clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMSF009I18 | Sequence | 368 | 000878 (7) | ref|XP_009604694.1| | 6e-20 | PREDICTED: transcription factor MYC3-like [Nicotiana tomentosiformis] | 739 | 002960 (7) | ref|XP_007051457.1| | 8e-80 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 |
JMSF011F05 | Sequence | 574 | 002960 (7) | ref|XP_011094312.1| | 1e-73 | PREDICTED: transcription factor MYC2 [Sesamum indicum] | |||||
JMSF016E14 | Sequence | 547 | 000878 (7) | ref|XP_009604694.1| | 1e-44 | PREDICTED: transcription factor MYC3-like [Nicotiana tomentosiformis] | 794 | 002960 (7) | ref|XP_007051457.1| | 9e-80 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 |
JMSF035C04 | Sequence | 666 | 000878 (7) | ref|XP_007051457.1| | 6e-68 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | 730 | 002960 (7) | ref|XP_007219048.1| | 8e-74 | hypothetical protein PRUPE_ppa004680mg [Prunus persica] gb|EMJ20247.1| hypotheti |
JMSF037C11 | Sequence | 669 | 000878 (7) | ref|XP_007051457.1| | 3e-68 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | 770 | 002960 (7) | ref|XP_007051457.1| | 6e-80 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 |
JMSF040G14 | Sequence | 641 | 000878 (7) | ref|XP_007051457.1| | 2e-63 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | 864 | 002960 (7) | ref|XP_007051457.1| | 3e-81 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 |
JMSF042P24 | Sequence | 729 | 000878 (7) | ref|XP_007051457.1| | 7e-78 | Basic helix-loop-helix DNA-binding family protein [Theobroma cacao] gb|EOX95614 | 719 | 002960 (7) | ref|XP_007219048.1| | 5e-66 | hypothetical protein PRUPE_ppa004680mg [Prunus persica] gb|EMJ20247.1| hypotheti |
This contig is upended
. : . : . : . : . : . :
rJMSF040G14+ TGTTCCAGTTNCCCTGAAGAAAGAACCATTTCGTTCGCCGATATTGGCCT
____________________________________________________________
consensus TGTTCCAGTTNCCCTGAAGAAAGAACCATTTCGTTCGCCGATATTGGCCT
. : . : . : . : . : . :
rJMSF040G14+ CGTTAGCGGCCATGAACTGCTGCAACAAGGACGATCCGCCGGAGCTGACGATCTCAAAGT
rJMSF037C11+ AGCTGACGATCTCAAAGT
rJMSF016E14+ GATCCGCCGGAGCTGACGATCTCAAAGT
____________________________________________________________
consensus CGTTAGCGGCCATGAACTGCTGCAACAAGGACGATCCGCCGGAGCTGACGATCTCAAAGT
. : . : . : . : . : . :
rJMSF040G14+ GCTGCAAAGCCGCGCCGCCGGAGATGCTGAGAAGCAAGCGCAAGAAGCATCCGCCGCCGC
rJMSF037C11+ GCTGCAAAGCCGCGCCGCCGGAGATGCTGAGAAGCCAGCGCAAGAAGCATCCGCCGCCGC
rJMSF009I18+ CGGAGATGCTGAGAAGCAAGCGCAAGAAGCATCCGCCGCCGC
rJMSF016E14+ GCTGCAAAGCCGCGCCGCCGGAGATGCTGAGAAGCAAGCGCAAGAAGCATCCGCCGCCGC
____________________________________________________________
consensus GCTGCAAAGCCGCGCCGCCGGAGATGCTGAGAAGCAAGCGCAAGAAGCATCCGCCGCCGC
. : . : . : . : . : . :
rJMSF040G14+ CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
rJMSF011F05+ CTCCTACCCGGAATNTGAGCACTCCGACTCCGACTGCCAGTTTCT
rJMSF037C11+ CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
rJMSF009I18+ CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
rJMSF016E14+ CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
____________________________________________________________
consensus CGCCGCCGCGAAGAACTCCTACCCGGAATCTGAGCACTCCGACTCCGACTGCCAGTTTCT
. : . : . : . : . : . :
rJMSF040G14+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF011F05+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF037C11+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF009I18+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF016E14+ GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
rJMSF035C04+ CAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
____________________________________________________________
consensus GAAGGAGCCTCCAATCGTAGACAGACAACAAAACGCGCCGAAGAAGCGTGGGAGAAAACC
. : . : . : . : . : . :
rJMSF040G14+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF011F05+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF037C11+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF009I18+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF016E14+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF035C04+ CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
rJMSF042P24+ GGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
____________________________________________________________
consensus CGGCGCCGGGCGAGTCACTCCGGTGAACCACGTGGAGGCGGAGCGGCAGCGGAGGGAGAA
. : . : . : . : . : . :
rJMSF040G14+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF011F05+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF037C11+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF009I18+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF016E14+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF035C04+ GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
rJMSF042P24+ GCTGAACCACCGGTTCTACACGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
____________________________________________________________
consensus GCTGAACCACCGGTTCTACGCGCTCCGGTCGGTGGTCCCCAACGTCTCAAGGATGGACAA
. : . : . : . : . : . :
rJMSF040G14+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF011F05+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF037C11+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF009I18+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF016E14+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF035C04+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
rJMSF042P24+ AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
____________________________________________________________
consensus AGCCTCGTTATTATCGGACGCAGTGTCGTACATAAACGAGCTTAAAGGCAAAGTGGAGGA
. : . : . : . : . : . :
rJMSF040G14+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF011F05+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF037C11+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF009I18+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF016E14+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF035C04+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
rJMSF042P24+ GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
____________________________________________________________
consensus GCTGGAGTGTCAGCTCCAGCTGAGAGAATCGAAGAAAGTGAAAGTGGAGGCGGTGGGCGA
. : . : . : . : . : . :
rJMSF040G14+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF011F05+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF037C11+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF009I18+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF016E14+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF035C04+ CAACCAGAGCACGTCGTCGGCGGCATCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
rJMSF042P24+ CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
____________________________________________________________
consensus CAACCAGAGCACGTCGTCGGCGGCGTCCTCCGTCGCGTCGCCGGTGGACGTGGAGGTGAA
. : . : . : . : . : . :
rJMSF040G14+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF011F05+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF037C11+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF009I18+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF016E14+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF035C04+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
rJMSF042P24+ GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
____________________________________________________________
consensus GATAGTGGGTCCCGATGCGATGATAAGAGTACAATCGGAAAATGCAAACTACCCGAGCGC
. : . : . : . : . : . :
rJMSF040G14+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF011F05+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF037C11+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF009I18+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF016E14+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF035C04+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
rJMSF042P24+ AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
____________________________________________________________
consensus AAAGCTGATGAATGGGCTCAGAGAACTGGAGCTTGCAGTTCACCATGCCAGCATATCTAG
. : . : . : . : . : . :
rJMSF040G14+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF011F05+ CGTCAACGACATCATGCTTCAGGACAT
rJMSF037C11+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF009I18+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF016E14+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF035C04+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
rJMSF042P24+ CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
____________________________________________________________
consensus CGTCAACGACATCATGCTTCAGGACATCGTGGTTAAGGTTCCGGAAGGATTAAGATCTGA
. : . : . : . : . : . :
rJMSF040G14+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF037C11+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF009I18+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF016E14+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF035C04+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
rJMSF042P24+ AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
____________________________________________________________
consensus AGATGGATTAAGAGCTGCTCTTCTTAGAAGATTAGATCAGCTTTAATTAATTAATTAATT
. : . : . : . : . : . :
rJMSF040G14+ ACCACTCATAAACATCACATGTATCGTGTATGTA
rJMSF037C11+ ACCACTCATAAACATCACATGTATCGTGTATG
rJMSF009I18+ ACCACTCATAAACATCAC
rJMSF016E14+ ACCACTCATAAACATCACATGTATCGTGTATGTATATATTCCATGC
rJMSF035C04+ ACCACTCATAAACATCACATGTATCGTGTATGTATATATTCCATGCTACTTCTTCCTAAT
rJMSF042P24+ ACCACTCATAAACATCACATGTATCGTGTATGTATATATTCCATGCTACTTCTTCCTAAT
____________________________________________________________
consensus ACCACTCATAAACATCACATGTATCGTGTATGTATATATTCCATGCTACTTCTTCCTAAT
. : . : . : . : . : . :
rJMSF035C04+ AATAAATAATTGTGTGTTTCCTCGTTTGCACATCAAGACTAGAAAAATATGATCAGTACC
rJMSF042P24+ AATAAATAATTGTGTGTTTCCTCGTTTGCACATCAAGACTAGAAAAATATGATCAGTACC
____________________________________________________________
consensus AATAAATAATTGTGTGTTTCCTCGTTTGCACATCAAGACTAGAAAAATATGATCAGTACC
. : . : . : . : . : . :
rJMSF035C04+ CCAATTGCCCGGTTCGCGATT
rJMSF042P24+ CCAATTGCCCGGTTCGCGATTTGCTTTCGTTGCTAGCTGGGTGAGTTAATGTATGAATCG
____________________________________________________________
consensus CCAATTGCCCGGTTCGCGATTTGCTTTCGTTGCTAGCTGGGTGAGTTAATGTATGAATCG