Contig 001248:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF043B18Sequence628010681 (8)ref|XP_002270988.3|2e-66PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Vitis vinifera]530001248 (8)gb|EYU43185.1|4e-72hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata]
JMFF051C18Sequence555010681 (8)ref|XP_009795256.1|5e-48PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]614001248 (8)gb|EYU43185.1|1e-71hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata]
JMFF051I16Sequence554010681 (8)ref|XP_009795256.1|3e-49PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]532001248 (8)gb|KDO58457.1|3e-56hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis]
JMFF051K16Sequence555010681 (8)ref|XP_009795256.1|1e-49PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]493001248 (8)gb|KDO58457.1|9e-54hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis]
JMSF002L24Sequence391010681 (8)ref|XP_010112806.1|3e-12Threonine--tRNA ligase [Morus notabilis] gb|EXC34921.1| Threonine--tRNA ligase [748001248 (8)gb|EYU43185.1|1e-141hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata]
JMSF009C07Sequence285010681 (8)717001248 (8)ref|XP_009795256.1|3e-126PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Nicotiana sylvestris]
JMSF021J21Sequence627010681 (8)emb|CAN65674.1|2e-63hypothetical protein VITISV_002009 [Vitis vinifera]764001248 (8)gb|EYU43185.1|2e-137hypothetical protein MIMGU_mgv1a002431mg [Erythranthe guttata]
JMSF021P20Sequence664010681 (8)ref|XP_002270988.3|1e-75PREDICTED: probable threonine--tRNA ligase, cytoplasmic [Vitis vinifera]720001248 (8)gb|KDO58457.1|2e-127hypothetical protein CISIN_1g0468081mg, partial [Citrus sinensis]

Alignment

This contig is upended


. : . : . : . : . : . :
rJMSF009C07+ TAC
rJMSF002L24+ TTAC
                      ____________________________________________________________
consensus TTAC
 
. : . : . : . : . : . :
rJMSF009C07+ AGAGGGAATTTTGCAACAATTTGGTTTTGATAATTATGAGGTCAACCTTTCAACAAGGCC
rJMSF002L24+ AGAGGGAATTTTGCAACAATTTGGTTTTGATAATTATGAGGTCAACCTTTCAACAAGGCC
rJMSF021P20+ GGCC
rJMSF021J21+ TTGGTTTTGATAATTATGAGGTCAACCTTTCAACAAGGCC
                      ____________________________________________________________
consensus AGAGGGAATTTTGCAACAATTTGGTTTTGATAATTATGAGGTCAACCTTTCAACAAGGCC
 
. : . : . : . : . : . :
rJMSF009C07+ AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
rJMSF002L24+ AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
rJMSF021P20+ AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
rJMSF021J21+ AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
                      ____________________________________________________________
consensus AGAGAAATCCGTGGGAAATGATGATATATGGGAAAAAGCAACTTCTGCACTTAAGGATGC
 
. : . : . : . : . : . :
rJMSF009C07+ TTTGAACGACAAATGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
rJMSF002L24+ TTTGAACGACAAAGGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
rJMSF021P20+ TTTGAACGACAAATGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
rJMSF021J21+ TTTGAACGACAAAGGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
                      ____________________________________________________________
consensus TTTGAACGACAAATGTTGGACTTATCAGATAGATGAAGGAGGTGGTGCCTTTTATGGTCC
 
. : . : . : . : . : . :
rJMSF009C07+ TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATNCA
rJMSF002L24+ TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATACA
rJMSF021P20+ TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATACA
rJMSF021J21+ TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATACA
                      ____________________________________________________________
consensus TAAGATCGATCTCAAAATCGAGGATGCTCTAGGAAGAAAGTGGCAATGCTCAACCATACA
 
. : . : . : . : . : . :
rJMSF009C07+ GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
rJMSF002L24+ GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
rJMSF021P20+ GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
rJMSF021J21+ GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
rJMFF043B18+ TCGGACCAAGAGAA
rJMFF051C18+ ACTCGGACCAAGAGAA
                      ____________________________________________________________
consensus GGTGGATTTTAATTTACCGGAGCGTTTTGACATGACATATGTTGACTCGGACCAAGAGAA
 
. : . : . : . : . : . :
rJMSF009C07+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMSF002L24+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMSF021P20+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMSF021J21+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMFF043B18+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
rJMFF051I16+ TTGGAGT
rJMFF051C18+ GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
                      ____________________________________________________________
consensus GAAGCGCCCAATCTTAATCCACCGAGCTGTTCTTGGATCTCTGGAGCGGTTCTTTGGAGT
 
. : . : . : . : . : . :
rJMSF009C07+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMSF002L24+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMSF021P20+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMSF021J21+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMFF043B18+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMFF051I16+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMFF051K16+ TAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
rJMFF051C18+ CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
                      ____________________________________________________________
consensus CCTAATAGAGCATTATGCCGGCGATTTTCCTTTATGGCTTTCTCCAATCCAAACAAGACT
 
. : . : . : . : . : . :
rJMSF009C07+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMSF002L24+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACGAGGTGGAGAAGAGACTAAAGGC
rJMSF021P20+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMSF021J21+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACGAGGTGGAGAAGAGACTAAAGGC
rJMFF043B18+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMFF051I16+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMFF051K16+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
rJMFF051C18+ TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
                      ____________________________________________________________
consensus TATACCCGTGACTGACACACAGCTTGAGTTTTGCAACAAGGTGGAGAAGAGACTAAAGGC
 
. : . : . : . : . : . :
rJMSF009C07+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMSF002L24+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTACCAAAGCTCATTAGAAACGC
rJMSF021P20+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMSF021J21+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTACCAAAGCTCATTAGAAACGC
rJMFF043B18+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMFF051I16+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMFF051K16+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
rJMFF051C18+ GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
                      ____________________________________________________________
consensus GAGCGGCATTCGTGCCGAGGTTTGCAGCGGTGAGCGTTTGCCAAAGCTCATTAGAAACGC
 
. : . : . : . : . : . :
rJMSF009C07+ AGAGAAGCAGAAGATCCCANTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMSF002L24+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMSF021P20+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMSF021J21+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMFF043B18+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMFF051I16+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMFF051K16+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
rJMFF051C18+ AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
                      ____________________________________________________________
consensus AGAGAAGCAGAAGATCCCATTGATGGCTGTCGTCGGGCCAAAAGAAGTGGAAAGTGATGC
 
. : . : . : . : . : . :
rJMSF009C07+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTACGGGACCATGCAGATTGATGACTTCA
rJMSF002L24+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMSF021P20+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMSF021J21+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMFF043B18+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMFF051I16+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMFF051K16+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
rJMFF051C18+ AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
                      ____________________________________________________________
consensus AGTGACAATCAGATCAAGATTTGGTGGTGAATTA-GGGACCATGCAGATTGATGACTTCA
 
. : . : . : . : . : . :
rJMSF009C07+ TCAGAGAAGCCAAGAATGCAATTGAGAACNGAACATTCTTTTGAAGTGTATACC
rJMSF002L24+ TCAGAAAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMSF021P20+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMSF021J21+ TCAGAAAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMFF043B18+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMFF051I16+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMFF051K16+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
rJMFF051C18+ TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
                      ____________________________________________________________
consensus TCAGAGAAGCCAAGAATGCAATTGAGAACAGAACATTCTTTTGAAGTGTATACCTTTGAC
 
. : . : . : . : . : . :
rJMSF002L24+ TGTCGAACTCGCTGTGTTATGCGTT
rJMSF021P20+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAAC
rJMSF021J21+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAAC
rJMFF043B18+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
rJMFF051I16+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
rJMFF051K16+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
rJMFF051C18+ TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
                      ____________________________________________________________
consensus TGTCGAACTCGCTGTGTTATGCGTTTATATAAACGTGAAATAGCCGAAAAACATGTACAG
 
. : . : . : . : . : . :
rJMFF043B18+ AATTATCTGGTTCTTCACGAAATATCATCATTTTGAT
rJMFF051I16+ AATTATCTGGTTCTTCACGAAATATCATCATTTTGATAGATCAGGCTGGTTTTGACATGG
rJMFF051K16+ AATTATCTGGTTCTTCACGAAATATCATCATTTTGATAGATCAGGCTGGTTTTGACATGG
rJMFF051C18+ AATTATCTGGTTCTTCACGAAATATCATCATTTTGATAGATCAGGCTGGTTTTGACATGG
                      ____________________________________________________________
consensus AATTATCTGGTTCTTCACGAAATATCATCATTTTGATAGATCAGGCTGGTTTTGACATGG
 
. : . : . : . : . : . :
rJMFF051I16+ CGTCAACCGGTTTNAAATAGAAAAAAAAAAAAAAACTCTCCAGGGT
rJMFF051K16+ CGTCAACCGGTTT
rJMFF051C18+ CGTCAACCGGTTT-AAATAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG
                      ____________________________________________________________
consensus CGTCAACCGGTTTNAAATAGAAAAAAAAAAAAAAACTCTCCAGGGTGATCCGCCATAAGG