clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFN040P06 | Sequence | 612 | 004271 (6) | ref|XP_004251160.1| | 2e-109 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | |||||
JMSF001N07 | Sequence | 235 | 000623 (7) | ref|XP_006340213.1| | 1e-06 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 754 | 004271 (6) | ref|XP_009799931.1| | 2e-106 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve |
JMSF004D03 | Sequence | 337 | 000623 (7) | ref|XP_004251160.1| | 4e-31 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | 181 | 004271 (6) | ref|XP_004145754.1| | 3e-17 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l |
JMSF008G13 | Sequence | 423 | 000623 (7) | ref|XP_004251160.1| | 2e-49 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | 771 | 004271 (6) | ref|XP_009799931.1| | 2e-106 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve |
JMSF012N23 | Sequence | 233 | 000623 (7) | ref|XP_006340213.1| | 1e-06 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha, chloroplastic-l | 766 | 004271 (6) | ref|XP_009799931.1| | 1e-109 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve |
JMSF025C17 | Sequence | 661 | 000623 (7) | ref|XP_004251160.1| | 6e-102 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Solanum lycoper | 772 | 004271 (6) | ref|XP_009799931.1| | 1e-107 | PREDICTED: ruBisCO large subunit-binding protein subunit alpha [Nicotiana sylve |
This contig is upended
. : . : . : . : . : . :
JMFN040P06- AGATATTGCCATTGTAACAGGAGCTGAGTACCAGGCTAGT
____________________________________________________________
consensus AGATATTGCCATTGTAACAGGAGCTGAGTACCAGGCTAGT
. : . : . : . : . : . :
JMFN040P06- GATTTGGGACTTCTTGTTGAGAATACCCAAGTTGAAGCACTAGGTATTGCCAGAAAGGTG
____________________________________________________________
consensus GATTTGGGACTTCTTGTTGAGAATACCCAAGTTGAAGCACTAGGTATTGCCAGAAAGGTG
. : . : . : . : . : . :
JMFN040P06- ACAATTACCAAGGACTCAACAACCATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
rJMSF001N07+ ATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
rJMSF008G13+ CCATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
rJMSF012N23+ GACTCAACAACCATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
rJMSF025C17+ GACTCAACAACCATTATTGCTGATGCTGCATCGAAAGGATGAGATACA
____________________________________________________________
consensus ACAATTACCAAGGACTCAACAACCATTATTGCTGATGCTGCATCG-AAGGATGAGATACA
. : . : . : . : . : . :
JMFN040P06- GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
rJMSF001N07+ GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
rJMSF008G13+ GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
rJMSF012N23+ GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
rJMSF025C17+ GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
____________________________________________________________
consensus GTCAAGGATTGCTCAGCTTAAAAAGGAGTTATTTGAAACTGATTCAATCTATGATTCTGA
. : . : . : . : . : . :
JMFN040P06- GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
rJMSF001N07+ GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
rJMSF008G13+ GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
rJMSF012N23+ GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
rJMSF025C17+ GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
____________________________________________________________
consensus GAAACTTGCCGAGAGAATTGCCAAATTGTCAGGTGGTGTTGCTGTGATTAAGGTTGGAGC
. : . : . : . : . : . :
JMFN040P06- TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
rJMSF001N07+ TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
rJMSF008G13+ TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
rJMSF012N23+ TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
rJMSF025C17+ TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
____________________________________________________________
consensus TGCAACAGAGGCTGAACTTGAGGACCGCAAACTGCGCATCGAGGATGCAAAGAATGCAAC
. : . : . : . : . : . :
JMFN040P06- TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
rJMSF001N07+ TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
rJMSF008G13+ TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
rJMSF012N23+ TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
rJMSF025C17+ TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
____________________________________________________________
consensus TTTTGCTGCCATTGAGGAGGGAATTGTACCTGGTGGTGGGGCTGCATTCGTTCATCTGTC
. : . : . : . : . : . :
JMFN040P06- GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
rJMSF001N07+ GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
rJMSF008G13+ GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
rJMSF012N23+ GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
rJMSF025C17+ GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
____________________________________________________________
consensus GACTTATGTTCCTGCAATCAAGGACACACTTGAAGACGCAGATGAGAAATTAGGAGCTGA
. : . : . : . : . : . :
JMFN040P06- TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
rJMSF001N07+ TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
rJMSF008G13+ TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
rJMSF012N23+ TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
rJMSF025C17+ TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
____________________________________________________________
consensus TATCGTGCAAAAGGCATTAGTTGCACCAGCATCCCTGATAGCCCAAAATGCTGGGGTTGA
. : . : . : . : . : . :
JMFN040P06- AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
rJMSF001N07+ AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
rJMSF004D03+ AAAAGGTGAGAGACCGTGATTGNGAGGTCGGATACAATGCAAT
rJMSF008G13+ AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
rJMSF012N23+ AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
rJMSF025C17+ AGGGGAGGTTGCTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
____________________________________________________________
consensus AGGGGAGGTTGTTGTTGAAAAGGTGAGAGACCGTGATTGGGAGGTCGGATACAATGCAAT
. : . : . : . : . : . :
JMFN040P06- GACCGATAGCTATGAGAACCTCGTGGAAGCTGG
rJMSF001N07+ GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
rJMSF004D03+ GACCGATAGCTATGAGAACCTCGTGGAAGCNGGAGTCATCGATCCAGCCAAGGTGACAAG
rJMSF008G13+ GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
rJMSF012N23+ GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
rJMSF025C17+ GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
____________________________________________________________
consensus GACCGATAGCTATGAGAACCTCGTGGAAGCTGGAGTCATCGATCCAGCCAAGGTGACAAG
. : . : . : . : . : . :
rJMSF001N07+ ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
rJMSF004D03+ ATGTGCTCTGCAGAATTGCTGCGTCAGTGGCAGGAATGGTCCTCACCACACAAGCCATTG
rJMSF008G13+ ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
rJMSF012N23+ ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
rJMSF025C17+ ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
____________________________________________________________
consensus ATGTGCTCTGCAGAATT-CTGCTTCAGTTGCAGGAATGGTCCTCACCACACAAGCCATTG
. : . : . : . : . : . :
rJMSF001N07+ TCGTCGAGAAACCAAAGCCTAAGACACCTGCCCCTGCTGCTCCTCAAGGTCTTACCGTGT
rJMSF004D03+ TCGTCGAGAAACCAAAGC
rJMSF008G13+ TCGTCGAGAAACCAAAGCCTAAGACACCTGC
rJMSF012N23+ TCGTCGAGAAACCAAAGCCTAAGACACCTGCCCCTGCTGCTCCTCAAGGTCTTACCGTGT
rJMSF025C17+ TCGTCGAGAAACCAAAGCCTAAGACACCTGCCCCTGCTGCTCCTCAAGGTCTTACCGTGT
____________________________________________________________
consensus TCGTCGAGAAACCAAAGCCTAAGACACCTGCCCCTGCTGCTCCTCAAGGTCTTACCGTGT
. : . : . : . : . : . :
rJMSF001N07+ GATCAATAGATTCAGAGCATGTAGTATGAACTTTTGGAGTAGTTAAGCTTCACCATTGTA
rJMSF012N23+ GATCAATAGATTCAGAGCATGTAGTATGAACTTTTGGAGTAGTTAAGCTTCACCATTGTA
rJMSF025C17+ GATCAATAGATTCAGAGCATGTAGTATGAACTTTTGGAGTAGTTAAGCTTCACCATTGTA
____________________________________________________________
consensus GATCAATAGATTCAGAGCATGTAGTATGAACTTTTGGAGTAGTTAAGCTTCACCATTGTA
. : . : . : . : . : . :
rJMSF001N07+ GGGAAATGAGACTTGAGTAATATAACAAAGAGCAAAAAATAACTTTTTGGTCAGCTCTTA
rJMSF012N23+ GGGAAATGAGACTTGAGTAATATAACAAAGAGCAAAAAATAACTTTTTGGTCAGCTCTTA
rJMSF025C17+ GGGAAATGAGACTTGAGTAATATAACAAAGAGCAAAAAATAACTTTTTGGTCAGCTCTTA
____________________________________________________________
consensus GGGAAATGAGACTTGAGTAATATAACAAAGAGCAAAAAATAACTTTTTGGTCAGCTCTTA