Contig 004219:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF013C10Sequence230009365 (8)798004219 (4)ref|XP_006357653.1|2e-34PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]
JMSF019I15Sequence548009365 (8)ref|XP_009801445.1|5e-14PREDICTED: ribosomal biogenesis protein LAS1L-like [Nicotiana sylvestris]787004219 (4)ref|XP_006357653.1|2e-34PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]
JMSF026N09Sequence667009365 (8)ref|XP_006357653.1|5e-27PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]680004219 (4)ref|XP_009626552.1|6e-41PREDICTED: pre-rRNA-processing protein las1 [Nicotiana tomentosiformis]
JMSF051G17Sequence595009365 (8)ref|XP_006357653.1|6e-27PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]724004219 (4)ref|XP_006357653.1|1e-34PREDICTED: uncharacterized protein LOC102599960 isoform X1 [Solanum tuberosum]

Alignment

This contig is upended


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rJMSF026N09+                                                              CCTCTCAT
                      ____________________________________________________________
consensus                                                                 CCTCTCAT
 
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rJMSF026N09+          GGCAACAAGCAACTGATGGCTTCATCCATAGTTCTTGCACGTCTAATGGGGAAGAACTCT
rJMSF019I15+                                                          GGGANGAACTCT
rJMSF051G17+                                                          GGGAAGAACTCT
rJMSF013C10+                                                          GGGAAGAACTCT
                      ____________________________________________________________
consensus             GGCAACAAGCAACTGATGGCTTCATCCATAGTTCTTGCACGTCTAATGGGGAAGAACTCT
 
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rJMSF026N09+          TTACTTAATAAACTTAAAACGCTCTCTTTGCTGAGCGTATTTGGTGCAGATGTTAATGAA
rJMSF019I15+          TTACTTAATAAACTTAAAACGCTCTCTTTGCTGAGCGTATTTGGTGCAGATGTTAATGAA
rJMSF051G17+          TTACTTAATAAACTTAAAACGCTCTCTTTGCTGAGCGTATTTGGTGCAGATGTTAATGAA
rJMSF013C10+          TTACTTAATAAACTTAAAACGCTCTCTTTGCTGAGCGTATTTGGTGCAGATGTTAATGAA
                      ____________________________________________________________
consensus             TTACTTAATAAACTTAAAACGCTCTCTTTGCTGAGCGTATTTGGTGCAGATGTTAATGAA
 
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rJMSF026N09+          TCAGACTCTCCTAATGTACATTCAGAAAGCTTCCTCTCCAGGCAAGAAGAATCCCTTAGT
rJMSF019I15+          TCAGACTCTCCTAATGTACATTCAGAAAGCTTCCTCTCCAGGCAAGAAGAATCCCTTAGT
rJMSF051G17+          TCAGACTCTCCTAATGTACATTCAGAAAGCTTCCTCTCCAGGCAAGAAGAATCCCTTAGT
rJMSF013C10+          TCAGACTCTCCTAATGTACATTCAGAAAGCTTCCTCTCCAGGCAAGAAGAATCCCTTAGT
                      ____________________________________________________________
consensus             TCAGACTCTCCTAATGTACATTCAGAAAGCTTCCTCTCCAGGCAAGAAGAATCCCTTAGT
 
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rJMSF026N09+          CAAGCTGGAAAGAAGCTTCAGTTGATTAAACTAAAATCAATGAAGAGCAACAAGGTAAAC
rJMSF019I15+          CAAGCTGGAAAGAAGCTTCAGTTGATTAAACTAAAATCAATGAAGAGCAACAAGGTAAAC
rJMSF051G17+          CAAGCTGGAAAGAAGCTTCAGTTGATTAAACTAAAATCAATGAAGAGCAACAAGGTAAAC
rJMSF013C10+          CAAGCTGGAAAGAAGCTTCAGTTGATTAAACTAAAATCAATGAAGAGCAACAAGGTAAAC
                      ____________________________________________________________
consensus             CAAGCTGGAAAGAAGCTTCAGTTGATTAAACTAAAATCAATGAAGAGCAACAAGGTAAAC
 
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rJMSF026N09+          AAAACTCAAAACCATGCCGGTGTTCGTAGACAATGGGTTGTCACAGATAATTGGAGACCA
rJMSF019I15+          AAAACTCAAAACCATGCCGGTGTTCGTAGACAATGGGTTGTCACAGATAATTGGAGACCA
rJMSF051G17+          AAAACTCAAAACCATGCCGGTGTTCGTAGACAATGGGTTGTCACAGATAATTGGAGACCA
rJMSF013C10+          AAAACTCAAAACCATGCCGGTGTTCGTAGACAATGGGTTGTCACAGATAATTGGAGACCA
                      ____________________________________________________________
consensus             AAAACTCAAAACCATGCCGGTGTTCGTAGACAATGGGTTGTCACAGATAATTGGAGACCA
 
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rJMSF026N09+          TGCCCTATAGGTATGATACCTCATGCTTTCAGTTCTTCAGGCCGCTTACCTATTCTTGAT
rJMSF019I15+          TGCCCTATAGGTATGATACCTCATGCTTTCAGTTCTTCAGGCCGCTTACCTATTCTTGAT
rJMSF051G17+          TGCCCTATAGGTATGATACCTCATGCTTTCAGTTCTTCAGGCCGCTTACCTATTCTTGAT
rJMSF013C10+          TGCCCTATAGGTATGATACCTCATGCTTTCAGTTCTTCAGGCCGCTTACCTATTCTTGAT
                      ____________________________________________________________
consensus             TGCCCTATAGGTATGATACCTCATGCTTTCAGTTCTTCAGGCCGCTTACCTATTCTTGAT
 
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rJMSF026N09+          TGCAATGCTAATTGCACTGAAGTTTCCAAATCATCAAATCCAAAAGAATGCCAATTATCA
rJMSF019I15+          TGCAATGCTAATTGCACTGAAGTTTCCAAATCATCAAATCCAAAAGAATGCCAATTATCA
rJMSF051G17+          TGCAATGCTAATTGCACTGAAGTTTCCAAATCATCAAATCCAAAAGAATGCCAATTATCA
rJMSF013C10+          TGCAATGCTAATTGCACTGAAGTTTCCAAATCATCAAATCCAAAAGAATGCCAATTATCA
                      ____________________________________________________________
consensus             TGCAATGCTAATTGCACTGAAGTTTCCAAATCATCAAATCCAAAAGAATGCCAATTATCA
 
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rJMSF026N09+          AATGAAAATCACAGCAAGAGGGTGGCTGAATCTGCTATTGAATGTTTAGACAATTCCCAT
rJMSF019I15+          AATGAAAATCACAGCAAGAGGGTGGCTGAATCTGCTATTGAATGTTTAGACAATTCCCAT
rJMSF051G17+          AATGAAAATCACAGCAAGAGGGTGGCTGAATCTGCTATTGAATGTTTAGACAATTCCCAT
rJMSF013C10+          AATGAAAATCACAGCAAGAGGGTGGCTGAATCTGCTATTGAATGTTTAGACAATTCCCAT
                      ____________________________________________________________
consensus             AATGAAAATCACAGCAAGAGGGTGGCTGAATCTGCTATTGAATGTTTAGACAATTCCCAT
 
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rJMSF026N09+          CATAAGAAAATGAGAGCAGAGACAGAAAGCAGCCATGAATTAGATGACACATCTGCAGCA
rJMSF019I15+          CATAAGAAAATGAGAGCAGAGACAGAAAGCAGCCATGAATTAGATGACACATCTGCAGCA
rJMSF051G17+          CATAAGAAAATGAGAGCAGAGACAGAAAGCAGCCATGAATTAGATGACACATCTGCAGCA
rJMSF013C10+          CATAAGAAAATGAGAGCAGAGACAGAAAGCAGCCATGAATTAGATGACACATCTGCAGCA
                      ____________________________________________________________
consensus             CATAAGAAAATGAGAGCAGAGACAGAAAGCAGCCATGAATTAGATGACACATCTGCAGCA
 
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rJMSF026N09+          GGTATAGAAGGATGTCTGATGATTGGTGGTGAGTGGAAGAAAGTTACTGCAGATGAGTTG
rJMSF019I15+          GGTATAGAAGGATGTCTGATGATTGGTGGTGAGTGGAAGAAAGTTACTGCAGATGAGTTG
rJMSF051G17+          GGTATAGAAGGATGTCTGATGATTGGTGGTGAGTGGAAGAAAGTTACTGCAGATGAGTTG
rJMSF013C10+          GGTATAGAAGGATGTCTGATGATTGGTGGTGAGTGGAAGAAAGTTACTGCAGATGAGTTG
                      ____________________________________________________________
consensus             GGTATAGAAGGATGTCTGATGATTGGTGGTGAGTGGAAGAAAGTTACTGCAGATGAGTTG
 
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rJMSF026N09+          CAAGCCATTGCATCATCTGTGAGGATGTTAGTTTAGCCACTCTTTTCGTCTCATTTTATT
rJMSF019I15+          CAAGCCATTGCATCATCTGTGAGGATGTTAGTTTAGCCACTCTTTTCGTCTCATTTTATT
rJMSF051G17+          CAAGCCATTGCATCATCTGTGAGGATGTTAGTTTAGCCACTCTTTTCGTCTCATTTTATT
rJMSF013C10+          CAAGCCATTGCATCATCTGTGAGGATGTTAGTTTAGCCACTCTTTTCGTCTCATTTTATT
                      ____________________________________________________________
consensus             CAAGCCATTGCATCATCTGTGAGGATGTTAGTTTAGCCACTCTTTTCGTCTCATTTTATT
 
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rJMSF026N09+          TGTTTTATTCTC                                                
rJMSF019I15+          TGTTTTATTCTCTTTAGTCTATCTTTAAAAATGAGAAATGGCAAATTTAGTCCATGAATT
rJMSF051G17+          TGTTTTATTCTCTTTAGTCTATCTTTAAAAATGAGAAATGGCAAATTTAGTCCATGAATT
rJMSF013C10+          TGTTTTATTCTCTTTAGTCTATCTTTAAAAATGAGAAATGGCAAATTTAGTCCATGAATT
                      ____________________________________________________________
consensus             TGTTTTATTCTCTTTAGTCTATCTTTAAAAATGAGAAATGGCAAATTTAGTCCATGAATT
 
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rJMSF019I15+          ATAGGAAAATAGTACTTTTTGTCCTTTAATTATACCCATTGTCACTTTTTGCAAGCTTGT
rJMSF051G17+          ATAGGAAAATAGTACTTTTTGTCCTTTAATTATACCCATTGTCACTTT            
rJMSF013C10+          ATAGGAAAATAGTACTTTTTGTCCTTTAATTATACCCATTGTCACTTTTTGCAAGCTTGT
                      ____________________________________________________________
consensus             ATAGGAAAATAGTACTTTTTGTCCTTTAATTATACCCATTGTCACTTTTTGCAAGCTTGT
 
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rJMSF019I15+          TTAATGATCTTTCCTTCCAATGTCACAC                                
rJMSF013C10+          TTAATGATCTTTCCTTCCAATGTCACACCATNCAGTGTGTGCGACTACCCGGCGATGCCT
                      ____________________________________________________________
consensus             TTAATGATCTTTCCTTCCAATGTCACACCATNCAGTGTGTGCGACTACCCGGCGATGCCT