clone | 5'-sequence | 3'-sequence | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
JMFF007K04 | Sequence | 551 | 002716 (9) | ref|XP_009788106.1| | 3e-33 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana sylvestris] ref|XP_0 | 710 | 002716 (9) | ref|XP_009590611.1| | 4e-88 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref |
JMFF020H21 | Sequence | 367 | 002716 (9) | ref|XP_011028243.1| | 1e-15 | PREDICTED: tobamovirus multiplication protein 2A-like [Populus euphratica] | |||||
JMFF048E23 | Sequence | 568 | 002716 (9) | ref|XP_009590611.1| | 4e-37 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref | 477 | 002716 (9) | ref|XP_011028243.1| | 5e-31 | PREDICTED: tobamovirus multiplication protein 2A-like [Populus euphratica] |
JMFF051A23 | Sequence | 623 | 002716 (9) | ref|XP_009788106.1| | 4e-39 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana sylvestris] ref|XP_0 | 410 | 002716 (9) | gb|KJB25374.1| | 3e-19 | hypothetical protein B456_004G188200 [Gossypium raimondii] |
JMFN004J09 | Sequence | 641 | 002716 (9) | ref|XP_009590611.1| | 7e-60 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref | |||||
JMSF047O13 | Sequence | 653 | 023285 | ref|XP_004245703.1| | 2e-31 | PREDICTED: deoxyribodipyrimidine photo-lyase isoform X2 [Solanum lycopersicum] | 582 | 002716 (9) | ref|XP_009590611.1| | 5e-81 | PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref |
This contig is upended
. : . : . : . : . : . :
JMFF048E23- GCCTTTCCCTGTTTTTAGTTTCCACACCATT
JMFF007K04- GCCTTTCCCTGTTTTTAGTTTCCACACCATT
____________________________________________________________
consensus GCCTTTCCCTGTTTTTAGTTTCCACACCATT
. : . : . : . : . : . :
JMFF048E23- CTCTCTTTCTCTCTCTATCTCTCTACCTGTCTGTCTTTCTCTCTCTAAAATTTTCTACCC
JMFF007K04- CTCTCTTTCTCTCTCTATCTCTCTACCTGTCTGTCTTTCTCTCTCTAAAATTTTCTACCC
____________________________________________________________
consensus CTCTCTTTCTCTCTCTATCTCTCTACCTGTCTGTCTTTCTCTCTCTAAAATTTTCTACCC
. : . : . : . : . : . :
JMFF048E23- ATTTCACCTCCCACGTCTCCATCTCCTGGAAGGCTCGAATCTTCTAAGCTTGTTATCTGA
JMFF007K04- ATTTCACCTCCCACGTCTCCATCTCCTGGAAGGCTCGAATCTTCTAAGCTTGTTATCTGA
JMFF051A23- A
JMFN004J09- A
____________________________________________________________
consensus ATTTCACCTCCCACGTCTCCATCTCCTGGAAGGCTCGAATCTTCTAAGCTTGTTATCTGA
. : . : . : . : . : . :
JMFF048E23- AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
JMFF007K04- AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
JMFF051A23- AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
JMFN004J09- AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
____________________________________________________________
consensus AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
. : . : . : . : . : . :
JMFF048E23- TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
JMFF007K04- TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
JMFF051A23- TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
JMFN004J09- TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
____________________________________________________________
consensus TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
. : . : . : . : . : . :
JMFF048E23- TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
JMFF007K04- TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
JMFF051A23- TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
JMFN004J09- TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
____________________________________________________________
consensus TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
. : . : . : . : . : . :
JMFF048E23- TGGAGTACAAAAACCA
JMFF007K04- TGGAGTACAAAAACCATTCACCATCGGGTGATGATCATCCCATTCCCTTCCCACCCTCGA
JMFF051A23- TGGAGTACAAAAACCATTCACCATCGGGTGATGATCATCCCATTCCCTTCCCACCCTCGA
JMFN004J09- TGGAGTACAAAAACCATTCACCATCGGGTGATGATCATCCCATTCCCTTCCCACCCTCGA
____________________________________________________________
consensus TGGAGTACAAAAACCATTCACCATCGGGTGATGATCATCCCATTCCCTTCCCACCCTCGA
. : . : . : . : . : . :
JMFF007K04- GTGGTGAATTAGTGCAACTAGGTCGACCTATGCTCGTGGCTGTGTCTTTGGCCAACAACA
JMFF051A23- GTGGTGAATTAGTGCAACTAGGTCGACCTATGCTCGTGGCTGTGTCTTTGGCCAACAACA
JMFN004J09- GTGGTGAATTAGTGCAACTAGGTCGACCTATGCTCGTGGCTGTGTCTTTGGCCAACAACA
____________________________________________________________
consensus GTGGTGAATTAGTGCAACTAGGTCGACCTATGCTCGTGGCTGTGTCTTTGGCCAACAACA
. : . : . : . : . : . :
JMFF007K04- TATTCGATAACCTTCCAAAAGAGTGGTTTTTATACTTGTTTATTGGTATTGGAGTGCTTC
JMFF051A23- TATTCGATAACCTTCCAAAAGAGTGGTTTTTATACTTGTTTATTGGTATTGGAGTGCTTC
JMFN004J09- TATTCGATAACCTTCCAAAAGAGTGGTTTTTATACTTGTTTATTGGTATTGGAGTGCTTC
____________________________________________________________
consensus TATTCGATAACCTTCCAAAAGAGTGGTTTTTATACTTGTTTATTGGTATTGGAGTGCTTC
. : . : . : . : . : . :
JMFF007K04- TTTTTGTAATATCTTGCTTTGGTTGTATCGGAGCTTCAAC
JMFF051A23- TTTTTGTAATATCTTGCTTTGGTTGTATCGGAGCTTCAACAAGGAATGGGTGCTGCTTGA
JMFN004J09- TTTTTGTAATATCTTGCTTTGGTTGTATCGGAGCTTCAACAAGGAATGGGTGCTGCTTGA
____________________________________________________________
consensus TTTTTGTAATATCTTGCTTTGGTTGTATCGGAGCTTCAACAAGGAATGGGTGCTGCTTGA
. : . : . : . : . : . :
JMFF051A23- GTTGTTATTCAGTATTGGTGATCTTGCTGATCCTGGTTGAACTTGGAGCTGCTGCGTTTA
JMFN004J09- GTTGTTATTCAGTATTGGTGATCTTGCTGATCCTGGTTGAACTTGGAGCTGCTGCGTTTA
rJMFF007K04+ CTTGGAGCTGCTGCGTTTA
____________________________________________________________
consensus GTTGTTATTCAGTATTGGTGATCTTGCTGATCCTGGTTGAACTTGGAGCTGCTGCGTTTA
. : . : . : . : . : . :
JMFF051A23- TTTTCTTTGA
JMFN004J09- TTTTCTTTGATGAACGTTGGAAGAAGGAAATTCCAACTGACCGAACGGGTAACTTTGATA
rJMSF047O13+ TGGAAGAAGGAAATTCCAACTGACCGAACGGGTAACTTTGATA
rJMFF007K04+ TTTTCTTTGATGAACGTTGGAAGAAGGAAATTCCAACTGACCGAACGGGTAACTTTGATA
____________________________________________________________
consensus TTTTCTTTGATGAACGTTGGAAGAAGGAAATTCCAACTGACCGAACGGGTAACTTTGATA
. : . : . : . : . : . :
JMFN004J09- TGATATATGAATT
rJMSF047O13+ TGATATATGAATTCCTAGAAGACAACTGGAAAATTGTCAAGTGGGTTGCCCTTGGGGCAG
rJMFF007K04+ TGATATATGAATTCCTAGAAGACAACTGGAAAATTGTCAAGTGGGTTGCCCTTGGGGCAG
____________________________________________________________
consensus TGATATATGAATTCCTAGAAGACAACTGGAAAATTGTCAAGTGGGTTGCCCTTGGGGCAG
. : . : . : . : . : . :
rJMSF047O13+ TTGTTTTGGAGGCTTTAATGTTCTTGTTAGCTCTTGTGGTAAGGGCAGCAAACAGACCAG
rJMFF007K04+ TTGTTTTGGAGGCTTTAATGTTCTTGTTAGCTCTTGTGGTAAGGGCAGCAAACAGACCAG
____________________________________________________________
consensus TTGTTTTGGAGGCTTTAATGTTCTTGTTAGCTCTTGTGGTAAGGGCAGCAAACAGACCAG
. : . : . : . : . : . :
rJMSF047O13+ CAGACTATGATAGTGATGATGAGTATATTGGCGGTCCAAGACAACAGATCCGCCAGCCCA
rJMFF007K04+ CAGACTATGATAGTGATGATGAGTATATTGGCGGTCCAAGACAACAGATCCGCCAGCCCC
____________________________________________________________
consensus CAGACTATGATAGTGATGATGAGTATATTGGCGGTCCAAGACAACAGATCCGCCAGCCCC
. : . : . : . : . : . :
rJMSF047O13+ TAATGAACAACAGGCAACAAGCTCCTGTCACGGGTGTACCTGTTGCAGGTACCCTTGATT
rJMFF007K04+ TAATGAACAACAGGCAACAAGCTCCTGTCACGGGTGTACCTGTTGCAGGTACCCTTGATT
rJMFF048E23+ TAATGAACAACAGGCAACAAGCTCCTGTCACGGGTGTACCTGTTGCAGGTACCCTTGATT
____________________________________________________________
consensus TAATGAACAACAGGCAACAAGCTCCTGTCACGGGTGTACCTGTTGCAGGTACCCTTGATT
. : . : . : . : . : . :
rJMSF047O13+ NTCGACCAAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
rJMFF007K04+ CTCGACCAAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
rJMFF051A23+ AAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
rJMFF020H21+ GACCAAGCCGCAATGATGCTTGGAGTGCACGTANGAGGGAGAAGTATGGGCTTGACA
rJMFF048E23+ CTCGACCAAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
____________________________________________________________
consensus CTCGACCAAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
. : . : . : . : . : . :
rJMSF047O13+ CTTCAGAGTTCACGTACAATCCCTATGAGTCGAACCGCTACCAACCAACAAACGTACAAC
rJMFF007K04+ CTTCAGAGTTCACGTACAATCCCTNTGAGTCGAACCGCTACCAACCAACAAACGTACAAC
rJMFF051A23+ CTTCAGAGTTCACGTACAATCCCTTTGAGTCGAACCGTTACCAACCAACAAACGCACAAC
rJMFF020H21+ CTTCAGAGTTCNCGTACAATCCCTCNGAGTNGANCCGCTNCCANCCAACAAACGTACAAC
rJMFF048E23+ CTTCAGAGTTCACGTACAATCCCTCTGAGTCGAACCGCTACCAACCAACAAACGTACAAC
____________________________________________________________
consensus CTTCAGAGTTCACGTACAATCCCTCTGAGTCGAACCGCTACCAACCAACAAACGTACAAC
. : . : . : . : . : . :
rJMSF047O13+ CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTNGGGTTTCTGACGCATG
rJMFF007K04+ CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTTGGGTTTCTGACGCATG
rJMFF051A23+ CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTTGGGTTTCTGACGCATG
rJMFF020H21+ CAGCCGAGGAAAGAGGTNGTTGCACCATAATGTAATAGCGGTTTGGGTTTNTGANGCATG
rJMFF048E23+ CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTTGGGTTTCTGACGCATG
____________________________________________________________
consensus CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTTGGGTTTCTGACGCATG
. : . : . : . : . : . :
rJMSF047O13+ TCATCATGCACAATTATGTGAGCTGAATTTTTTNATTGGCTGGTACTAGTGTGTGTATCN
rJMFF007K04+ TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGTGTATCT
rJMFF051A23+ TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGTGTATCT
rJMFF020H21+ TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGNGTATCT
rJMFF048E23+ TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGTGTATCT
____________________________________________________________
consensus TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGTGTATCT
. : . : . : . : . : . :
rJMSF047O13+ TTAGAGACGGTTT-CTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATCCT
rJMFF007K04+ TTAGAGACGGTTT-CTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATC--CTT
rJMFF051A23+ TTAGAGACGGTTT-TTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATC--CTT
rJMFF020H21+ TTAGAGACGGTTTCCTGGTGTGAAGGATATATACACAAAACAAAGTTTCNGAATCCTCTA
rJMFF048E23+ TTAGAGACGGTTT-CTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATC--CTT
____________________________________________________________
consensus TTAGAGACGGTTT-CTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATC--CTT
. : . : . : . : . : . :
rJMFF007K04+ AATTGTAACTGCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGAACCCCAGAGG
rJMFF051A23+ AATTGTAACTGCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGAACCCCAGAGG
rJMFF020H21+ CATTGTAANTNCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGNACCCCAGAGG
rJMFF048E23+ AATTGTAACTGCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGAACCCCAGAGG
____________________________________________________________
consensus AATTGTAACTGCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGAACCCCAGAGG
. : . : . : . : . : . :
rJMFF007K04+ GTGAAAAATATTCAGTAATTTTCTTTCTTCTCCT
rJMFF051A23+ GTGAAAAATATTCAGTAATTTTCTTTCTTCTCCTTAATAAAAATGAAAAAAAAATGCATT
rJMFF020H21+ GTGAAAAATA
rJMFF048E23+ GTGAAAAATATTCAGTAATTTTCTTTCTTCTCCTTAATAAAAATGAAAAAAAAATGCATT
____________________________________________________________
consensus GTGAAAAATATTCAGTAATTTTCTTTCTTCTCCTTAATAAAAATGAAAAAAAAATGCATT