| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMCP010A08 | Sequence | 520 | 004334 (4) | ref|XP_010087086.1| | 6e-75 | 50S ribosomal protein L18 [Morus notabilis] gb|EXB26141.1| 50S ribosomal protein | |||||
| JMFN006H07 | Sequence | 624 | 004334 (4) | ref|XP_009803342.1| | 5e-76 | PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana sylvestris] | |||||
| JMFN034J01 | Sequence | 632 | 004334 (4) | ref|XP_009803342.1| | 7e-76 | PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana sylvestris] | |||||
| JMSF038D08 | Sequence | 669 | 000787 (2) | ref|XP_006364811.1| | 2e-36 | PREDICTED: cytochrome P450 82A3-like [Solanum tuberosum] | 707 | 004334 (4) | ref|XP_009803342.1| | 1e-75 | PREDICTED: 50S ribosomal protein L18, chloroplastic-like [Nicotiana sylvestris] |
This contig is upended
. : . : . : . : . : . :
JMFN034J01+ GCAACAATTGCAATTAA
JMCP010A08+ GCAACAtTTGgAtTTAA
rJMSF038D08- AATCAGAAAAATCTAGAAGAGAGACTTGAAGCAACAATTGCAATTAA
____________________________________________________________
consensus AATCAGAAAAATCTAGAAGAGAGACTTGAAGCAACAATTGCAATTAA
. : . : . : . : . : . :
JMFN034J01+ AGTAGATAGCTCTTTGCATGGTTCTGTNTGCTTCATTCAGGGAAATAGGAATCAAAGGAA
JMFN006H07+ TAGATAGCTCTTTGCATGGTTCTGTNTGCTTCATTCAGGGAAATAGGAATCAAAGGAA
JMCP010A08+ AGTAGATAGCTCTTTGCATGGTTCTGTTTGCTTCATTCAGGGAAGTAGGAATCAAAGGAA
rJMSF038D08- AGTAGATAGCTCTTTGCATGGTTCTGTTTGCTTCATTCAGGGAAATAGGAATCAAAGGAA
____________________________________________________________
consensus AGTAGATAGCTCTTTGCATGGTTCTGTTTGCTTCATTCAGGGAAATAGGAATCAAAGGAA
. : . : . : . : . : . :
JMFN034J01+ CATGACTAATGGCAATAATGAAAATCTCAAACTTCTAAAATTGAAGCCCATTTTCCCTGG
JMFN006H07+ CATGACTAATGGCAATAATGAAAATCTCAAACTTCTAAAATTGAAGCCCATTTTCCCTGG
JMCP010A08+ CATGACTAATGGCAATAATGAAAAagTCAAACTTCattttTTGAAGCCCATTTTCCCTGG
rJMSF038D08- CATGACTAATGGCAATAATGAAAATCTCAAACTTCTAAAATTGAAGCCCATTTTCCCTGG
____________________________________________________________
consensus CATGACTAATGGCAATAATGAAAATCTCAAACTTCTAAAATTGAAGCCCATTTTCCCTGG
. : . : . : . : . : . :
JMFN034J01+ CAGCATCAGCAATAGCTTCAATACGTCCATGGTAAGGGTATCCACCACGATCAAATGCCA
JMFN006H07+ CAGCATCAGCAATAGCTTCAATACGTCCATGGTAAGGGTATCCACCACGATCAAATGCCA
JMCP010A08+ CAGCATCAGCAATAGCTTCAATACGTCCATGGTAAGGGTATCCACCACGATCtttTGCCA
rJMSF038D08- CAGCATCAGCAATAGCTTCAATACGTCCATGGTAAGGGTATCCACCACGATCAAATGCCA
____________________________________________________________
consensus CAGCATCAGCAATAGCTTCAATACGTCCATGGTAAGGGTATCCACCACGATCAAATGCCA
. : . : . : . : . : . :
JMFN034J01+ CCTTGCTGATCCCTTTTTCCAGACAGGATTTTGCTATAACTTCACCCACTTTCCTTGCCA
JMFN006H07+ CCTTGCTGATCCCTTTTTCCAGACAGGATTTTGCTATAACTTCACCCACTTTCCTTGCCA
JMCP010A08+ CCTTGCTGATCCCTTTTTCCAGACAGGATTTTGCTATAACTTCACCCACTTTCCTTGCgt
rJMSF038D08- CCTTGCTGATCCCTTTTTCCAGACAGGATTTTGCTATAACTTCACCCACTTTCCTTGCCA
____________________________________________________________
consensus CCTTGCTGATCCCTTTTTCCAGACAGGATTTTGCTATAACTTCACCCACTTTCCTTGCCA
. : . : . : . : . : . :
JMFN034J01+ CTTCAATGGTGGGTCCAGAACTGTAGTTGAATTCCTCTGAGATGGCTTTCTGCATTGTTG
JMFN006H07+ CTTCAATGGTGGGTCCAGAACTGTAGTTGAATTCCTCTGAGATGGCTTTCTGCATTGTTG
JMCP010A08+ gTTgttTGGTGGGTCCAGAtCTGgtcTTcAATTggagacAGATGGCTTagacgATTGTTG
rJMSF038D08- CTTCAATGGTGGGTCCAGAACTGTAGTTGAATTCCTCTGAGATGGCTTTCTGCATTGTTG
____________________________________________________________
consensus CTTCAATGGTGGGTCCAGAACTGTAGTTGAATTCCTCTGAGATGGCTTTCTGCATTGTTG
. : . : . : . : . : . :
JMFN034J01+ AAACAGCTGCCAGAGTATGCATTTTAGTGTCATCAATGACTTGAACATAGAGATGTTTGT
JMFN006H07+ AAACAGCTGCCAGAGTATGCATTTTAGTGTCATCAATGACTTGAACATAGAGATGTTTGT
JMCP010A08+ AAAgtcCTGCCAGAGTATGCAaTTTAGTcTCATgttTGACTTGAACtatGAGATGTTTGT
rJMSF038D08- AAACAGCTGCCAGAGTATGCATTTTAGTGTCATCAATGACTTGAACATAGAGATGTTTGT
____________________________________________________________
consensus AAACAGCTGCCAGAGTATGCATTTTAGTGTCATCAATGACTTGAACATAGAGATGTTTGT
. : . : . : . : . : . :
JMFN034J01+ TAGAGCGGAATACAGACAATCTCGGTCTTTCTGGAGTCCCTTCAACCTTCTTGCGGATAC
JMFN006H07+ TAGAGCGGAATACAGACAATCTCGGTCTTTCTGGAGTCCCTTCAACCTTCTTGCGGATAC
JMCP010A08+ TAGAGCGGAATACAGAgttaCTCGGTCTTagTGGAGTCCCTTCAACCTTCTTGCGGATAC
rJMSF038D08- TAGAGCGGAATACAGACAATCTCGGTCTTTCTGGAGTCCCTTCAACCTTCTTGCGGATAC
____________________________________________________________
consensus TAGAGCGGAATACAGACAATCTCGGTCTTTCTGGAGTCCCTTCAACCTTCTTGCGGATAC
. : . : . : . : . : . :
JMFN034J01+ GAGAATGGCGCGCAATCCGGTCCTCCCGTCTGGTTCTGGACTCGGCTTGAACAATCAGAG
JMFN006H07+ GAGAATGGCGCGCAATCCGGTCCTCCCGTCTGGTTCTGGACTCGGCTTGAACAATCAGAG
JMCP010A08+ GAGAATGGCGCGgttagCGGTCCTCCCGTCTGGTTCTGGACTCGGCTTGAtgttTgAGAG
rJMSF038D08- GAGAATGGCGCGCAATCCGGTCCTCCCGTCTGGTTCTGGACTCGGCTTGAACAATCAGAG
____________________________________________________________
consensus GAGAATGGCGCGCAATCCGGTCCTCCCGTCTGGTTCTGGACTCGGCTTGAACAATCAGAG
. : . : . : . : . : . :
JMFN034J01+ GCCTTGTCGAAGTGGGCACTCTGAGCTTGAAAGAGAACACATTACAAAGCGGTAGCTGTT
JMFN006H07+ GCCTTGTCGAAGTGGGCACTCTGAGCTTGAAAGAGAACACATTACAAAGCGGTAGCTGTT
JMCP010A08+ GCCTTGTCctAGTGGG
rJMSF038D08- GCCTTGTCGAAGTGGGCACTCTGAGCTTGAAAGAGAACACATTACAAAGCGGTAGCTGTT
____________________________________________________________
consensus GCCTTGTCGAAGTGGGCACTCTGAGCTTGAAAGAGAACACATTACAAAGCGGTAGCTGTT
. : . : . : . : . : . :
JMFN034J01+ GCTTACATCCAACGGAGGAAGAAGAAGCGTGCAGAAAAGAGGAATGAATTAAGTTACAAG
JMFN006H07+ GCTTACATCCAACGGAGGAAGAAGAAGCGTGCAGAAAAGAGGAATGAATTAAGTTACAAG
rJMSF038D08- GCTTACATCCAACGGAGGAAGAAGAAGCGTGCAGAAAAGAGGAATGAATTAAGTTACAAG
____________________________________________________________
consensus GCTTACATCCAACGGAGGAAGAAGAAGCGTGCAGAAAAGAGGAATGAATTAAGTTACAAG
. : . : . : . : . : . :
JMFN034J01+ ACATTTCTAAGCACC
JMFN006H07+ ACATTTCTAAGCACCTTCAGAGTTTC
rJMSF038D08- ACATTTCTAAGCACCTTCAGAGTTTCTCGGCGTCTTTCTCGTATAGAAACCCCNGTGATG
____________________________________________________________
consensus ACATTTCTAAGCACCTTCAGAGTTTCTCGGCGTCTTTCTCGTATAGAAACCCCNGTGATG