Contig 001336:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMSF017J10Sequence511003634 (2)gb|AAV88066.1|1e-06NBS-LRR protein [Ipomoea batatas]687001336 (2)gb|AAL47004.1|AF448811_12e-89unknown [Davidia involucrata]
JMSF028J15Sequence673007626 (10)ref|XP_009611467.1|6e-64PREDICTED: CSC1-like protein ERD4 isoform X1 [Nicotiana tomentosiformis]690001336 (2)ref|XP_004244862.1|3e-121PREDICTED: CSC1-like protein ERD4 [Solanum lycopersicum]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF028J15+ TCTTATCCAAGGCC
                      ____________________________________________________________
consensus TCTTATCCAAGGCC
 
. : . : . : . : . : . :
rJMSF028J15+ GAGGGCATTCCTTCAGAAAGCCACGCAGTGAGGGCTGCTTCCGGGAAGTATTTTTATTTT
                      ____________________________________________________________
consensus GAGGGCATTCCTTCAGAAAGCCACGCAGTGAGGGCTGCTTCCGGGAAGTATTTTTATTTT
 
. : . : . : . : . : . :
rJMSF028J15+ ACAGTGCTGAATGTTTTCATTGGCGTCACGATTGGTTCCACGCTTTTCGATACATTGAAG
                      ____________________________________________________________
consensus ACAGTGCTGAATGTTTTCATTGGCGTCACGATTGGTTCCACGCTTTTCGATACATTGAAG
 
. : . : . : . : . : . :
rJMSF028J15+ TCAATTGAGGATAACCCCAACAGTATAATTTCTTTGCTGGCAACAAGTCTCCCCAGCAGT
                      ____________________________________________________________
consensus TCAATTGAGGATAACCCCAACAGTATAATTTCTTTGCTGGCAACAAGTCTCCCCAGCAGT
 
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rJMSF028J15+ GCAACCTTCTTCCTGACTTTTGTGGCTCTAAAGTTCTTTGTTGGCTATGGTCTCGAGCTG
                      ____________________________________________________________
consensus GCAACCTTCTTCCTGACTTTTGTGGCTCTAAAGTTCTTTGTTGGCTATGGTCTCGAGCTG
 
. : . : . : . : . : . :
rJMSF028J15+ TCGAGAATAGTTCCTCTAATAATCTTCCATCTAAAGAAGAAGTACATGTGCAAAACTGAT
                      ____________________________________________________________
consensus TCGAGAATAGTTCCTCTAATAATCTTCCATCTAAAGAAGAAGTACATGTGCAAAACTGAT
 
. : . : . : . : . : . :
rJMSF028J15+ GCCGAGATAAAGGAAGCCTGGGCTCCTGGAGATCTAGGATATGCAACTCGATTTCCTGGT
rJMSF017J10+ CTAGGATATGCAACTCGATTTCCTGGT
                      ____________________________________________________________
consensus GCCGAGATAAAGGAAGCCTGGGCTCCTGGAGATCTAGGATATGCAACTCGATTTCCTGGT
 
. : . : . : . : . : . :
rJMSF028J15+ GACATGCTGGTTCTCATCATTTGTCTTTGTTACTCAGTCATTGCTCCAATCATTATTCCA
rJMSF017J10+ GACATGCTGGTTCTCATCATTTGTCTTTGTTACTCAGTCATTGCTCCAATCATTATTCCA
                      ____________________________________________________________
consensus GACATGCTGGTTCTCATCATTTGTCTTTGTTACTCAGTCATTGCTCCAATCATTATTCCA
 
. : . : . : . : . : . :
rJMSF028J15+ TTTGGGGCGGTTTACTTCGGCTTGGGATGGCTTCTTCTTCGCAATCAGGCACTGAAAGTG
rJMSF017J10+ TTTGGGGCGGTTTACTTCGGCTTGGGATGGCTTCTTCTTCGCAATCAGGCACTGAAAGTG
                      ____________________________________________________________
consensus TTTGGGGCGGTTTACTTCGGCTTGGGATGGCTTCTTCTTCGCAATCAGGCACTGAAAGTG
 
. : . : . : . : . : . :
rJMSF028J15+ TACGTTCCATCGTTCGAGAGCTACGGGAAGATGTGGCCGCATATGCACACTCGGGTGGTG
rJMSF017J10+ TACGTTCCATCGTTCGAGAGCTACGGGAAGATGTGGCCGCATATGCACACTCGGGTGGTG
                      ____________________________________________________________
consensus TACGTTCCATCGTTCGAGAGCTACGGGAAGATGTGGCCGCATATGCACACTCGGGTGGTG
 
. : . : . : . : . : . :
rJMSF028J15+ GCTGCCTTGATTCTGTATCAGCTGACGATGATCGGTTATTTTGGGGTGAAGAAGTTTCCC
rJMSF017J10+ GCTGCCTTGATTCTGTATCAGCTGACGATGATCGGTTATTTTGGGGTGAAGAAGTTTCCC
                      ____________________________________________________________
consensus GCTGCCTTGATTCTGTATCAGCTGACGATGATCGGTTATTTTGGGGTGAAGAAGTTTCCC
 
. : . : . : . : . : . :
rJMSF028J15+ TATGCCCCACTCGTCATCCCGCTTCCAATACTGTCCTTCCTCTTCGCCTTTGTGTGCAGT
rJMSF017J10+ TATGCCCCACTCGTCATCCCGCTTCCAATACTGTCCTTCCTCTTCGCCTTTGTGTGCAGT
                      ____________________________________________________________
consensus TATGCCCCACTCGTCATCCCGCTTCCAATACTGTCCTTCCTCTTCGCCTTTGTGTGCAGT
 
. : . : . : . : . : . :
rJMSF028J15+ AAGAAATTCTACCGAT
rJMSF017J10+ AAGAAATTCTACCGATTCTTCCAAAGCACAGCCCTGGAAGCAGTTTCTGCAGGCAAAGAA
                      ____________________________________________________________
consensus AAGAAATTCTACCGATTCTTCCAAAGCACAGCCCTGGAAGCAGTTTCTGCAGGCAAAGAA
 
. : . : . : . : . : . :
rJMSF017J10+ AAAAAAGAAGTTCCCAACATGGATATCATCTTCAGGTCCTTCATCCCCCCATGCTTTGGT
                      ____________________________________________________________
consensus AAAAAAGAAGTTCCCAACATGGATATCATCTTCAGGTCCTTCATCCCCCCATGCTTTGGT
 
. : . : . : . : . : . :
rJMSF017J10+ ACTGAGAAGTCCGACGAAGATCACTTCGAAGATGCTTTGTCCCAAGTTTCGAGATCAGCT
                      ____________________________________________________________
consensus ACTGAGAAGTCCGACGAAGATCACTTCGAAGATGCTTTGTCCCAAGTTTCGAGATCAGCT
 
. : . : . : . : . : . :
rJMSF017J10+ TCCAATGTCTGATTACATCAATTTGTTTCTGTATGTTTCCATGGTGTGTGTTCACATTAT
                      ____________________________________________________________
consensus TCCAATGTCTGATTACATCAATTTGTTTCTGTATGTTTCCATGGTGTGTGTTCACATTAT
 
. : . : . : . : . : . :
rJMSF017J10+ GTTCCTCAAAAACTGTTGGTTGGTCTATTCATGGTTTCTTGTGAATACATTAGTTGATAG
                      ____________________________________________________________
consensus GTTCCTCAAAAACTGTTGGTTGGTCTATTCATGGTTTCTTGTGAATACATTAGTTGATAG
 
. : . : . : . : . : . :
rJMSF017J10+ TGCAGGGGGTTTGTCAATATCAATATATCATCGTGGATCAGCATATAATATATTCTGTAC
                      ____________________________________________________________
consensus TGCAGGGGGTTTGTCAATATCAATATATCATCGTGGATCAGCATATAATATATTCTGTAC