNGACATCAACCAGCACAGANTTAGTCATCTCCTCGGCAATCCAG
JMFF026B06+ CAGAGAGCANTGGTGGTGACATCAACCAGCACAGATNTAGTCATCTCCTCGGCAATCCAG
____________________________________________________________
consensus CAGAGAGCATTGGTGGTGACATCAACCAGCACAGATTTAGTCATCTCCTCGGCAATCCAG
. : . : . : . : . : . :
JMFF031P17+ TGAACACATAGTGGAACCAGT
JMFF051K08+ TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
JMFF012I07+ TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
JMFF006D16+ TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
JMSF016I06+ TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
JMFF026B06+ TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
____________________________________________________________
consensus TGAACACATAGTGGAACCAGTAAGTGCACTAATGGCCTCAGCACTCTCATTTTCTCCCTC
. : . : . : . : . : . :
JMFF051K08+ ATT
JMFF012I07+ ANTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTGTATTGAGCACTCAC
JMFF006D16+ ATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTGTATTGAGCACTCAC
JMSF016I06+ ATT
JMFF026B06+ ANTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTGTATTGAGCACTCACGAAGGAT
____________________________________________________________
consensus ATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTGTCTGTATTGAGCACTCACGAAGGAT