Contig 000925:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF034N05Sequence568000925 (5)ref|XP_009589996.1|1e-28PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]752012754 (5)ref|XP_009341654.1|2e-91PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri]
JMSF022G20Sequence666000925 (5)ref|XP_009589996.1|3e-40PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]779012754 (5)ref|XP_006350341.1|1e-93PREDICTED: protein TIC 40, chloroplastic-like [Solanum tuberosum]
JMSF035E20Sequence651000925 (5)ref|XP_009589996.1|3e-41PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]719012754 (5)ref|XP_009341654.1|2e-92PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri]
JMSF042M01Sequence772000925 (5)ref|XP_009589996.1|2e-40PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]735012754 (5)ref|XP_009341654.1|6e-91PREDICTED: protein TIC 40, chloroplastic-like, partial [Pyrus x bretschneideri]
JMSF046O19Sequence756000925 (5)ref|XP_009589996.1|2e-40PREDICTED: protein TIC 40, chloroplastic isoform X3 [Nicotiana tomentosiformis]702012754 (5)ref|XP_011074953.1|5e-50PREDICTED: protein TIC 40, chloroplastic-like [Sesamum indicum]

Alignment

This contig is upended


. : . : . : . : . : . :
JMSF046O19+ ACAGAGGAAGGCGATGGGG
                      ____________________________________________________________
consensus ACAGAGGAAGGCGATGGGG
 
. : . : . : . : . : . :
JMSF046O19+ TAGCTTCACTAGACGCAGTAGGGTATGAAGGAAACGAGCTAGCTGGACCTGAGGTTGGTG
JMSF042M01+ CTAGACGCAGTAGGGTATGAAGGAAACGAGCTAGCTGGACCTGAGGTTGGTG
                      ____________________________________________________________
consensus TAGCTTCACTAGACGCAGTAGGGTATGAAGGAAACGAGCTAGCTGGACCTGAGGTTGGTG
 
. : . : . : . : . : . :
JMSF035E20+ AAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
JMSF046O19+ GCGGTGGTGGTGGAAAAGGGAAAGGGAAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
JMSF022G20+ AAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
JMSF042M01+ GCGGTGGTGGTGGAAAAGGGAAAGGGAAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
                      ____________________________________________________________
consensus GCGGTGGTGGTGGAAAAGGGAAAGGGAAAGGCGATCCAGGTGAAAACGGAGCATTACCAA
 
. : . : . : . : . : . :
JMSF035E20+ ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCATTGCAT
JMSF046O19+ ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCATTGCAT
JMSF022G20+ ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCACTGCAT
JMSF042M01+ ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCATTGCAT
                      ____________________________________________________________
consensus ATTGATTATTTTGTGTATTCGCCTGTCCCATCATTGTCTTGAAAGCTTGTTGCATTGCAT
 
. : . : . : . : . : . :
JMSF035E20+ AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
JMSF046O19+ AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
JMSF022G20+ AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
JMSF042M01+ AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
                      ____________________________________________________________
consensus AGTTCTTTAATGTTCGAGCAGCCCATGAAAATAGCGCCGACAGAGCAACACCAACTCCAA
 
. : . : . : . : . : . :
JMSF035E20+ TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
JMSF046O19+ TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
JMSF022G20+ TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
JMSF042M01+ TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
                      ____________________________________________________________
consensus TCCAAAACAAAGGTGACCCTAGATTAGATGATGGTGGCGAGGCTGTAAACTGTGGACTCA
 
. : . : . : . : . : . :
JMSF035E20+ CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
JMSF046O19+ CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
JMFF034N05+ CTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
JMSF022G20+ CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
JMSF042M01+ CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
                      ____________________________________________________________
consensus CACCAACTGAAGATGTTTGCTGGCTACCTGAACTAGTGCTTGCAAAACAATCTCTTCCAA
 
. : . : . : . : . : . :
JMSF035E20+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
JMSF046O19+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
JMFF034N05+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
JMSF022G20+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
JMSF042M01+ GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
                      ____________________________________________________________
consensus GCCGTTTCATCAAAATGGTTTTGGTGATTCTAGGGTCCTGAAAGTACGAGACTGTAGAAA
 
. : . : . : . : . : . :
JMSF035E20+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
JMSF046O19+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
JMFF034N05+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
JMSF022G20+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
JMSF042M01+ AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
                      ____________________________________________________________
consensus AGGAGGTTTTGAGTCTGGTAATTCCGATCATTTTGGTGGATTTTCTGGGCAACACAGGGA
 
. : . : . : . : . : . :
JMSF035E20+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
JMSF046O19+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
JMFF034N05+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
JMSF022G20+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
JMSF042M01+ GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
                      ____________________________________________________________
consensus GACCAAAGATGGGTTTTCCGTTGTTTGGAGAGAGACCCAGCACCAGTTGCGGGCAACAAG
 
. : . : . : . : . : . :
JMSF035E20+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
JMSF046O19+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
JMFF034N05+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
JMSF022G20+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
JMSF042M01+ AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAGACAAGTTTTTTAAA
                      ____________________________________________________________
consensus AAGATGAGGCCGCCATAGCTAAGCTTACCATTACTTTGGGAAGAAAACAAGTTTTTTAAA
 
. : . : . : . : . : . :
JMSF035E20+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
JMSF046O19+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
JMFF034N05+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
JMSF022G20+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
JMSF042M01+ AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
                      ____________________________________________________________
consensus AAATTCAATCCTAGGGTTCAAGAATGGGGTTTGAAATGAGAATTGGATGGGAAACAGACA
 
. : . : . : . : . : . :
JMSF035E20+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
JMSF046O19+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
JMFF034N05+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
JMSF022G20+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
JMSF042M01+ GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
                      ____________________________________________________________
consensus GGGAGAGGGCAACGTTGGGTCCTTCCTCGGAGTTTCCGAGGTTTTGATTTTGAAATGGGG
 
. : . : . : . : . : . :
JMSF035E20+ GACACTAAACTACTG
JMSF046O19+ GACACTAAACTACTGT
JMFF034N05+ GACACTAAACTACTGT
JMSF022G20+ GACACTAAACTACTGTGATATC
JMSF042M01+ GACACTAAACTACTGTGATATCGGCAGCAAGAACTCGAGAAGATGGAGTGTTGAAGATTC
                      ____________________________________________________________
consensus GACACTAAACTACTGTGATATCGGCAGCAAGAACTCGAGAAGATGGAGTGTTGAAGATTC