Contig 002716:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF007K04Sequence551002716 (9)ref|XP_009788106.1|3e-33PREDICTED: tobamovirus multiplication protein 2A [Nicotiana sylvestris] ref|XP_0710002716 (9)ref|XP_009590611.1|4e-88PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref
JMFF020H21Sequence367002716 (9)ref|XP_011028243.1|1e-15PREDICTED: tobamovirus multiplication protein 2A-like [Populus euphratica]
JMFF048E23Sequence568002716 (9)ref|XP_009590611.1|4e-37PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref477002716 (9)ref|XP_011028243.1|5e-31PREDICTED: tobamovirus multiplication protein 2A-like [Populus euphratica]
JMFF051A23Sequence623002716 (9)ref|XP_009788106.1|4e-39PREDICTED: tobamovirus multiplication protein 2A [Nicotiana sylvestris] ref|XP_0410002716 (9)gb|KJB25374.1|3e-19hypothetical protein B456_004G188200 [Gossypium raimondii]
JMFN004J09Sequence641002716 (9)ref|XP_009590611.1|7e-60PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref
JMSF047O13Sequence653023285ref|XP_004245703.1|2e-31PREDICTED: deoxyribodipyrimidine photo-lyase isoform X2 [Solanum lycopersicum]582002716 (9)ref|XP_009590611.1|5e-81PREDICTED: tobamovirus multiplication protein 2A [Nicotiana tomentosiformis] ref

Alignment

This contig is upended


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JMFF048E23-                                        GCCTTTCCCTGTTTTTAGTTTCCACACCATT
JMFF007K04-                                        GCCTTTCCCTGTTTTTAGTTTCCACACCATT
                      ____________________________________________________________
consensus                                          GCCTTTCCCTGTTTTTAGTTTCCACACCATT
 
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JMFF048E23-           CTCTCTTTCTCTCTCTATCTCTCTACCTGTCTGTCTTTCTCTCTCTAAAATTTTCTACCC
JMFF007K04-           CTCTCTTTCTCTCTCTATCTCTCTACCTGTCTGTCTTTCTCTCTCTAAAATTTTCTACCC
                      ____________________________________________________________
consensus             CTCTCTTTCTCTCTCTATCTCTCTACCTGTCTGTCTTTCTCTCTCTAAAATTTTCTACCC
 
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JMFF048E23-           ATTTCACCTCCCACGTCTCCATCTCCTGGAAGGCTCGAATCTTCTAAGCTTGTTATCTGA
JMFF007K04-           ATTTCACCTCCCACGTCTCCATCTCCTGGAAGGCTCGAATCTTCTAAGCTTGTTATCTGA
JMFF051A23-                                                                      A
JMFN004J09-                                                                      A
                      ____________________________________________________________
consensus             ATTTCACCTCCCACGTCTCCATCTCCTGGAAGGCTCGAATCTTCTAAGCTTGTTATCTGA
 
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JMFF048E23-           AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
JMFF007K04-           AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
JMFF051A23-           AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
JMFN004J09-           AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
                      ____________________________________________________________
consensus             AAGGTGAGGATTTAATGAATTAGCTGAGAAGTATCTCTGGAGCTGCGGATTGAGAGCTTT
 
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JMFF048E23-           TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
JMFF007K04-           TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
JMFF051A23-           TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
JMFN004J09-           TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
                      ____________________________________________________________
consensus             TTCGGGACTTTTTCTACAATATGGCTTGTAAGGGGTGTTTGGAGTGCTTGCTGAAACTCT
 
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JMFF048E23-           TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
JMFF007K04-           TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
JMFF051A23-           TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
JMFN004J09-           TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
                      ____________________________________________________________
consensus             TGAACTTCTTATTGACCCTTGCGGGTCTGGGCATGGTTGGATATGGTATCTACCTCTTTG
 
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JMFF048E23-           TGGAGTACAAAAACCA                                            
JMFF007K04-           TGGAGTACAAAAACCATTCACCATCGGGTGATGATCATCCCATTCCCTTCCCACCCTCGA
JMFF051A23-           TGGAGTACAAAAACCATTCACCATCGGGTGATGATCATCCCATTCCCTTCCCACCCTCGA
JMFN004J09-           TGGAGTACAAAAACCATTCACCATCGGGTGATGATCATCCCATTCCCTTCCCACCCTCGA
                      ____________________________________________________________
consensus             TGGAGTACAAAAACCATTCACCATCGGGTGATGATCATCCCATTCCCTTCCCACCCTCGA
 
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JMFF007K04-           GTGGTGAATTAGTGCAACTAGGTCGACCTATGCTCGTGGCTGTGTCTTTGGCCAACAACA
JMFF051A23-           GTGGTGAATTAGTGCAACTAGGTCGACCTATGCTCGTGGCTGTGTCTTTGGCCAACAACA
JMFN004J09-           GTGGTGAATTAGTGCAACTAGGTCGACCTATGCTCGTGGCTGTGTCTTTGGCCAACAACA
                      ____________________________________________________________
consensus             GTGGTGAATTAGTGCAACTAGGTCGACCTATGCTCGTGGCTGTGTCTTTGGCCAACAACA
 
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JMFF007K04-           TATTCGATAACCTTCCAAAAGAGTGGTTTTTATACTTGTTTATTGGTATTGGAGTGCTTC
JMFF051A23-           TATTCGATAACCTTCCAAAAGAGTGGTTTTTATACTTGTTTATTGGTATTGGAGTGCTTC
JMFN004J09-           TATTCGATAACCTTCCAAAAGAGTGGTTTTTATACTTGTTTATTGGTATTGGAGTGCTTC
                      ____________________________________________________________
consensus             TATTCGATAACCTTCCAAAAGAGTGGTTTTTATACTTGTTTATTGGTATTGGAGTGCTTC
 
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JMFF007K04-           TTTTTGTAATATCTTGCTTTGGTTGTATCGGAGCTTCAAC                    
JMFF051A23-           TTTTTGTAATATCTTGCTTTGGTTGTATCGGAGCTTCAACAAGGAATGGGTGCTGCTTGA
JMFN004J09-           TTTTTGTAATATCTTGCTTTGGTTGTATCGGAGCTTCAACAAGGAATGGGTGCTGCTTGA
                      ____________________________________________________________
consensus             TTTTTGTAATATCTTGCTTTGGTTGTATCGGAGCTTCAACAAGGAATGGGTGCTGCTTGA
 
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JMFF051A23-           GTTGTTATTCAGTATTGGTGATCTTGCTGATCCTGGTTGAACTTGGAGCTGCTGCGTTTA
JMFN004J09-           GTTGTTATTCAGTATTGGTGATCTTGCTGATCCTGGTTGAACTTGGAGCTGCTGCGTTTA
rJMFF007K04+                                                   CTTGGAGCTGCTGCGTTTA
                      ____________________________________________________________
consensus             GTTGTTATTCAGTATTGGTGATCTTGCTGATCCTGGTTGAACTTGGAGCTGCTGCGTTTA
 
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JMFF051A23-           TTTTCTTTGA                                                  
JMFN004J09-           TTTTCTTTGATGAACGTTGGAAGAAGGAAATTCCAACTGACCGAACGGGTAACTTTGATA
rJMSF047O13+                           TGGAAGAAGGAAATTCCAACTGACCGAACGGGTAACTTTGATA
rJMFF007K04+          TTTTCTTTGATGAACGTTGGAAGAAGGAAATTCCAACTGACCGAACGGGTAACTTTGATA
                      ____________________________________________________________
consensus             TTTTCTTTGATGAACGTTGGAAGAAGGAAATTCCAACTGACCGAACGGGTAACTTTGATA
 
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JMFN004J09-           TGATATATGAATT                                               
rJMSF047O13+          TGATATATGAATTCCTAGAAGACAACTGGAAAATTGTCAAGTGGGTTGCCCTTGGGGCAG
rJMFF007K04+          TGATATATGAATTCCTAGAAGACAACTGGAAAATTGTCAAGTGGGTTGCCCTTGGGGCAG
                      ____________________________________________________________
consensus             TGATATATGAATTCCTAGAAGACAACTGGAAAATTGTCAAGTGGGTTGCCCTTGGGGCAG
 
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rJMSF047O13+          TTGTTTTGGAGGCTTTAATGTTCTTGTTAGCTCTTGTGGTAAGGGCAGCAAACAGACCAG
rJMFF007K04+          TTGTTTTGGAGGCTTTAATGTTCTTGTTAGCTCTTGTGGTAAGGGCAGCAAACAGACCAG
                      ____________________________________________________________
consensus             TTGTTTTGGAGGCTTTAATGTTCTTGTTAGCTCTTGTGGTAAGGGCAGCAAACAGACCAG
 
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rJMSF047O13+          CAGACTATGATAGTGATGATGAGTATATTGGCGGTCCAAGACAACAGATCCGCCAGCCCA
rJMFF007K04+          CAGACTATGATAGTGATGATGAGTATATTGGCGGTCCAAGACAACAGATCCGCCAGCCCC
                      ____________________________________________________________
consensus             CAGACTATGATAGTGATGATGAGTATATTGGCGGTCCAAGACAACAGATCCGCCAGCCCC
 
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rJMSF047O13+          TAATGAACAACAGGCAACAAGCTCCTGTCACGGGTGTACCTGTTGCAGGTACCCTTGATT
rJMFF007K04+          TAATGAACAACAGGCAACAAGCTCCTGTCACGGGTGTACCTGTTGCAGGTACCCTTGATT
rJMFF048E23+          TAATGAACAACAGGCAACAAGCTCCTGTCACGGGTGTACCTGTTGCAGGTACCCTTGATT
                      ____________________________________________________________
consensus             TAATGAACAACAGGCAACAAGCTCCTGTCACGGGTGTACCTGTTGCAGGTACCCTTGATT
 
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rJMSF047O13+          NTCGACCAAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
rJMFF007K04+          CTCGACCAAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
rJMFF051A23+                 AAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
rJMFF020H21+             GACCAAGCCGCAATGATGCTTGGAGTGCACGTANGAGGGAGAAGTATGGGCTTGACA
rJMFF048E23+          CTCGACCAAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
                      ____________________________________________________________
consensus             CTCGACCAAGCCGCAATGATGCTTGGAGTGCACGTATGAGGGAGAAGTATGGGCTTGACA
 
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rJMSF047O13+          CTTCAGAGTTCACGTACAATCCCTATGAGTCGAACCGCTACCAACCAACAAACGTACAAC
rJMFF007K04+          CTTCAGAGTTCACGTACAATCCCTNTGAGTCGAACCGCTACCAACCAACAAACGTACAAC
rJMFF051A23+          CTTCAGAGTTCACGTACAATCCCTTTGAGTCGAACCGTTACCAACCAACAAACGCACAAC
rJMFF020H21+          CTTCAGAGTTCNCGTACAATCCCTCNGAGTNGANCCGCTNCCANCCAACAAACGTACAAC
rJMFF048E23+          CTTCAGAGTTCACGTACAATCCCTCTGAGTCGAACCGCTACCAACCAACAAACGTACAAC
                      ____________________________________________________________
consensus             CTTCAGAGTTCACGTACAATCCCTCTGAGTCGAACCGCTACCAACCAACAAACGTACAAC
 
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rJMSF047O13+          CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTNGGGTTTCTGACGCATG
rJMFF007K04+          CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTTGGGTTTCTGACGCATG
rJMFF051A23+          CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTTGGGTTTCTGACGCATG
rJMFF020H21+          CAGCCGAGGAAAGAGGTNGTTGCACCATAATGTAATAGCGGTTTGGGTTTNTGANGCATG
rJMFF048E23+          CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTTGGGTTTCTGACGCATG
                      ____________________________________________________________
consensus             CAGCCGAGGAAAGAGGTCGTTGCACCATAATGTAATAGCGGTTTGGGTTTCTGACGCATG
 
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rJMSF047O13+          TCATCATGCACAATTATGTGAGCTGAATTTTTTNATTGGCTGGTACTAGTGTGTGTATCN
rJMFF007K04+          TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGTGTATCT
rJMFF051A23+          TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGTGTATCT
rJMFF020H21+          TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGNGTATCT
rJMFF048E23+          TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGTGTATCT
                      ____________________________________________________________
consensus             TCATCATGCACAATTATGTGAGCTGAATTTTTTGATTGGCTGGTACTAGTGTGTGTATCT
 
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rJMSF047O13+          TTAGAGACGGTTT-CTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATCCT   
rJMFF007K04+          TTAGAGACGGTTT-CTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATC--CTT
rJMFF051A23+          TTAGAGACGGTTT-TTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATC--CTT
rJMFF020H21+          TTAGAGACGGTTTCCTGGTGTGAAGGATATATACACAAAACAAAGTTTCNGAATCCTCTA
rJMFF048E23+          TTAGAGACGGTTT-CTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATC--CTT
                      ____________________________________________________________
consensus             TTAGAGACGGTTT-CTGGTGTGAAGGATATATACACAAAACAAAGTTTCCGAATC--CTT
 
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rJMFF007K04+          AATTGTAACTGCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGAACCCCAGAGG
rJMFF051A23+          AATTGTAACTGCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGAACCCCAGAGG
rJMFF020H21+          CATTGTAANTNCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGNACCCCAGAGG
rJMFF048E23+          AATTGTAACTGCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGAACCCCAGAGG
                      ____________________________________________________________
consensus             AATTGTAACTGCTGTTTGTTTTTAATTTAAGGGACAACATATGAATATGAACCCCAGAGG
 
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rJMFF007K04+          GTGAAAAATATTCAGTAATTTTCTTTCTTCTCCT                          
rJMFF051A23+          GTGAAAAATATTCAGTAATTTTCTTTCTTCTCCTTAATAAAAATGAAAAAAAAATGCATT
rJMFF020H21+          GTGAAAAATA                                                  
rJMFF048E23+          GTGAAAAATATTCAGTAATTTTCTTTCTTCTCCTTAATAAAAATGAAAAAAAAATGCATT
                      ____________________________________________________________
consensus             GTGAAAAATATTCAGTAATTTTCTTTCTTCTCCTTAATAAAAATGAAAAAAAAATGCATT