Contig 001371:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF028A14Sequence527010858 (9)ref|XP_006359369.1|2e-77PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum]683001371 (7)ref|XP_009768280.1|8e-71PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMFN009C01Sequence609001371 (7)ref|XP_009768280.1|1e-105PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMFS101C02Sequence619001371 (7)ref|XP_009768280.1|1e-39PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMSF025E06Sequence689010858 (9)ref|XP_006359369.1|8e-110PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum]787001371 (7)ref|XP_009768280.1|2e-54PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMSF027B17Sequence679010858 (9)ref|XP_006359369.1|8e-110PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum]772001371 (7)ref|XP_009768280.1|2e-70PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMSF029G13Sequence664010858 (9)ref|XP_006359369.1|3e-91PREDICTED: dynamin-related protein 3A-like [Solanum tuberosum]756001371 (7)ref|XP_009768280.1|7e-86PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]
JMSF042A21Sequence486010858 (9)emb|CAN69848.1|2e-33hypothetical protein VITISV_007522 [Vitis vinifera]763001371 (7)ref|XP_009768280.1|1e-82PREDICTED: dynamin-related protein 3A-like [Nicotiana sylvestris]

Alignment

This contig is upended


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JMFN009C01-                            ACATTCTATTTCTATGATTCATTTGAGAGAGCCACCAAGTGTC
                      ____________________________________________________________
consensus                              ACATTCTATTTCTATGATTCATTTGAGAGAGCCACCAAGTGTC
 
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JMFN009C01-           TTGAGGCCCACAGAAACCCACACAGATCAGGAGACCATCGAAATAACTGTCAC-AAAACT
rJMSF042A21+                            CACACAGATCAGGAGACCATNGAAATAACTGTCACNAAAACT
rJMSF029G13+                                                                AAAACT
                      ____________________________________________________________
consensus             TTGAGGCCCACAGAAACCCACACAGATCAGGAGACCATCGAAATAACTGTCACNAAAACT
 
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JMFN009C01-           GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMSF042A21+          GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMSF029G13+          GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
rJMFF028A14+                                                                TAAAGC
rJMSF027B17+                                                               CTAAAGC
rJMSF025E06+                                                              CCTAAAGC
                      ____________________________________________________________
consensus             GTTGCTGAGATCATATTATGACATTGTTAGAAAGAATATTGAAGATTCTGTACCTAAAGC
 
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JMFN009C01-           AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF042A21+          AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF029G13+          AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMFF028A14+          AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF027B17+          AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
rJMSF025E06+          CATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
                      ____________________________________________________________
consensus             AATCATGCACTTCCTGGTAAATCACACCAAACGAGAACTGCACAACGTATTTATCAAAAA
 
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JMFN009C01-           GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF042A21+          GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF029G13+          GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMFF028A14+          GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF027B17+          GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
rJMSF025E06+          GC-TTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
                      ____________________________________________________________
consensus             GCTTTACAGAGATAACCTCTTTGAAGAGATGCTGCAAGAACCTGATGAGGTAGCTACAAA
 
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JMFN009C01-           GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF042A21+          GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF029G13+          GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMFF028A14+          GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF027B17+          GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
JMFS101C02-                AGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
rJMSF025E06+          GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
                      ____________________________________________________________
consensus             GAGAAAGCGCACTCGTGATACACTCCGTGTACTTCAGCAAGCATTCAAGACGTTGGATGA
 
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JMFN009C01-           ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF042A21+          ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF029G13+          ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMFF028A14+          ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF027B17+          ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
JMFS101C02-           ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
rJMSF025E06+          ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
                      ____________________________________________________________
consensus             ATTGCCACTTGAAGCTGAGTCAGTTGAAAGAGGCTATAGTTTGAGTCCTGATCCAACAGG
 
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JMFN009C01-           ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF042A21+          ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF029G13+          ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMFF028A14+          ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF027B17+          ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
JMFS101C02-           ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
rJMSF025E06+          ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
                      ____________________________________________________________
consensus             ATTGCCAAAGATCCATGGGCTCCCCACATCCTCTATGTATACTACTAGTAGTTCAGTGGA
 
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JMFN009C01-           TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF042A21+          TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF029G13+          TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMFF028A14+          TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF027B17+          TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
JMFS101C02-           TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
rJMSF025E06+          TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
                      ____________________________________________________________
consensus             TTCATACACTGCTTCCCCCAAGAACCCAAGATCACGCAAATCTTCACATTCAGGGGAGCT
 
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JMFN009C01-           TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF042A21+          TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF029G13+          TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMFF028A14+          TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF027B17+          TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
JMFS101C02-           TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
rJMSF025E06+          TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
                      ____________________________________________________________
consensus             TCAGTCACCCATGTATTATGTTGGTGGAGATTCTAATGGCAATGGACGCAATTCTCTTCT
 
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JMFN009C01-           GGGACTTTACCCAACAATTGATGCATA                                 
rJMSF042A21+          GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF029G13+          GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMFF028A14+          GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF027B17+          GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
JMFS101C02-           GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
rJMSF025E06+          GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
                      ____________________________________________________________
consensus             GGGACTTTACCCAACAATTGATGCATAAGAATGCAGAAACGAACAACATTGATAATTTGG
 
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rJMSF042A21+          ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF029G13+          ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMFF028A14+          ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF027B17+          ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
JMFS101C02-           ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
rJMSF025E06+          ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
                      ____________________________________________________________
consensus             ATTTATTTTATTTCCCTCTCCAACATTATTGCAGAGGCATGCAGGATCTAAAGCTCTGGA
 
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rJMSF042A21+          TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF029G13+          TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMFF028A14+          TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF027B17+          TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
JMFS101C02-           TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
rJMSF025E06+          TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
                      ____________________________________________________________
consensus             TCTGGTATGATAGGAGAGTTGCTATTCTTTTATGGAAAGATGATGCTTAGATGTATAATA
 
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rJMSF042A21+          TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF029G13+          TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMFF028A14+          TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF027B17+          TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
JMFS101C02-           TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
rJMSF025E06+          TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
                      ____________________________________________________________
consensus             TTATGCCTACGGCCTACACATGTTAGATATTTTTTGGTCCCTATAGCACATCATATATGC
 
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rJMSF042A21+          A                                                           
rJMSF029G13+          ATTAGTATAG                                                  
rJMFF028A14+          ATTAGTATAGGCTCT                                             
rJMSF027B17+          ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
JMFS101C02-           ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
rJMSF025E06+          ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
                      ____________________________________________________________
consensus             ATTAGTATAGGCTCTGGAATGAATGAATAATTGGTAGCTGTGTGAACAGAAGCTGCAATC
 
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rJMSF027B17+          AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAAC                      
JMFS101C02-           AGTT                                                        
rJMSF025E06+          AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAACTGCTGCCTGGTATTTGAATGCT
                      ____________________________________________________________
consensus             AGTTTTGTTTTTATTTTTTGTTATGGGTTGTGGCCAACTGCTGCCTGGTATTTGAATGCT