Contig 000449:  Sequence
BLAST Hits against nr-aa DB Show

clone5'-sequence3'-sequence
Seq.lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFS026A02Sequence612000449 (7)ref|XP_006344239.1|2e-102PREDICTED: auxin efflux carrier component 3-like [Solanum tuberosum]
JMFS045G08Sequence626000449 (7)ref|XP_009601548.1|3e-110PREDICTED: auxin efflux carrier component 7-like [Nicotiana tomentosiformis] gb|
JMFS072E11Sequence626000449 (7)ref|XP_010320545.1|8e-107PREDICTED: auxin efflux facilitator SlPIN4 isoform X1 [Solanum lycopersicum]
JMFS076A07Sequence656000449 (7)ref|XP_010320545.1|6e-120PREDICTED: auxin efflux facilitator SlPIN4 isoform X1 [Solanum lycopersicum]
JMFS078C11Sequence625000449 (7)ref|XP_009601548.1|3e-110PREDICTED: auxin efflux carrier component 7-like [Nicotiana tomentosiformis] gb|
JMFS123G02Sequence576000449 (7)ref|XP_010320545.1|2e-93PREDICTED: auxin efflux facilitator SlPIN4 isoform X1 [Solanum lycopersicum]
JMSF004D09Sequence280000449 (7)ref|XP_009104930.1|2e-23PREDICTED: auxin efflux carrier component 3 [Brassica rapa]

Alignment

This contig is upended


. : . : . : . : . : . :
JMFS076A07+ TGACCGTCCAAAGAAACCACGTCG
                      ____________________________________________________________
consensus TGACCGTCCAAAGAAACCACGTCG
 
. : . : . : . : . : . :
JMFS076A07+ GACTCCACCTTAAACTCCACAATCGACGCCGCCGTCTCCGGGAACTGCTCCATTATCAGC
JMFS078C11+ AATCGACGCCGCCGTCTCCGGGAACTGCTCCATTATCAGC
JMFS045G08+ AATCGACGCCGCCGTCTCCGGGAACTGCTCCATTATCAGC
JMFS026A02+ TCCATTATCAGC
JMFS072E11+ TCTCCGGGAACTGCTCCATTATCAGC
                      ____________________________________________________________
consensus GACTCCACCTTAAACTCCACAATCGACGCCGCCGTCTCCGGGAACTGCTCCATTATCAGC
 
. : . : . : . : . : . :
JMFS076A07+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS078C11+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS045G08+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS026A02+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS123G02+ ACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
JMFS072E11+ ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
                      ____________________________________________________________
consensus ATCTTGGCGCCGCGGTACTCGAACAAGAACAGCAACAAAGTATACCAAATAATGCACTGA
 
. : . : . : . : . : . :
JMFS076A07+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS078C11+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS045G08+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS026A02+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS123G02+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
JMFS072E11+ AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
                      ____________________________________________________________
consensus AGCACCACCACCTGCACCATTAAGCTGCCGGAATATTCGCCGTACATCGCGATCAACAGC
 
. : . : . : . : . : . :
JMFS076A07+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS078C11+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS045G08+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS026A02+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS123G02+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
JMFS072E11+ GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
                      ____________________________________________________________
consensus GGGATCCCCATAACCAAAGTATTGGGGAGCGTGGAGAGAGAGAAAATGGTTATACTCCAC
 
. : . : . : . : . : . :
JMFS076A07+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS078C11+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS045G08+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS026A02+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS123G02+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
JMFS072E11+ TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
                      ____________________________________________________________
consensus TCCAGGCTGCCGTTCTTGGTGAAATTCGCCCAGACGGCGAGCACCGCCAGCATGATGACT
 
. : . : . : . : . : . :
JMFS076A07+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS078C11+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS045G08+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS026A02+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS123G02+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
JMFS072E11+ TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
                      ____________________________________________________________
consensus TTCTGGAGGCTGTCGGCGGCGATGAACCGGAAGTTCATGGCGTACGGGTTGTTGGCGGCG
 
. : . : . : . : . : . :
JMFS076A07+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMFS078C11+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMFS045G08+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMFS026A02+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMFS123G02+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
JMSF004D09+ CGACGAAGCGGTTTATGCCGGAG
JMFS072E11+ ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
                      ____________________________________________________________
consensus ATGAAGTGGAAGGAGAGAAGCGGGACGGCGAAAATGGCGACGAAGCGGTTTATGCCGGAG
 
. : . : . : . : . : . :
JMFS076A07+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS078C11+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS045G08+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS026A02+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS123G02+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMSF004D09+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
JMFS072E11+ CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
                      ____________________________________________________________
consensus CACTGGTCGGGGGTGAAGATTTTCCACCACCGGACGGAGCCGTAGGCTAAGATCATTGCG
 
. : . : . : . : . : . :
JMFS076A07+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMFS078C11+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMFS045G08+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMFS026A02+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMFS123G02+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
JMSF004D09+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTT
JMFS072E11+ ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
                      ____________________________________________________________
consensus ACGTAGAGAGGGATCACCGCCGTCAAGACGACGTATAGATCGTGCCACGTAATCATTTTC
 
. : . : . : . : . : . :
JMFS076A07+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS078C11+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS045G08+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS026A02+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS123G02+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
JMFS072E11+ CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
                      ____________________________________________________________
consensus CGGCGAGGTCGGAGAAGAAGGGTAGAATGGGGAGAAAAAAAAGTCGTTATGCAACTTTAA
 
. : . : . : . : . : . :
JMFS076A07+ TGATTGACACTTTGTTCTCTGAACCAGTGAAA
JMFS078C11+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCA
JMFS045G08+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAG
JMFS026A02+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAGAGAAAGAGAGAT
JMFS123G02+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAGAGAAAGAGAGAT
JMFS072E11+ TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAGAGAAAGAGAGATAG
                      ____________________________________________________________
consensus TGATTGACACTTTGTTCTCTGAACCAGTGAAAGCAGTACTGTTCAGAGAAAGAGAGATAG