Contig 002960:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF009I18Sequence368000878 (7)ref|XP_009604694.1|6e-20PREDICTED: transcription factor MYC3-like [Nicotiana tomentosiformis]739002960 (7)ref|XP_007051457.1|8e-80Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614
JMSF011F05Sequence574002960 (7)ref|XP_011094312.1|1e-73PREDICTED: transcription factor MYC2 [Sesamum indicum]
JMSF016E14Sequence547000878 (7)ref|XP_009604694.1|1e-44PREDICTED: transcription factor MYC3-like [Nicotiana tomentosiformis]794002960 (7)ref|XP_007051457.1|9e-80Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614
JMSF035C04Sequence666000878 (7)ref|XP_007051457.1|6e-68Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614730002960 (7)ref|XP_007219048.1|8e-74hypothetical protein PRUPE_ppa004680mg [Prunus persica] gb|EMJ20247.1| hypotheti
JMSF037C11Sequence669000878 (7)ref|XP_007051457.1|3e-68Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614770002960 (7)ref|XP_007051457.1|6e-80Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614
JMSF040G14Sequence641000878 (7)ref|XP_007051457.1|2e-63Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614864002960 (7)ref|XP_007051457.1|3e-81Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614
JMSF042P24Sequence729000878 (7)ref|XP_007051457.1|7e-78Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614719002960 (7)ref|XP_007219048.1|5e-66hypothetical protein PRUPE_ppa004680mg [Prunus persica] gb|EMJ20247.1| hypotheti

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF040G14+ TGTTCCAGTTNCCCTGAAGAAAGAACCATTTCGTTCGCCGATATTGGCCT
                      ____________________________________________________________
consensus TGTTCCAGTTNCCCTGAAGAAAGAACCATTTCGTTCGCCGATATTGGCCT
 
. : . : . : . : . : . :
rJMSF040G14+ CGTTAGCGGCCATGAACTGCTGCAACAAGGACGATCCGCCGGAGCTGACGATCTCAAAGT
rJMSF037C11+ AGCTGACGATCTCAAAGT
rJMSF016E14+ GATCCGCCGGAGCTGACGATCTCAAAGT
                      ____________________________________________________________
consensus CGTTAGCGGCCATGAACTGCTGCAACAAGGACGATCCGCCGGAGCTGACGATCTCAAAGT
 
. : . : . : . : . : . :
rJMSF040G14+ GCTGCAAAGCCGCGCCGCCGGAGATGCTGAGAAGCAAGCGCAAGAAGCATCCGCCGCCGC
rJMSF037C11+ GCTGCAAAGCCGCGCCGCCGGAGATGCTGAGAAGCCAGCGCAAGAAGCATCCGCCGCCGC
rJMSF009I18+ CGGAGATGCTGAGAAGCAAGCGCAAGAAGCATCCGCCGCCGC
rJMSF016E14+ GCTGCAAAGCCGCGCCGCCGGAGATGCTGAGAAGCAAGCGCAAGAAGCATCCGCCGCCGC
                      ____________________________________________________________
consensus GCTGCAAAGCCGCGCCGCCGGAGATGCTGAGAAGCAAGCGCAAGAAGCATCCGCCGCCGC
 
. : . : . : . : . : . :
rJMSF040G14+ CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
rJMSF011F05+ CTCCTACCCGGAATNTGAGCACTCCGACTCCGACTGCCAGTTTCT
rJMSF037C11+ CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
rJMSF009I18+ CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
rJMSF016E14+ CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
                      ____________________________________________________________
consensus CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
 
. : . : . : . : . : . :
rJMSF040G14+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF011F05+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF037C11+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF009I18+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF016E14+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF035C04+ CAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
                      ____________________________________________________________
consensus GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
 
. : . : . : . : . : . :
rJMSF040G14+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF011F05+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF037C11+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF009I18+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF016E14+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF035C04+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF042P24+ GGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
                      ____________________________________________________________
consensus CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
 
. : . : . : . : . : . :
rJMSF040G14+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF011F05+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF037C11+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF009I18+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF016E14+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF035C04+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF042P24+ GCTGAACCACCGGTTCTACACGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
                      ____________________________________________________________
consensus GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
 
. : . : . : . : . : . :
rJMSF040G14+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF011F05+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF037C11+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF009I18+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF016E14+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF035C04+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF042P24+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
                      ____________________________________________________________
consensus AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
 
. : . : . : . : . : . :
rJMSF040G14+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF011F05+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF037C11+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF009I18+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF016E14+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF035C04+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF042P24+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
                      ____________________________________________________________
consensus GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
 
. : . : . : . : . : . :
rJMSF040G14+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF011F05+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF037C11+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF009I18+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF016E14+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF035C04+ CAACCAGAGCACGTCGTCGGCGGCATCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF042P24+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
                      ____________________________________________________________
consensus CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
 
. : . : . : . : . : . :
rJMSF040G14+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF011F05+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF037C11+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF009I18+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF016E14+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF035C04+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF042P24+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
                      ____________________________________________________________
consensus GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
 
. : . : . : . : . : . :
rJMSF040G14+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF011F05+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF037C11+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF009I18+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF016E14+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF035C04+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF042P24+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
                      ____________________________________________________________
consensus AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
 
. : . : . : . : . : . :
rJMSF040G14+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF011F05+ CGTCAACGACATCATGCTTCAGGACAT
rJMSF037C11+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF009I18+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF016E14+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF035C04+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF042P24+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
                      ____________________________________________________________
consensus CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
 
. : . : . : . : . : . :
rJMSF040G14+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF037C11+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF009I18+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF016E14+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF035C04+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF042P24+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
                      ____________________________________________________________
consensus AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
 
. : . : . : . : . : . :
rJMSF040G14+ ACCACTCATAAACATCACATGTATCGTGTATGTA
rJMSF037C11+ ACCACTCATAAACATCACATGTATCGTGTATG
rJMSF009I18+ ACCACTCATAAACATCAC
rJMSF016E14+ ACCACTCATAAACATCACATGTATCGTGTATGTATATATTCCATGC
rJMSF035C04+ ACCACTCATAAACATCACATGTATCGTGTATGTATATATTCCATGCTACTTCTTCCTAAT
rJMSF042P24+ ACCACTCATAAACATCACATGTATCGTGTATGTATATATTCCATGCTACTTCTTCCTAAT
                      ____________________________________________________________
consensus ACCACTCATAAACATCACATGTATCGTGTATGTATATATTCCATGCTACTTCTTCCTAAT
 
. : . : . : . : . : . :
rJMSF035C04+ AATAAATAATTGTGTGTTTCCTCGTTTGCACATCAAGACTAGAAAAATATGATCAGTACC
rJMSF042P24+ AATAAATAATTGTGTGTTTCCTCGTTTGCACATCAAGACTAGAAAAATATGATCAGTACC
                      ____________________________________________________________
consensus AATAAATAATTGTGTGTTTCCTCGTTTGCACATCAAGACTAGAAAAATATGATCAGTACC
 
. : . : . : . : . : . :
rJMSF035C04+ CCAATTGCCCGGTTCGCGATT
rJMSF042P24+ CCAATTGCCCGGTTCGCGATTTGCTTTCGTTGCTAGCTGGGTGAGTTAATGTATGAATCG
                      ____________________________________________________________
consensus CCAATTGCCCGGTTCGCGATTTGCTTTCGTTGCTAGCTGGGTGAGTTAATGTATGAATCG