| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF017L05 | Sequence | 536 | 003252 (6) | ref|XP_009608692.1| | 3e-81 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 767 | 002566 (6) | ref|XP_009608692.1| | 1e-79 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 |
| JMFF019G14 | Sequence | 557 | 003252 (6) | ref|XP_009608692.1| | 2e-83 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 764 | 002566 (6) | emb|CDP04145.1| | 4e-108 | unnamed protein product [Coffea canephora] |
| JMFF040N19 | Sequence | 504 | 003252 (6) | ref|XP_009608692.1| | 2e-71 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 638 | 002566 (6) | ref|XP_006437446.1| | 9e-82 | hypothetical protein CICLE_v10032936mg [Citrus clementina] gb|ESR50686.1| hypoth |
| JMFN043P16 | Sequence | 628 | 002566 (6) | ref|XP_006437446.1| | 1e-80 | hypothetical protein CICLE_v10032936mg [Citrus clementina] gb|ESR50686.1| hypoth | |||||
| JMSF002M19 | Sequence | 325 | 003252 (6) | emb|CDP04144.1| | 4e-37 | unnamed protein product [Coffea canephora] | 708 | 002566 (6) | emb|CDP04145.1| | 2e-108 | unnamed protein product [Coffea canephora] |
| JMSF012F12 | Sequence | 478 | 003252 (6) | ref|XP_009608692.1| | 2e-69 | PREDICTED: V-type proton ATPase subunit H [Nicotiana tomentosiformis] ref|XP_009 | 752 | 002566 (6) | ref|XP_011044458.1| | 1e-101 | PREDICTED: V-type proton ATPase subunit H isoform X2 [Populus euphratica] |
This contig is upended
. : . : . : . : . : . :
rJMSF002M19+ CTGAGGAATTTGCTTCACAAGGGGACGTTTGGAGCACTTTTGGTGGACCTGGGAGTACTG
rJMFF019G14+ CTGAGGAATTTGCTTCACAAGGGGACGTTTGGAGCACTTTTGGTGGACCTGGGAGTACTG
rJMSF012F12+ TTCACAAGGGGACGTTTGGAGCAC-TTTGGTGGACCTGGGAGTACTG
rJMFF017L05+ TTCACAAGGGGACGTTTGGAGCACTTTTGGTGGACCTGGGAGTACTG
____________________________________________________________
consensus CTGAGGAATTTGCTTCACAAGGGGACGTTTGGAGCACTTTTGGTGGACCTGGGAGTACTG
. : . : . : . : . : . :
rJMSF002M19+ CATATTGTTCAGAACTTGAAAGCACAGGCTTGGAGTGATGAGGATCTTTTGGAGGCTCTC
rJMFF019G14+ CATATTGTTCAGAACTTGAAAGCACAGGCTTGGAGTGATGAGGATCTTTTGGAGGCTCTC
rJMSF012F12+ CATATTGTTCAGAACTTGAAAGCACAGGCTTGGAGTGATGAGGATCTTTTGGAGGCTCTC
rJMFF017L05+ CATATTGTTCAGAACTTGAAAGCACAGGCTTGGAGTGATGAGGATCTTTTGGAGGCTCTC
____________________________________________________________
consensus CATATTGTTCAGAACTTGAAAGCACAGGCTTGGAGTGATGAGGATCTTTTGGAGGCTCTC
. : . : . : . : . : . :
rJMSF002M19+ AACCAACTAGAAGAAGGACTGAAAGATAACATTAAGAAATTGAGTTCATTTGATAAGTAC
rJMFF019G14+ AACCAACTAGAAGAAGGACTGAAAGATAACATTAAGAAATTGAGTTCATTTGATAAGTAC
JMFN043P16- AGGACTGAAAGATAACATTAAGAAATTGAGTTCATTTGATAAGTAC
rJMFF040N19+ AACTAGAAGAAGGACTGAAAGATAACATTAAGAAATTGAGTTCATTTGATAAGTAC
rJMSF012F12+ AACCAACTAGAAGAAGGACTGAAAGATAACATTAAGAAATTGAGTTCATTTGATAAGTAC
rJMFF017L05+ AACCAACTAGAAGAAGGACTGAAAGATAACATTAAGAAATTGAGTTCATTTGATAAGTAC
____________________________________________________________
consensus AACCAACTAGAAGAAGGACTGAAAGATAACATTAAGAAATTGAGTTCATTTGATAAGTAC
. : . : . : . : . : . :
rJMSF002M19+ AAGCAGGAGGTCCTTCTCGGCCATCTTGATTGGTCCCCTATGCATAAAGATCCTGCATTC
rJMFF019G14+ AAGCAGGAGGTCCTTCTCGGCCATCTTGATTGGTCCCCTATGCATAAAGATCCTGCATTC
JMFN043P16- AAGCAGGAGGTCCTTCTCGGCCATCTTGATTGGTCCCCTATGCATAAAGATCCTGCATTC
rJMFF040N19+ AAGCAGGAGGTCCTTCTCGGCCATCTTGATTGGTCCCCTATGCATAAAGATCCTGCATTC
rJMSF012F12+ AAGCAGGAGGTCCTTCTCGGCCATCTTGATTGGTCCCCTATGCATAAAGATCCTGCATTC
rJMFF017L05+ AAGCAGGAGGTCCTTCTCGGCCATCTTGATTGGTCCCCTATGCATAAAGATCCTGCATTC
____________________________________________________________
consensus AAGCAGGAGGTCCTTCTCGGCCATCTTGATTGGTCCCCTATGCATAAAGATCCTGCATTC
. : . : . : . : . : . :
rJMSF002M19+ TGGAGGGACAACATTACAAATTTTGAAGAGAATGATTTCCAGATCCTGAGGGTCCTTATT
rJMFF019G14+ TGGAGGGACAACATTACAAATTTTGAAGAGAATGATTTCCAGATCCTGAGGGTCCTTATT
JMFN043P16- TGGAGGGACAACATTACAAATTTTGAAGAGAATGATTTCCAGATCCTGAGGGTCCTTATT
rJMFF040N19+ TGGAGGGACAACATTACAAATTTTGAAGAGAATGATTTCCAGATCCTGAGGGTCCTTATT
rJMSF012F12+ TGGAGGGACAACATTACAAATTTTGAAGAGAATGATTTCCAGATCCTGAGGGTCCTTATT
rJMFF017L05+ TGGAGGGACAACATTACAAATTTTGAAGAGAATGATTTCCAGATCCTGAGGGTCCTTATT
____________________________________________________________
consensus TGGAGGGACAACATTACAAATTTTGAAGAGAATGATTTCCAGATCCTGAGGGTCCTTATT
. : . : . : . : . : . :
rJMSF002M19+ ACAATTTTGGACACATCCAGTGATCCAAGAACACTTGCTGT-TGCTTGCTTCGATCTGTC
rJMFF019G14+ ACAATTTTGGACACATCCAGTGATCCAAGAACACTTGCTGT-TGCTTGCTTCGATCTGTC
JMFN043P16- ACAATTTTGGACACATCCAGTGATCCAAGAACACTTGCTGT-TGCTTGCTTCGATCTGTC
rJMFF040N19+ ACAATTTTGGACACATCCAGTGATCCAAGAACACTTGCTGT-TGCTTGCTTCGATCTGTC
rJMSF012F12+ ACAATTTTGGACACATCCAGTGATCCAAGAACACTTGCTGT-TGCTTGCTTCGATCTGTC
rJMFF017L05+ ACAATTTTGGACACATCCAGTGATCCAAGAACACTTGCTGTCTGCTTGCTTCGATCTGTC
____________________________________________________________
consensus ACAATTTTGGACACATCCAGTGATCCAAGAACACTTGCTGT-TGCTTGCTTCGATCTGTC
. : . : . : . : . : . :
rJMSF002M19+ ACAATTCATTCAATGCCATCCAGCTGGGCGGGTAATTGTGACTGACCTCAAGGCTAAGGA
rJMFF019G14+ ACAATTCATTCAATGCCATCCAGCTGGGCGGGTAATTGTGACTGACCTCAAGGCTAAGGA
JMFN043P16- ACAATTCATTCAATGCCATCCAGCTGGGCGGGTAATTGTGACTGACCTCAAGGCTAAGGA
rJMFF040N19+ ACAATTCATTCAATGCCATCCAGNTGGGCGGGTAATTGTGACTGACCTCAAGGCTAAGGA
rJMSF012F12+ ACAATTCATTCAATGCCATCCAGCTGGGCGGGTAATTGTGACTGACCTCAAGGCTAAGGA
rJMFF017L05+ ACAATTCATTCAATGCCATCCAGCTGGGCGGGTAATTGTGACTGACCTCAAGGCTAAGGA
____________________________________________________________
consensus ACAATTCATTCAATGCCATCCAGCTGGGCGGGTAATTGTGACTGACCTCAAGGCTAAGGA
. : . : . : . : . : . :
rJMSF002M19+ ACGAGCAATGAAACTGTTGAACCATGAAAATCCTGAGGTTACCAAAAATGCATTGCTATG
rJMFF019G14+ ACGAGCAATGAAACTGTTGAACCATGAAAATCCTGAGGTTACCAAAAATGCATTGCTATG
JMFN043P16- ACGAGCAATGAAACTGTTGAACCATGAAAATCCTGAGGTTACCAAAAATGCATTGCTATG
rJMFF040N19+ ACGAGCAATGAAACTGTTGAACCATGAAAATCCTGAGGTTACCAAAAATGCATTGCTATG
rJMSF012F12+ ACGAGCAATGAAACTGTTGAACCATGAAAATCCTGAGGTTACCAAAAATGCATTGCTATG
rJMFF017L05+ ACGAGCAATGAAACTGTTGAACCATGAAAATCCTGAGGTTACCAAAAATGCATTGCTATG
____________________________________________________________
consensus ACGAGCAATGAAACTGTTGAACCATGAAAATCCTGAGGTTACCAAAAATGCATTGCTATG
. : . : . : . : . : . :
rJMSF002M19+ CATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCCAGCTTTTTGCAGGTTTAGCCATCATC
rJMFF019G14+ CATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCCAGCTTTTTGCAGGTTTAGCCATCATC
JMFN043P16- CATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCCAGCTTTTTGCAGGTTTAGCCATCATC
rJMFF040N19+ CATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCCAGCTTTTTGCAGGTTTAGCCATCATC
rJMSF012F12+ CATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCCAGCTTTTTGCAGGTTTAGCCATCATC
rJMFF017L05+ CATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCCAGCTTTTTGCAGGTTTAGCCATCATC
____________________________________________________________
consensus CATCCAAAGGCTTTTCTTGGGTGCAAAGTATGCCAGCTTTTTGCAGGTTTAGCCATCATC
. : . : . : . : . : . :
rJMSF002M19+ TTCTCTCCTTGTTCAGCCAAAATAAATGCACCAATAATCCACTTAGATTGTGAAGGTGTA
rJMFF019G14+ TTCTCTCCTTGTTCAGCCAAAATAAATGCACCAATAATCCACTTAGATTGTGAAGGTGTA
JMFN043P16- TTCTCTCCTTGTTCAGCCAAAATAAATGCACCAATAATCCACTTAGATTGTGAAGGTGTA
rJMFF040N19+ TTCTCTCCTTGTTCAGCCAAAATAAATGCACCAATAATCCACTTAGATTGTGAAGGTGTA
rJMSF012F12+ TTCTCTCCTTGTTCAGCCAAAATAAATGCACCAATAATCCACTTAGATTGTGAAGGTGTA
rJMFF017L05+ TTCTCTCCTTGTTCAGCCAAAATAAATGCACCAATAATCCACTTAGATTGTGAAGGTGTA
____________________________________________________________
consensus TTCTCTCCTTGTTCAGCCAAAATAAATGCACCAATAATCCACTTAGATTGTGAAGGTGTA
. : . : . : . : . : . :
rJMSF002M19+ ACATGAGTGTCATTATTTCAGTACTCCATCCTCTAAGGCGGACATTCCTTTTTATACTTG
rJMFF019G14+ ACATGAGTGTCATTATTTCAGTACTCCATCCTCTAAGGCGGACATTCCTTTTTATACTTG
JMFN043P16- ACATGAGTGTCATTATTTCAGTACTCCATCCTCTAAGGCGGACATTCCTTTTTATACTTG
rJMFF040N19+ ACATGAGTGTCATTATTTCAGTACTCCATCCTNTAAGGCGGACATTCCTTTTTATACTTG
rJMSF012F12+ ACATGAGTGTCATTATTTCAGTACTCCATCCTCTAAGGCGGACATTCCTTTTTATACTTG
rJMFF017L05+ ACATGAGTGTCATTATTTCAGTACTCCATCCTCTAAGGCGGACATTCCTTTTTATACTTG
____________________________________________________________
consensus ACATGAGTGTCATTATTTCAGTACTCCATCCTCTAAGGCGGACATTCCTTTTTATACTTG
. : . : . : . : . : . :
rJMSF002M19+ TGAGGGTAATGTTTGCAAGAATTATTTATTTTGGTACGTAC
rJMFF019G14+ TGAGGGTAATGTTTGCAAGAATTATTTATTTTGGTACGTACAGAGTTCTACCAATCAGAC
JMFN043P16- TGAGGGTAATGTTTGCAAGAATTATTTATTTTGGTACGTACAGAGTTCTACCAATCAGAC
rJMFF040N19+ TGAGGGTAATGTTTGCAAGAATTATTTATTTTGGTACGTACAGAGTTCTACCAATCAGAC
rJMSF012F12+ TGAGGGTAATGTTTGCAAGAATTATTTATTTTGGTACGTACAGAGTTCTACCAATCAGAC
rJMFF017L05+ TGAGGGTAATGTTTGCAAGAATTATTTATTTTGGTACGTACAGAGTTCTACCAATCAGAC
____________________________________________________________
consensus TGAGGGTAATGTTTGCAAGAATTATTTATTTTGGTACGTACAGAGTTCTACCAATCAGAC
. : . : . : . : . : . :
rJMFF019G14+ AATTTCTCAATGTGTTTGGAATAATGTTTGAATCATCATGCCA
JMFN043P16- AATTTCTCAATGTGTTTGGAATAATGTTTGAATCATCATGCCA
rJMFF040N19+ AATTTCTCAATGTGTTTGGAATAATGTT
rJMSF012F12+ AATTTCTCAATGTGTTTGGAATAATGTTTGAATCATCATGCCA
rJMFF017L05+ AATTTCTCAATGTGTTTGGAATAATGTTTGAATCATCATGCCAATGTGTTATGTATAATA
____________________________________________________________
consensus AATTTCTCAATGTGTTTGGAATAATGTTTGAATCATCATGCCAATGTGTTATGTATAATA