Contig 003606:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS013G03Sequence620003606 (6)emb|CDP07116.1|3e-58unnamed protein product [Coffea canephora]
JMFS127G01Sequence618003606 (6)ref|XP_010253662.1|4e-77PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic
JMSF013J02Sequence486003606 (6)ref|XP_009592136.1|1e-09PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic 663004794 (6)gb|EPS62642.1|1e-101hypothetical protein M569_12144, partial [Genlisea aurea]
JMSF027L21Sequence655003606 (6)ref|XP_009592136.1|1e-79PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic 666004794 (6)gb|EPS62642.1|8e-102hypothetical protein M569_12144, partial [Genlisea aurea]
JMSF034B06Sequence689003606 (6)emb|CDP07116.1|5e-58unnamed protein product [Coffea canephora]708004794 (6)ref|XP_009797237.1|5e-122PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic-
JMSF051H22Sequence693003606 (6)ref|XP_009592136.1|8e-94PREDICTED: 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, chloroplastic 710004794 (6)gb|EPS62642.1|9e-98hypothetical protein M569_12144, partial [Genlisea aurea]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS127G01+ ATGAATGTCCGCAACCA
JMSF051H22+ GAAGAGCAACTGAAGGAGCAAAATGAATGTCCGCAACCA
                      ____________________________________________________________
consensus GAAGAGCAACTGAAGGAGCAAAATGAATGTCCGCAACCA
 
. : . : . : . : . : . :
JMFS127G01+ GAGGAATATTATAATTCTTCTGAACAAGAGAATTTTTAATTTCAAAGCATGCATCGGCTT
JMSF027L21+ TCTGAACAAGAGAATTTTTAATTTCAAAGCATGCATCGGCTT
JMSF051H22+ GAGGAATATTATAATTCTTCTGAACAAGAGAATTTTTAATTTCAAAGCATGCATCGGCTT
                      ____________________________________________________________
consensus GAGGAATATTATAATTCTTCTGAACAAGAGAATTTTTAATTTCAAAGCATGCATCGGCTT
 
. : . : . : . : . : . :
JMFS127G01+ CTTTCTTGCCTTGCACCGTTATGCGGACAATGTCAGCTCCAGTATCAGCTATTTTCATTA
JMSF027L21+ CTTTCTTGCCTTGCACCGTTATGCGGACAATGTCAGCTCCAGTATCAGCTATTTTCATTA
JMSF051H22+ CTTTCTTGCCTTGCACCGTTATGCGGACAATGTCAGCTCCAGTATCAGCTATTTTCATTA
JMFS013G03+ CAGTATCAGCTATTTTCATTA
JMSF034B06+ TCATTA
                      ____________________________________________________________
consensus CTTTCTTGCCTTGCACCGTTATGCGGACAATGTCAGCTCCAGTATCAGCTATTTTCATTA
 
. : . : . : . : . : . :
JMFS127G01+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
JMSF027L21+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
JMSF051H22+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
JMFS013G03+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTGGATTTCTTA
JMSF034B06+ CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
                      ____________________________________________________________
consensus CCTGTTCAACTGTTCCAGCAACATCCTTGGTATCTGTGGTGGTCATAGTTTGGATTCTTA
 
. : . : . : . : . : . :
JMFS127G01+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
JMSF027L21+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
JMSF051H22+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
JMFS013G03+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
JMSF034B06+ TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
                      ____________________________________________________________
consensus TAGGATGTTCGCTACCAAGGGCCACATTTCCAACCATCACAGTGCGGGTTTTTCTCCGCA
 
. : . : . : . : . : . :
JMFS127G01+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
JMSF027L21+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
JMSF051H22+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
JMFS013G03+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
JMSF034B06+ CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
                      ____________________________________________________________
consensus CAGTTTTGTGTATATGTTCACAATATTTCTGCCTAGGTACTAGCAGTGGACTCCCTTCTG
 
. : . : . : . : . : . :
JMFS127G01+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMSF027L21+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMSF051H22+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMFS013G03+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMSF034B06+ ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
JMSF013J02+ TGCGAG
                      ____________________________________________________________
consensus ATGCAGGCTGAACCTCAACAGAACTGGAATTTCTGATCACACAAACCTTGCTTCTGCGAG
 
. : . : . : . : . : . :
JMFS127G01+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCC--ATTTTTTCCAAACCCCAATC
JMSF027L21+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
JMSF051H22+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
JMFS013G03+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
JMSF034B06+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
JMSF013J02+ ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
                      ____________________________________________________________
consensus ACTTAACCCTCTGCATGTCAGAAACTCTAACAAAATCCATATTTTTTCCAAACCCCAATC
 
. : . : . : . : . : . :
JMFS127G01+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMSF027L21+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMSF051H22+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMFS013G03+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMSF034B06+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
JMSF013J02+ CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
                      ____________________________________________________________
consensus CATTTTCCCTGCCTTTCAGCCCCGCAAATGAAACAGGAACTGCTCCAGTTGCCATTCTTC
 
. : . : . : . : . : . :
JMFS127G01+ CCCAAAATGCAAATCCTCACAATTC
JMSF027L21+ CCCAAAATGCAAATCCTCACAATTC
JMSF051H22+ CCCAAAATGCAAATCCTCACAATTCT
JMFS013G03+ CCCAAAATGCAAATCCTCACAATTCTAAACCGCAAAGAAAAGCAAAACAATAAAACTATA
JMSF034B06+ CCCAAAATGCAAATCCTCACAATTCTAAACCGCAAAGAAAAGCAAAACAATAAAACTATA
JMSF013J02+ CCCAAAATGCAAATCCTCACAATTCTAAACCGCAAAGAAAAGCAAAACAATAAAACTATA
                      ____________________________________________________________
consensus CCCAAAATGCAAATCCTCACAATTCTAAACCGCAAAGAAAAGCAAAACAATAAAACTATA
 
. : . : . : . : . : . :
JMFS013G03+ ATCAATTCACAATCTCCAAAACCTCAGTTCTGTTTGGGTGTAGAAACCAAATAACAAAAG
JMSF034B06+ ATCAATTCACAATCTCCAAAACCTCAGTTCTGTTTGGGTGTAGAAACCAAATAACAAAAG
JMSF013J02+ ATCAATTCACAATCTCCAAAACCTCAGTTCTGTTTGGGTGTAGAAACCAAATAACAAAAG
                      ____________________________________________________________
consensus ATCAATTCACAATCTCCAAAACCTCAGTTCTGTTTGGGTGTAGAAACCAAATAACAAAAG
 
. : . : . : . : . : . :
JMFS013G03+ CAGCCAAAGAATCGATCTTTGAACACAATCAAACTGTTCTCGATTGCATTCCGGACAAAC
JMSF034B06+ CAGCCAAAGAATCGATCTTTGAACACAATCAAACTGTTCTCGATTGCATTCCGGACAAAC
JMSF013J02+ CAGCCAAAGAATCGATCTTTGAACACAATCAAACTGTTCTCGATTGCATTCCGGACAAAC
                      ____________________________________________________________
consensus CAGCCAAAGAATCGATCTTTGAACACAATCAAACTGTTCTCGATTGCATTCCGGACAAAC
 
. : . : . : . : . : . :
JMFS013G03+ CAATACCCAATCAAGAACAGAAATTCGCTCAGCGAAAGCTTGGTA
JMSF034B06+ CAATACCCAATCAAGAACAGAAATTCGCTCAGCGAAAGCTTGGTAACACTGCACTTGCCT
JMSF013J02+ CAATACCCAATCAAGAACAGAAATTCGCTCAGCGAAAGCTTGGTAACACTGCACTTGCCT
                      ____________________________________________________________
consensus CAATACCCAATCAAGAACAGAAATTCGCTCAGCGAAAGCTTGGTAACACTGCACTTGCCT
 
. : . : . : . : . : . :
JMSF034B06+ TTAATCACAAAGGTGGGTAAAAGGATTCAAGAGGACGGAATTTGAAAGGGCCGTGGAAGA
JMSF013J02+ TTAATCACAAAGGTGGGTAAAAGGATTCAAGAGGACGGAATTTGAAAGGGCCGTGGAAGA
                      ____________________________________________________________
consensus TTAATCACAAAGGTGGGTAAAAGGATTCAAGAGGACGGAATTTGAAAGGGCCGTGGAAGA
 
. : . : . : . : . : . :
JMSF034B06+ AAGTTTTTGTTTCGCAAAAAAC
JMSF013J02+ AAGTTTTTGTTTCGCAAAAAACAAGGTAAAAATGGGAAATTGGAGTGTTAAATGCACACC
                      ____________________________________________________________
consensus AAGTTTTTGTTTCGCAAAAAACAAGGTAAAAATGGGAAATTGGAGTGTTAAATGCACACC