Contig 002437:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF005D18Sequence438002437 (5)ref|XP_009788012.1|1e-50PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris]737009732 (6)ref|XP_006356504.1|1e-72PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos
JMFF020P15Sequence454002437 (5)ref|XP_009788012.1|3e-53PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris]724009732 (6)ref|XP_006356504.1|2e-63PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos
JMSF006B24Sequence274002437 (5)ref|XP_009788012.1|8e-30PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris]493005834 (3)ref|XP_009771925.1|1e-50PREDICTED: subtilisin-like protease [Nicotiana sylvestris]
JMSF038J24Sequence715002437 (5)ref|XP_009788012.1|9e-101PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana sylvestris]800009732 (6)ref|XP_006356504.1|5e-86PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos
JMSF046P20Sequence719002437 (5)ref|XP_009613182.1|5e-87PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Nicotiana tomentosiformis]661009732 (6)ref|XP_006356504.1|3e-48PREDICTED: probable peptide/nitrate transporter At1g22540-like [Solanum tuberos

Alignment

This contig is upended


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JMSF038J24+                CGAGACCCCAACTAAGGTTGTCCTGAACATAGTTCAAAATCCAGAGTGTAACCAT
JMSF046P20+           AAACCCGAGACCCCAACTAAGGTTGTCCTGAACATAGTTCAAAATCCAGAGTGTAACCAT
                      ____________________________________________________________
consensus             AAACCCGAGACCCCAACTAAGGTTGTCCTGAACATAGTTCAAAATCCAGAGTGTAACCAT
 
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JMSF038J24+           AACGCCAAAGCACATCCCGAAATACCACCAGTTGAAGAACGAGCTTTTGGCTTTGCATTC
JMSF046P20+           AACGCCAAAGCACATCCCGAAATACCACCAGTTGAAGAACGAGCTTTTGGCTTTGCATTC
                      ____________________________________________________________
consensus             AACGCCAAAGCACATCCCGAAATACCACCAGTTGAAGAACGAGCTTTTGGCTTTGCATTC
 
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JMSF038J24+           TTGCGGATCTTGAGTATCGAACTGATCAGCCCCGAAAGCTTGAACACAAGGCTTGTGCCC
JMSF046P20+           TTGCGGATCTTGAGTATCGAACTGATCAGCCCCGAAAGCTTGAACACAAGGCTTGTGCCC
                      ____________________________________________________________
consensus             TTGCGGATCTTGAGTATCGAACTGATCAGCCCCGAAAGCTTGAACACAAGGCTTGTGCCC
 
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JMSF038J24+           ACCTTGTGCTAGTGCCACAAGGTATAGAGCAAAGAAGAAGAAGATAACTTGGAACTGAGG
JMSF046P20+           ACCTTGTGCTAGTGCCACAAGGTATAGAGCAAAGAAGAAGAAGATAACTTGGAACTGAGG
                      ____________________________________________________________
consensus             ACCTTGTGCTAGTGCCACAAGGTATAGAGCAAAGAAGAAGAAGATAACTTGGAACTGAGG
 
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JMFF020P15+                               GAGAGTCAGAAGACTCGAAAGGAAGCACAGTAGAGATGGT
JMFF005D18+                                                   GGAAGCACAGTAGAGATGGT
JMSF038J24+           AGGAGAGCCTGCACCATTTTGAGAGTCAGAAGACTCGAAAGGAAGCACAGTAGAGATGGT
JMSF046P20+           AGGAGAGCCTGCACCATTTTGAGAGTCAGAAGACTCGAAAGGAAGCACAGTAGAGATGGT
                      ____________________________________________________________
consensus             AGGAGAGCCTGCACCATTTTGAGAGTCAGAAGACTCGAAAGGAAGCACAGTAGAGATGGT
 
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JMFF020P15+           CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTNCCGACC
JMFF005D18+           CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTACCGACC
JMSF038J24+           CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTACCGACC
JMSF046P20+           CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTACCGACC
                      ____________________________________________________________
consensus             CAGGAAGCCCAGCGCCAGGGTATAGAGCAGGGAGGAGATCACAATTGTCCGGTACCGACC
 
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JMFF020P15+           AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
JMFF005D18+           AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
JMSF038J24+           AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
JMSF046P20+           AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
                      ____________________________________________________________
consensus             AAGAAATGAGTCGGCCAGGAAGGCACCCAAAAGCGGCAAAAGCGACGCAACTCCGGACCA
 
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JMFF020P15+           GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
JMFF005D18+           GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
JMSF038J24+           GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
JMSF006B24+                                     CCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
JMSF046P20+           GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
                      ____________________________________________________________
consensus             GGCGTTGACATTGGCCGCCGCCGCCGCCGTCGATTGGCCGAGAGGCCCAGTGAGATAGCT
 
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JMFF020P15+           TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
JMFF005D18+           TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
JMSF038J24+           TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
JMSF006B24+           TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
JMSF046P20+           TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
                      ____________________________________________________________
consensus             TATCAGATTCGAACTTATTCCATAATAGGAAAACCTCTCTGCCACTTCCACACCTATGAT
 
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JMFF020P15+           GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
JMFF005D18+           GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
JMSF038J24+           GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
JMSF006B24+           GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
JMSF046P20+           GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATC-GGCAGCGGGGCGGCCTTTGAAATC
                      ____________________________________________________________
consensus             GAAGGATGCGGATCGCCACCGCCCCGTTCTGGATCGGGCAGCGGGGCGGCCTTTGAAATC
 
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JMFF020P15+           GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
JMFF005D18+           GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
JMSF038J24+           GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
JMSF006B24+           GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
JMSF046P20+           GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
                      ____________________________________________________________
consensus             GACAGAGCCATCCACGACGTCTTGGTGGAGAAATGGGGTTTCGGCGTCGGAAAGGATGGT
 
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JMFF020P15+           TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGC           
JMFF005D18+           TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGT  
JMSF038J24+           TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGT  
JMSF006B24+           TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGT  
JMSF046P20+           TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGTCC
                      ____________________________________________________________
consensus             TGTTCCGGTGGCGGCCATAGAGAGGAGACGTCCACCACGACGTCTCTGCGCCCAAAGTCC