| clone | 5'-sequence | 3'-sequence | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq. | length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | |
| JMFF012I22 | Sequence | 588 | 001639 (6) | ref|XP_006471307.1| | 160 | PREDICTED: uncharacterized protein LOC102611747 [Citrus sinensis] | 801 | 001173 (5) | ref|XP_002532007.1| | 1e-22 | conserved hypothetical protein [Ricinus communis] gb|EEF30380.1| conserved hypot |
| JMFF016L12 | Sequence | 570 | 001639 (6) | ref|XP_006471307.1| | 156 | PREDICTED: uncharacterized protein LOC102611747 [Citrus sinensis] | 722 | 001173 (5) | ref|XP_002531759.1| | 2e-22 | conserved hypothetical protein [Ricinus communis] gb|EEF30615.1| conserved hypot |
| JMFF039N18 | Sequence | 582 | 001639 (6) | ref|XP_006471307.1| | 161 | PREDICTED: uncharacterized protein LOC102611747 [Citrus sinensis] | 721 | 001173 (5) | ref|XP_002531759.1| | 1e-22 | conserved hypothetical protein [Ricinus communis] gb|EEF30615.1| conserved hypot |
| JMSF033B15 | Sequence | 633 | 001639 (6) | ref|XP_006485550.1| | 142 | PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis] | 746 | 001173 (5) | ref|XP_006470496.1| | 125 | PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis] |
| JMSF048L18 | Sequence | 694 | 001639 (6) | ref|XP_006471307.1| | 178 | PREDICTED: uncharacterized protein LOC102611747 [Citrus sinensis] | 801 | 001173 (5) | ref|XP_006470496.1| | 128 | PREDICTED: uncharacterized protein LOC102617255 [Citrus sinensis] |
This contig is upended
. : . : . : . : . : . :
rJMSF048L18+ TGTGCAATGTGAAGATGAGTCCTGTTCTATGCT
____________________________________________________________
consensus TGTGCAATGTGAAGATGAGTCCTGTTCTATGCT
. : . : . : . : . : . :
rJMSF048L18+ TTTGTGAGTTGTTCTCTAGCCCAGAAATGCTGGGATTTATTTGAGCACACTATTCCCCAT
____________________________________________________________
consensus TTTGTGAGTTGTTCTCTAGCCCAGAAATGCTGGGATTTATTTGAGCACACTATTCCCCAT
. : . : . : . : . : . :
rJMSF048L18+ CATTGTGTATCTTTTATGGATTGGGTTGAGTTACAGTTTAATAGTTTGTCAGATAATGAG
____________________________________________________________
consensus CATTGTGTATCTTTTATGGATTGGGTTGAGTTACAGTTTAATAGTTTGTCAGATAATGAG
. : . : . : . : . : . :
rJMSF048L18+ CTATGCAAGTTGATATCTATTTGCTGGAAAGTTTGGGATGCTAGAAATGAGAAGGTCTGG
____________________________________________________________
consensus CTATGCAAGTTGATATCTATTTGCTGGAAAGTTTGGGATGCTAGAAATGAGAAGGTCTGG
. : . : . : . : . : . :
rJMSF048L18+ AATAATATTGTGATTTCTTCCCATGATGTTGTCTCAGGTGCTTTATCCTACTTGTTGGAG
rJMFF016L12+ CAGGTGCTTTATCCTACTTGTTGGAG
rJMSF033B15+ CAGGTGCTTTATCCTACTTGTTGGAG
rJMFF012I22+ CAGGTGCTTTATCCTACTTGTTGGAG
rJMFF039N18+ CAGGTGCTTTATCCTACTTGTTGGAG
____________________________________________________________
consensus AATAATATTGTGATTTCTTCCCATGATGTTGTCTCAGGTGCTTTATCCTACTTGTTGGAG
. : . : . : . : . : . :
rJMSF048L18+ TGGCAATCTGCCAATCAGCTCAGCCACCACCAATCCCATGTTTCCCATCAGGTTGAAACT
rJMFF016L12+ TGGCAATCTGCCAATCAGCTCAGCCACCACCAATCCCATGTTTCCCATCAGGTTGAAACT
rJMSF033B15+ TGGCAATCTGCCAATCAGCTCAGCCACCACCAATCCCATGTTTCCCATCAGGTTGAAACT
rJMFF012I22+ TGGCAATCTGCCAATCAGCTCAGCCACCACCAATCCCATGTTTCCCATCAGGTTGAAACT
rJMFF039N18+ TGGCAATCTGCCAATCAGCTCAGCCACCACCAATCCCATGTTTCCCATCAGGTTGAAACT
____________________________________________________________
consensus TGGCAATCTGCCAATCAGCTCAGCCACCACCAATCCCATGTTTCCCATCAGGTTGAAACT
. : . : . : . : . : . :
rJMSF048L18+ TGGTCAAAACCTCTAGTGGGGTGGCTCAAACTCAATAGTGATGAAGCTTTGGATTCAAAT
rJMFF016L12+ TGGTCAAAACCTCTAGTGGGGTGGCTCAAACTCAATAGTGATGAAGCTTTGGATTCAAAT
rJMSF033B15+ TGGTCAAAACCTCTAGTGGGGTGGCTCAAACTCAATAGTGATGAAGCTTTGGATTCAAAT
rJMFF012I22+ TGGTCAAAACCTCTAGTGGGGTGGCTCAAACTCAATAGTGATGAAGCTTTGGATTCAAAT
rJMFF039N18+ TGGTCAAAACCTCTAGTGGGGTGGCTCAAACTCAATAGTGATGAAGCTTTGGATTCAAAT
____________________________________________________________
consensus TGGTCAAAACCTCTAGTGGGGTGGCTCAAACTCAATAGTGATGAAGCTTTGGATTCAAAT
. : . : . : . : . : . :
rJMSF048L18+ AGCAGGTGAATGGGGATGGGCCTTGTGCTTTGGGATGCATATGGTCAATTTGTGGCTGCG
rJMFF016L12+ AGCAGGTGAATGGGGATGGGCCTTGTGCTTTGGGATGCATATGGTCAATTTGTGGCTGCG
rJMSF033B15+ AGCAGGTGAATGGGGATGGGCCTTGTGCTTTGGGATGCATATGGTCAATTTGTGGCTGCG
rJMFF012I22+ AGCAGGTGAATGGGGATGGGCCTTGTGCTTTGGGATGCATATGGTCAATTTGTGGCTGCG
rJMFF039N18+ AGCAGGTGAATGGGGATGGGCCTTGTGCTTTGGGATGCATATGGTCAATTTGTGGCTGCG
____________________________________________________________
consensus AGCAGGTGAATGGGGATGGGCCTTGTGCTTTGGGATGCATATGGTCAATTTGTGGCTGCG
. : . : . : . : . : . :
rJMSF048L18+ AAATCTATTCCCTGGGATGGTCTATGCTTACCTATGGAGGCAGAAGCTATTGCTATAAGA
rJMFF016L12+ AAATCTATTCCCTGGGATGGTCTATGCTTACCTATGGAGGCAGAAGCTATTGCTATAAGA
rJMSF033B15+ AAATCTATTCCCTGGGATGGTCTATGCTTACCTATGGAGGCAGAAGCTATTGCTATAAGA
rJMFF012I22+ AAATCTATTCCCTGGGATGGTCTATGCTTACCTATGGAGGCAGAAGCTATTGCTATAAGA
rJMFF039N18+ AAATCTATTCCCTGGGATGGTCTATGCTTACCTATGGAGGCAGAAGCTATTGCTATAAGA
____________________________________________________________
consensus AAATCTATTCCCTGGGATGGTCTATGCTTACCTATGGAGGCAGAAGCTATTGCTATAAGA
. : . : . : . : . : . :
rJMSF048L18+ GAAGCGCTGAAGTGGTTAAAATCTTTGCAATTGGACAAGGTTCAGATTGAATCCGATTGC
rJMFF016L12+ GAAGCGCTGAAGTGGTTAAAATCTTTGCAATTGGACAAGGTTCAGATTGAATCCGATTGC
rJMSF033B15+ GAAGCGCTGAAGTGGTTAAAATCTTTGCAATTGGACAAGGTTCAGATTGAATCCGATTGC
rJMFF012I22+ GAAGCGCTGAAGTGGTTAAAATCTTTGCAATTGGACAAGGTTCAGATTGAATCCGATTGC
rJMFF039N18+ GAAGCGCTGAAGTGGTTAAAATCTTTGCAATTGGACAAGGTTCAGATTGAATCCGATTGC
____________________________________________________________
consensus GAAGCGCTGAAGTGGTTAAAATCTTTGCAATTGGACAAGGTTCAGATTGAATCCGATTGC
. : . : . : . : . : . :
rJMSF048L18+ ATTAAAGTCATCCAAGCAATTAACAGCACTAGTTTATGTTCTTCTTTTGATTTGATTATC
rJMFF016L12+ ATTAAAGTCATCCAAGCAATTAACAGCACTAGTTTATGTTCTTCTTTTGATTTGATTATC
rJMSF033B15+ ATTAAAGTCATCCAAGCAATTAACAGCACTAGTTTATGTTCTTCTTTTGATTTGATTATC
rJMFF012I22+ ATTAAAGTCATCCAAGCAATTAACAGCACTAGTTTATGTTCTTCTTTTGATTTGATTATC
rJMFF039N18+ ATTAAAGTCATCCAAGCAATTAACAGCACTAGTTTATGTTCTTCTTTTGATTTGATTATC
____________________________________________________________
consensus ATTAAAGTCATCCAAGCAATTAACAGCACTAGTTTATGTTCTTCTTTTGATTTGATTATC
. : . : . : . : . : . :
rJMSF048L18+ AACGATATTAGGGAGATAGCTAGAGACTTTACTAATCTCAGCTTTCATTTTGTTAAACGG
rJMFF016L12+ AACGATATTAGGGAGATAGCTAGAGACTTTACTAATCTCAGCTTTCATTTTGTTAAACGG
rJMSF033B15+ AACGATATTAGGGAGATAGCTAGAGACTTTACTAATCTCAGCTTTCATTTTGTTAAACGG
rJMFF012I22+ AACGATATTAGGGAGATAGCTAGAGACTTTACTAATCTCAGCTTTCATTTTGTTAAACGG
rJMFF039N18+ AACGATATTAGGGAGATAGCTAGAGACTTTACTAATCTCAGCTTTCATTTTGTTAAACGG
____________________________________________________________
consensus AACGATATTAGGGAGATAGCTAGAGACTTTACTAATCTCAGCTTTCATTTTGTTAAACGG
. : . : . : . : . : . :
rJMSF048L18+ TCTGCGAGCAAGGTTGCTCATGAGCTTGCTCGGGAAGCCATGTTCAAGGCTGACTGTATG
rJMFF016L12+ TCTGCGAACAAGGTTGCTCATGAGCTTGCTCGGGAAGCCATGTTCAAGGCTGACTGTATG
rJMSF033B15+ TCTGCGAACAAGGTTGCTCATGAGCTTGCTCGGGAAGCCATGTTTAAGGCTGACTGTATG
rJMFF012I22+ TCTGCGAACAAGGTTGCTCATGAGCTTGCTCGGGAAGCCATGTTCAAGGCTGACTGTATG
rJMFF039N18+ TCTGCGAACAAGGTTGCTCATGAGCTTGCTCGGGAAGCCATGTTCAAGGCTGACTGTATG
____________________________________________________________
consensus TCTGCGAACAAGGTTGCTCATGAGCTTGCTCGGGAAGCCATGTTCAAGGCTGACTGTATG
. : . : . : . : . : . :
rJMSF048L18+ GTCTGTGTTTCGGTTCCTTTTCC
rJMFF016L12+ GTCTGTGTTTCGGTTCCTTTTCCTTGTATTGCTCATAGTCT
rJMSF033B15+ GTCTGTGTTTCGGTTCCTTTTCCTTGTATTGCTCATAGTCT
rJMFF012I22+ GTCTGTGTTTCGGTTCCTTTTCCTTGTATTGCTCATAGTCTTGAGCTTGACTTTTATTAA
rJMFF039N18+ GTCTGTGTTTCGGTTCCTTTTCCTTGTATTGCTCATAGTCTTGAGCTTGACTTTTATTAA
____________________________________________________________
consensus GTCTGTGTTTCGGTTCCTTTTCCTTGTATTGCTCATAGTCTTGAGCTTGACTTTTATTAA