Contig 004164:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF025J23Sequence518001798 (5)ref|XP_006362574.1|2e-15PREDICTED: putative late blight resistance protein homolog R1B-12-like [Solanum691004164 (3)ref|XP_011070823.1|2e-33PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi
JMFF031A04Sequence441001798 (5)ref|XP_006362574.1|2e-14PREDICTED: putative late blight resistance protein homolog R1B-12-like [Solanum505004164 (3)ref|XP_011070823.1|1e-11PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi
JMFF050G08Sequence593001798 (5)ref|XP_006362574.1|1e-16PREDICTED: putative late blight resistance protein homolog R1B-12-like [Solanum515004164 (3)ref|XP_011070823.1|4e-11PREDICTED: putative late blight resistance protein homolog R1B-17 [Sesamum indi

Alignment

This contig is upended


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rJMFF025J23+                                  CCATAGATTGGAAACACATTTGTGTATTGGGATCCC
                      ____________________________________________________________
consensus                                     CCATAGATTGGAAACACATTTGTGTATTGGGATCCC
 
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rJMFF025J23+          TCAACGAGCTGGAGGTCCTCAAGCTGAAAGAATCAGCAGTGAAGGGGGAGTATTGGGAAC
                      ____________________________________________________________
consensus             TCAACGAGCTGGAGGTCCTCAAGCTGAAAGAATCAGCAGTGAAGGGGGAGTATTGGGAAC
 
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rJMFF031A04+                ACACTGTTTTTAAGAGTCTCCGATTCTTAAGCATTGGGAGANCGGNCTTGGTGA
rJMFF025J23+          TAAATAACACTGTTTTTAAGAGTCTCCGATTCTTAAGCATTGGGAGAACGGACTTGGTGA
                      ____________________________________________________________
consensus             TAAATAACACTGTTTTTAAGAGTCTCCGATTCTTAAGCATTGGGAGAACGGACTTGGTGA
 
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rJMFF031A04+          AATGGACTTGTGAGAAGAGTAGTTTTCCTGCACTCAACAAGCTTTNCCTCTCACATTGCA
rJMFF025J23+          AATGGACTTGTGAGAAGAGTAGTTTTCCTGCACTCAACAAGCTTTACCTCTCACATTGCA
rJMFF050G08+                                 TTTCNTGCACTCAACAAGCTTTACCTCTCACATTGCA
                      ____________________________________________________________
consensus             AATGGACTTGTGAGAAGAGTAGTTTTCCTGCACTCAACAAGCTTTACCTCTCACATTGCA
 
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rJMFF031A04+          CATCCCTTGAGGCAGTCCCACTCGCCTTCAAGGATGTTAAAAGCCTTAAAGTTATGGAGT
rJMFF025J23+          CATCCCTTGAGGCAGTCCCACTCGCCTTCAAGGATGTTAAAAGCCTTAAAGTTATGGAGT
rJMFF050G08+          CATCCCTGAGGCCAGTCCCACTCGCCTTCAAGGATGTTAAAAGCCTTAAAGTTATGGAGT
                      ____________________________________________________________
consensus             CATCCCTTGAGGCAGTCCCACTCGCCTTCAAGGATGTTAAAAGCCTTAAAGTTATGGAGT
 
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rJMFF031A04+          TGTTCTGTACCAACAAAAAAGCTGCATGCTTCTGCAAGANCAATCCGAGAACAAAAGCAA
rJMFF025J23+          TGTTCTGTACCAACAAAAAAGCTGC-TGCTTCTGCAAGAACAATCCGAGAACAAAAGCAA
rJMFF050G08+          TGTTCTGTACCAACAAAAAAGCTGC-TGCTTCTGCAAGAACAATCCGAGAACAAAAGCAA
                      ____________________________________________________________
consensus             TGTTCTGTACCAACAAAAAAGCTGC-TGCTTCTGCAAGAACAATCCGAGAACAAAAGCAA
 
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rJMFF031A04+          GGAGATGGGTTTGATCTCTCCATTTATCNTCGTGCAGATANCNGAATTCNACAACTTTAN
rJMFF025J23+          GGAGATGGGTTTGATCTCTCCATTTATCCTCCTGCAGATAACTGAATTCAACAACTTTAA
rJMFF050G08+          GGAGATGGGTTTGATCTCTCCATTTATCCTCCTGCAGATAACTGAATTCAACAACTTTAA
                      ____________________________________________________________
consensus             GGAGATGGGTTTGATCTCTCCATTTATCCTCCTGCAGATAACTGAATTCAACAACTTTAA
 
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rJMFF031A04+          TGATGCATTTGNGNATTTNTTCCAANGAAAAGAGGTAACAAATAACATNTTCAGATGTAN
rJMFF025J23+          TGATGCATTTGCGTATTTCTTCCAATGAAAAGAGGTAACAAATAACATTTTCAGATGTAT
rJMFF050G08+          TGATGCATTTGCGTATTTCTTCCAATGAAAAGAGGTAACAAATAACATTTTCAGATGTAT
                      ____________________________________________________________
consensus             TGATGCATTTGCGTATTTCTTCCAATGAAAAGAGGTAACAAATAACATTTTCAGATGTAT
 
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rJMFF031A04+          GTTNGCTTCGATCCAAGGNTTCTTNTCATGGTTGTTGTGGCGCTTTCTCCTGNTCGTGNT
rJMFF025J23+          GTTTGCTTCGATCCAAGGCTTCTTGTCATGGTTGTTGTGGCGCTTTCT-TTGTTCGTGTT
rJMFF050G08+          GTTTGCTTCGATCCAAGGCTTCTTGTCATGGTTGTTGTGGCGCTTTCT-TTGTTCGTGTT
                      ____________________________________________________________
consensus             GTTTGCTTCGATCCAAGGCTTCTTGTCATGGTTGTTGTGGCGCTTTCT-TTGTTCGTGTT
 
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rJMFF031A04+          TTCCTNTAATTTCTTACTAAAATAAAGTCTGGCATGTATNTATATATATATATGATCATA
rJMFF025J23+          TTCCTTTAATTTCTTACTAAAATAAAGTCTGGCATGTATCTATATATATATATGATCATA
rJMFF050G08+          TTCCTTTAATTTCTTACTAAAATAAAGTCTGGCATGTATCTATATATATATATGATCATA
                      ____________________________________________________________
consensus             TTCCTTTAATTTCTTACTAAAATAAAGTCTGGCATGTATCTATATATATATATGATCATA
 
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rJMFF031A04+          CGATTTCATATGTAGATCTGGGATTCAGTTG                             
rJMFF025J23+          CGATTTCATATGTAGATCTGGGATTCAGTTGGCTGGTGTGCTTAGTTCTGAGTTTTTGTG
rJMFF050G08+          CGATTTCATATGTAGATCTGGGATTCAGTTGGCTGGTGTGCTTAGTTCTGAGTTTTTGTG
                      ____________________________________________________________
consensus             CGATTTCATATGTAGATCTGGGATTCAGTTGGCTGGTGTGCTTAGTTCTGAGTTTTTGTG
 
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rJMFF025J23+          TGAAATGTTTTTCATCATTAAACATTTGTATAACTATTTGAACTATTCTACTCGGTT   
rJMFF050G08+          TGAAATGTTTTTCATCATTAAACATTTGTATAACTATTTGAACTATTCTACTCGGTTTTT
                      ____________________________________________________________
consensus             TGAAATGTTTTTCATCATTAAACATTTGTATAACTATTTGAACTATTCTACTCGGTTTTT