| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFN040O18 | Sequence | 627 | 003351 (7) | ref|XP_009793502.1| | 4e-110 | PREDICTED: 26S protease regulatory subunit 6B homolog [Nicotiana sylvestris] | |||||
| JMSF012C14 | Sequence | 319 | 003351 (7) | ref|XP_009793502.1| | 1e-27 | PREDICTED: 26S protease regulatory subunit 6B homolog [Nicotiana sylvestris] | 755 | 003351 (7) | emb|CBI15803.3| | 1e-142 | unnamed protein product [Vitis vinifera] |
| JMSF035A13 | Sequence | 656 | 003351 (7) | ref|XP_009793502.1| | 1e-118 | PREDICTED: 26S protease regulatory subunit 6B homolog [Nicotiana sylvestris] | 743 | 003351 (7) | emb|CBI15803.3| | 7e-151 | unnamed protein product [Vitis vinifera] |
| JMSF052J07 | Sequence | 687 | 003351 (7) | ref|XP_009793502.1| | 1e-126 | PREDICTED: 26S protease regulatory subunit 6B homolog [Nicotiana sylvestris] | 941 | 003351 (7) | emb|CBI15803.3| | 0.0 | unnamed protein product [Vitis vinifera] |
This contig is upended
. : . : . : . : . : . :
rJMSF012C14- A
____________________________________________________________
consensus A
. : . : . : . : . : . :
rJMSF012C14- AATTTAAATCCATCTGCTGCAGCATTGAACACACAGCAAAAGTTAAGAGACTGTTATACT
____________________________________________________________
consensus AATTTAAATCCATCTGCTGCAGCATTGAACACACAGCAAAAGTTAAGAGACTGTTATACT
. : . : . : . : . : . :
rJMSF012C14- TACTACATTGAAAACAAGTTAATTTTGTTCATGTTTCGCAGCTATTTCTGCATTTTACTT
rJMSF035A13- TTTTACTT
rJMSF052J07- TTTTACTT
____________________________________________________________
consensus TACTACATTGAAAACAAGTTAATTTTGTTCATGTTTCGCAGCTATTTCTGCATTTTACTT
. : . : . : . : . : . :
rJMSF012C14- GTAGAATTCAAAGTCAGTATCAGGCTTCTTAACATTTGTCCTGTACCCCTTCTCGAAGTC
rJMSF035A13- GTAGAATTCAAAGTCAGTATCAGGCTTCTTAACATTTGTCCTGTACCCCTTCTCGAAGTC
rJMSF052J07- GTAGAATTCAAAGTCAGTATCAGGCTTCTTAACATTTGTCCTGTACCCCTTCTCGAAGTC
____________________________________________________________
consensus GTAGAATTCAAAGTCAGTATCAGGCTTCTTAACATTTGTCCTGTACCCCTTCTCGAAGTC
. : . : . : . : . : . :
rJMSF012C14- CTTGGGGAGAATGACGTATCGGTTCTTTCGTACTGCATGCATTCCTGCTTCTTGACAAAT
rJMSF035A13- CTTGGGGAGAATGACGTATCGGTTCTTTCGTACTGCATGCATTCCTGCTTCTTGACAAAT
rJMSF052J07- CTTGGGGAGAATGACGTATCGGTTCTTTCGTACTGCATGCATTCCTGCTTCTTGACAAAT
____________________________________________________________
consensus CTTGGGGAGAATGACGTATCGGTTCTTTCGTACTGCATGCATTCCTGCTTCTTGACAAAT
. : . : . : . : . : . :
rJMSF012C14- CGCAGCAATCTCAGCAGCGCTAATCTTATCTGGCCGAGAAACATAGTCCTCCAAGTCTAC
rJMSF035A13- CGCAGCAATCTCAGCAGCGCTAATCTTATCTGGCCGAGAAACATAGTCCTCCAAGTCTAC
rJMSF052J07- CGCAGCAATCTCAGCAGCGCTAATCTTATCTGGCCGAGAAACATAGTCCTCCAAGTCTAC
____________________________________________________________
consensus CGCAGCAATCTCAGCAGCGCTAATCTTATCTGGCCGAGAAACATAGTCCTCCAAGTCTAC
. : . : . : . : . : . :
rJMSF012C14- CTCATCGCCTAAATTCATTTTTGCAGTACACACCTGGAACACAAGCCTCTTTTGACGTCT
rJMSF035A13- CTCATCGCCTAAATTCATTTTTGCAGTACACACCTGGAACACAAGCCTCTTTTGACGTCT
rJMSF052J07- CTCATCGCCTAAATTCATTTTTGCAGTACACACCTGGAACACAAGCCTCTTTTGACGTCT
____________________________________________________________
consensus CTCATCGCCTAAATTCATTTTTGCAGTACACACCTGGAACACAAGCCTCTTTTGACGTCT
. : . : . : . : . : . :
rJMSF012C14- ATCTGGCAATGGAAATTCAATCTTTCGGTCAAGCCTTCCAGGACGCAAAAGAGCAGGGTC
rJMSF035A13- ATCTGGCAATGGAAATTCAATCTTTCGGTCAAGCCTTCCAGGACGCAAAAGAGCAGGGTC
rJMSF052J07- ATCTGGCAATGGAAATTCAATCTTTCGGTCAAGCCTTCCAGGACGCAAAAGAGCAGGGTC
____________________________________________________________
consensus ATCTGGCAATGGAAATTCAATCTTTCGGTCAAGCCTTCCAGGACGCAAAAGAGCAGGGTC
. : . : . : . : . : . :
rJMSF012C14- CAATGTATCTGCTCGATTAGTTGCCATTATAACTTTCACATTAACTGTCTGGTCAAACCC
rJMSF035A13- CAATGTATCTGCTCGATTAGTTGCCATTATAACTTTCACATTAACTGTCTGGTCAAACCC
rJMSF052J07- CAATGTATCTGCTCGATTAGTTGCCATTATAACTTTCACATTAACTGTCTGGTCAAACCC
____________________________________________________________
consensus CAATGTATCTGCTCGATTAGTTGCCATTATAACTTTCACATTAACTGTCTGGTCAAACCC
. : . : . : . : . : . :
rJMSF012C14- ATCCATCTGATTTAGTAACTCCATTAGAATACGCTGAACTTCTCTATCAGCTCCGGTCTG
rJMSF035A13- ATCCATCTGATTTAGTAACTCCATTAGAATACGCTGAACTTCTCTATCAGCTCCGGTCTG
rJMSF052J07- ATCCATCTGATTTAGTAACTCCATTAGAATACGCTGAACTTCTCTATCAGCTCCGGTCTG
____________________________________________________________
consensus ATCCATCTGATTTAGTAACTCCATTAGAATACGCTGAACTTCTCTATCAGCTCCGGTCTG
. : . : . : . : . : . :
rJMSF012C14- AGCATCAAACCTAGCAGTGGCAATTGCATCTACCTCATCGATAAAAATGATTGCTGGGGC
rJMSF035A13- AGCATCAAACCTAGCAGTGGCAATTGCATCTACCTCATCGATAAAAATGATTGCTGGGGC
rJMSF052J07- AGCATCAAACCTAGCAGTGGCAATTGCATCTACCTCATCGATAAAAATGATTGCTGGGGC
____________________________________________________________
consensus AGCATCAAACCTAGCAGTGGCAATTGCATCTACCTCATCGATAAAAATGATTGCTGGGGC
. : . : . : . : . : . :
rJMSF012C14- ATTTTCTTTGGCAAGGCGGAAAACATCACGAACCATACGAGGACCCTCACCCAAGTACTT
rJMSF035A13- ATTTTCTTTGGCAAGGCGGAAAACATCACGAACCATACGAGGACCCTCACCCAAGTACTT
rJMSF052J07- ATTTTCTTTGGCAAGGCGGAAAACATCACGAACCATACGAGGACCCTCACCCAAGTACTT
____________________________________________________________
consensus ATTTTCTTTGGCAAGGCGGAAAACATCACGAACCATACGAGGACCCTCACCCAAGTACTT
. : . : . : . : . : . :
rJMSF012C14- CTGTACAAATTCTGAGCCCACAACCCTTATAAAAGCTGCAGTTGTATGATTAGCAACAGC
rJMSF035A13- CTGTACAAATTCTGAGCCCACAACCCTTATAAAAGCTGCAGTTGTATGATTAGCAACAGC
rJMSF052J07- CTGTACAAATTCTGAGCCCACAACCCTTATAAAAGCTGCAGTTGTATGATTAGCAACAGC
____________________________________________________________
consensus CTGTACAAATTCTGAGCCCACAACCCTTATAAAAGCTGCAGTTGTATGATTAGCAACAGC
. : . : . : . : . : . :
rJMSF012C14- CTT
rJMSF035A13- CTT
rJMSF052J07- CTTAGCAAGCATGGTTTTTCCAGTACCTGGTGGACCATAGAGCAAGACACCACGGGGAGG
JMSF052J07+ ACCATAGAGCAAGACACCACGGGGAGG
____________________________________________________________
consensus CTTAGCAAGCATGGTTTTTCCAGTACCTGGTGGACCATAGAGCAAGACACCACGGGGAGG
. : . : . : . : . : . :
rJMSF052J07- ATCTATACCAATTTGCTTGTACAGTTCATGGTGAGTCAAAGGCAACTCCACTGCTTCACG
JMSF035A13+ TCATGGTGAGTCAAAGGCAACTCCACTGCTTCACG
JMSF052J07+ ATCTATACCAATTTGCTTGTACAGTTCATGGTGAGTCAAAGGCAACTCCACTGCTTCACG
JMFN040O18+ AGTCAAAGGCAACTCCACTGCTTCACG
____________________________________________________________
consensus ATCTATACCAATTTGCTTGTACAGTTCATGGTGAGTCAAAGGCAACTCCACTGCTTCACG
. : . : . : . : . : . :
rJMSF052J07- TATTTCCTGCTTCTGAATGTCACATCCCCCAATATCATTGTAGGTAACATCCGGCTTTTC
JMSF035A13+ TATTTCCTGCTTCTGAATGTCACATCCCCCAATATCATTGTAGGTAACATCCGGCTTTTC
JMSF052J07+ TATTTCCTGCTTCTGAATGTCACATCCCCCAATATCATTGTAGGTAACATCCGGCTTTTC
JMFN040O18+ TATTTCCTGCTTCTGAATGTCACATCCCCCAATATCATTGTAGGTAACATCCGGCTTTTC
____________________________________________________________
consensus TATTTCCTGCTTCTGAATGTCACATCCCCCAATATCATTGTAGGTAACATCCGGCTTTTC
. : . : . : . : . : . :
rJMSF052J07- TGATTGACTTAGCAGCGAAATACTAGAGTCCGCCTCGGG
JMSF035A13+ TGATTGACTTAGCAGCGAAATACTAGAGTCCGCCTCGGGAGGCAACACGTCGACGAGGGC
JMSF052J07+ TGATTGACTTAGCAGCGAAATACTAGAGTCCGCCTCGGGAGGCAACACGTCGACGAGGGC
JMFN040O18+ TGATTGACTTAGCAGAGAAATACTAGAGTCCGCCTCGGGAGGCAACACGTCGACGAGGGC
____________________________________________________________
consensus TGATTGACTTAGCAGCGAAATACTAGAGTCCGCCTCGGGAGGCAACACGTCGACGAGGGC
. : . : . : . : . : . :
JMSF035A13+ GTTGGAGTGGCGATGAAGCGCGACGGAAGCAGAGGGTTTGAGAAGCTCCCTGTTAATGGT
JMSF052J07+ GTTGGAGTGGCGATGAAGCGCGACGGAAGCAGAGGGTTTGAGAAGCTCCCTGTTAATGGT
JMFN040O18+ GTTGGAGTGGCGATGAAGCGCGACGGAAGCAGAGGGTTTGAGAAGCTCCCTGTTAATGGT
____________________________________________________________
consensus GTTGGAGTGGCGATGAAGCGCGACGGAAGCAGAGGGTTTGAGAAGCTCCCTGTTAATGGT
. : . : . : . : . : . :
JMSF035A13+ GCTGAGAATCCGAACGTAGTAATTGGAACCAGTGGTGGAGCCGACGATAGAGTTGTTCTG
JMSF052J07+ GCTGAGAATCCGAACGTAGTAATTGGAACCAGTGGTGGAGCCGACGATAGAGTTGTTCTG
JMFN040O18+ GCTGAGAATCCGAACGTAGTAATTGGAACCAGTGGTGGAGCCGACGATAGAGTTGTTCTG
____________________________________________________________
consensus GCTGAGAATCCGAACGTAGTAATTGGAACCAGTGGTGGAGCCGACGATAGAGTTGTTCTG
. : . : . : . : . : . :
JMSF035A13+ GTCGATCATCTCCATAAACTGCCCAATTACAAGCGGCACCGACTGGATCCGCTTAACCTC
JMSF052J07+ GTCGATCATCTCCATAAACTGCCCAATTACAAGCGGCACCGACTGGATCCGCTTAACCTC
JMFN040O18+ GTCGATCATCTCCATAAACTGCCCAATTACAAGCGGCACCGACTGGATCCGCTTAACCTC
____________________________________________________________
consensus GTCGATCATCTCCATAAACTGCCCAATTACAAGCGGCACCGACTGGATCCGCTTAACCTC
. : . : . : . : . : . :
JMSF035A13+ CTCCTGCGCTCGGAGGTGCTCTCGCCTCAGGTTCTTCAGTTCATCCTTGACGTATTCCTC
JMSF052J07+ CTCCTGCGCTCGGAGGTGCTCTCGCCTCAGGTTCTTCAGTTCATCCTTGACGTATTCCTC
JMSF012C14+ GCTCGGAGGTGCTCTCGCCTCAGGTTCTTCAGTTCATCCTTGACGTATTCCTC
JMFN040O18+ CTCCTGCGCTCGGAGGTGCTCTCGCCTCAGGTTCTTCAGTTCATCCTTGACGTATTCCTC
____________________________________________________________
consensus CTCCTGCGCTCGGAGGTGCTCTCGCCTCAGGTTCTTCAGTTCATCCTTGACGTATTCCTC
. : . : . : . : . : . :
JMSF035A13+ TTGTATCTCGATGAATTCCAACTGTCTCTGCAGCGATTTCAGCCGCGCGTAGAGATCGTC
JMSF052J07+ TTGTATCTCGATGAATTCCAACTGTCTCTGCAGCGATTTCAGCCGCGCGTAGAGATCGTC
JMSF012C14+ TTGTATCTCGATGAATTCCAACTGTCTCTGCAGCGATTTCAGCCGCGCGTAGAGATCGTC
JMFN040O18+ TTGTATCTCGATGAATTCCAACTGTCTCTGCAGCGATTTCAGCCGCGCGTAGAGATCGTC
____________________________________________________________
consensus TTGTATCTCGATGAATTCCAACTGTCTCTGCAGCGATTTCAGCCGCGCGTAGAGATCGTC
. : . : . : . : . : . :
JMSF035A13+ CTCGGCGTCGTACGACACGTCCTGAGCGGACGCGTCGGTTCGGGTCGCCGGAACCTCAAA
JMSF052J07+ CTCGGCGTCGTACGACACGTCCTGAGCGGACGCGTCGGTTCGGGTCGCCGGAACCTCAAA
JMSF012C14+ CTCGGCGTCG
JMFN040O18+ CTCGGCGTCGTACGACACGTCCTGAGCGGACGCGTCGGTTCGGGTCGCCGGAACCTCAAA
____________________________________________________________
consensus CTCGGCGTCGTACGACACGTCCTGAGCGGACGCGTCGGTTCGGGTCGCCGGAACCTCAAA
. : . : . : . : . : . :
JMSF035A13+ AGAAGGCTTGGGAGTAGGGTTAGGATCCAGAACCATAGGCGTCGCCATTGTTGGAGCTCC
JMSF052J07+ GGAAGGCTTGGGAGTAGGGTTAGGATCCAGAACCATAGGCGTCGCCATTGTTGGAGCTCC
JMFN040O18+ AGAAGGCTTGGGAGTAGGGTTAGGATCCAGAACCATAGGCGTCGCCATTGTTGGAGCTCC
____________________________________________________________
consensus AGAAGGCTTGGGAGTAGGGTTAGGATCCAGAACCATAGGCGTCGCCATTGTTGGAGCTCC
. : . : . : . : . : . :
JMSF035A13+ TTATCGGCTTGGGGCAGAAGAGTCGGGAGCTTGCAAAGAAGACAATGGAGTAGGAAA
JMSF052J07+ TTATCGGCTTGGGGCAGAAGAGTCGGGAGCTTGCAAAGAAGACAATGGAGTAGGAAA
JMFN040O18+ TTATCGGCTTGGGGCAGAAGAGTCGGGAGCTTGCAAAGAAGACAATGGAGTAGGAAACAA
____________________________________________________________
consensus TTATCGGCTTGGGGCAGAAGAGTCGGGAGCTTGCAAAGAAGACAATGGAGTAGGAAACAA