Contig 004271:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFN040P06Sequence612004271 (6)ref|XP_004251160.1|2e-109PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper
JMSF001N07Sequence235000623 (7)ref|XP_006340213.1|1e-06PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l754004271 (6)ref|XP_009799931.1|2e-106PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve
JMSF004D03Sequence337000623 (7)ref|XP_004251160.1|4e-31PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper181004271 (6)ref|XP_004145754.1|3e-17PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l
JMSF008G13Sequence423000623 (7)ref|XP_004251160.1|2e-49PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper771004271 (6)ref|XP_009799931.1|2e-106PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve
JMSF012N23Sequence233000623 (7)ref|XP_006340213.1|1e-06PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l766004271 (6)ref|XP_009799931.1|1e-109PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve
JMSF025C17Sequence661000623 (7)ref|XP_004251160.1|6e-102PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper772004271 (6)ref|XP_009799931.1|1e-107PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve

Alignment

This contig is upended


. : . : . : . : . : . :
JMFN040P06- AGATATTGCCATTGTAACAGGAGCTGAGTACCAGGCTAGT
                      ____________________________________________________________
consensus AGATATTGCCATTGTAACAGGAGCTGAGTACCAGGCTAGT
 
. : . : . : . : . : . :
JMFN040P06- GATTTGGGACTTCTTGTTGAGAATACCCAAGTTGAAGCACTAGGTATTGCCAGAAAGGTG
                      ____________________________________________________________
consensus GATTTGGGACTTCTTGTTGAGAATACCCAAGTTGAAGCACTAGGTATTGCCAGAAAGGTG
 
. : . : . : . : . : . :
JMFN040P06- ACAATTACCAAGGACTCAACAACCATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
rJMSF001N07+ ATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
rJMSF008G13+ CCATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
rJMSF012N23+ GACTCAACAACCATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
rJMSF025C17+ GACTCAACAACCATTATTGCTGATGCTGCATCGAAAGGATGAGATACA
                      ____________________________________________________________
consensus ACAATTACCAAGGACTCAACAACCATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
 
. : . : . : . : . : . :
JMFN040P06- GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
rJMSF001N07+ GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
rJMSF008G13+ GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
rJMSF012N23+ GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
rJMSF025C17+ GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
                      ____________________________________________________________
consensus GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
 
. : . : . : . : . : . :
JMFN040P06- GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
rJMSF001N07+ GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
rJMSF008G13+ GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
rJMSF012N23+ GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
rJMSF025C17+ GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
                      ____________________________________________________________
consensus GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
 
. : . : . : . : . : . :
JMFN040P06- TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
rJMSF001N07+ TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
rJMSF008G13+ TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
rJMSF012N23+ TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
rJMSF025C17+ TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
                      ____________________________________________________________
consensus TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
 
. : . : . : . : . : . :
JMFN040P06- TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
rJMSF001N07+ TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
rJMSF008G13+ TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
rJMSF012N23+ TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
rJMSF025C17+ TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
                      ____________________________________________________________
consensus TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
 
. : . : . : . : . : . :
JMFN040P06- GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
rJMSF001N07+ GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
rJMSF008G13+ GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
rJMSF012N23+ GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
rJMSF025C17+ GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
                      ____________________________________________________________
consensus GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
 
. : . : . : . : . : . :
JMFN040P06- TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
rJMSF001N07+ TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
rJMSF008G13+ TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
rJMSF012N23+ TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
rJMSF025C17+ TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
                      ____________________________________________________________
consensus TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
 
. : . : . : . : . : . :
JMFN040P06- AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
rJMSF001N07+ AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
rJMSF004D03+ AAAAGGTGAGAGACCGTGATTGNGAGGTCGGATACAATGCAAT
rJMSF008G13+ AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
rJMSF012N23+ AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
rJMSF025C17+ AGGGGAGGTTGCTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
                      ____________________________________________________________
consensus AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
 
. : . : . : . : . : . :
JMFN040P06- GACCGATAGCTATGAGAACCTCGTGGAAGCTGG
rJMSF001N07+ GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
rJMSF004D03+ GACCGATAGCTATGAGAACCTCGTGGAAGCNGGAGTCATCGATCCAGCCAAGGTGACAAG
rJMSF008G13+ GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
rJMSF012N23+ GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
rJMSF025C17+ GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
                      ____________________________________________________________
consensus GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
 
. : . : . : . : . : . :
rJMSF001N07+ ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
rJMSF004D03+ ATGTGCTCTGCAGAATTGCTGCGTCAGTGGCAGGAATGGTCCTCACCACACAAGCCATTG
rJMSF008G13+ ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
rJMSF012N23+ ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
rJMSF025C17+ ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
                      ____________________________________________________________
consensus ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
 
. : . : . : . : . : . :
rJMSF001N07+ TCGTCGAGAAACCAAAGCCTAAGACACCTGCCCCTGCTGCTCCTCAAGGTCTTACCGTGT
rJMSF004D03+ TCGTCGAGAAACCAAAGC
rJMSF008G13+ TCGTCGAGAAACCAAAGCCTAAGACACCTGC
rJMSF012N23+ TCGTCGAGAAACCAAAGCCTAAGACACCTGCCCCTGCTGCTCCTCAAGGTCTTACCGTGT
rJMSF025C17+ TCGTCGAGAAACCAAAGCCTAAGACACCTGCCCCTGCTGCTCCTCAAGGTCTTACCGTGT
                      ____________________________________________________________
consensus TCGTCGAGAAACCAAAGCCTAAGACACCTGCCCCTGCTGCTCCTCAAGGTCTTACCGTGT
 
. : . : . : . : . : . :
rJMSF001N07+ GATCAATAGATTCAGAGCATGTAGTATGAACTTTTGGAGTAGTTAAGCTTCACCATTGTA
rJMSF012N23+ GATCAATAGATTCAGAGCATGTAGTATGAACTTTTGGAGTAGTTAAGCTTCACCATTGTA
rJMSF025C17+ GATCAATAGATTCAGAGCATGTAGTATGAACTTTTGGAGTAGTTAAGCTTCACCATTGTA
                      ____________________________________________________________
consensus GATCAATAGATTCAGAGCATGTAGTATGAACTTTTGGAGTAGTTAAGCTTCACCATTGTA
 
. : . : . : . : . : . :
rJMSF001N07+ GGGAAATGAGACTTGAGTAATATAACAAAGAGCAAAAAATAACTTTTTGGTCAGCTCTTA
rJMSF012N23+ GGGAAATGAGACTTGAGTAATATAACAAAGAGCAAAAAATAACTTTTTGGTCAGCTCTTA
rJMSF025C17+ GGGAAATGAGACTTGAGTAATATAACAAAGAGCAAAAAATAACTTTTTGGTCAGCTCTTA
                      ____________________________________________________________
consensus GGGAAATGAGACTTGAGTAATATAACAAAGAGCAAAAAATAACTTTTTGGTCAGCTCTTA