clone | seq. | 5'-sequence | 3'-sequence | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
JMFF001I02 | Sequence | 655 | 004680 (19) | emb|CDP18882.1| | 2e-52 | unnamed protein product [Coffea canephora] | 630 | 004680 (19) | emb|CDP18882.1| | 1e-52 | unnamed protein product [Coffea canephora] |
JMFF003O17 | Sequence | 590 | 004680 (19) | emb|CDP18882.1| | 9e-53 | unnamed protein product [Coffea canephora] | 590 | 004680 (19) | emb|CDP18882.1| | 9e-53 | unnamed protein product [Coffea canephora] |
JMFF021O20 | Sequence | 486 | 004680 (19) | emb|CDP18882.1| | 3e-53 | unnamed protein product [Coffea canephora] | 641 | 004680 (19) | emb|CDP18882.1| | 2e-52 | unnamed protein product [Coffea canephora] |
JMFF024D01 | Sequence | 457 | 004680 (19) | emb|CDP18882.1| | 2e-53 | unnamed protein product [Coffea canephora] | 570 | 004680 (19) | emb|CDP18882.1| | 7e-53 | unnamed protein product [Coffea canephora] |
JMFF051D04 | Sequence | 625 | 004680 (19) | emb|CDP18882.1| | 1e-52 | unnamed protein product [Coffea canephora] | 493 | 004680 (19) | ref|XP_007020021.1| | 2e-32 | Uncharacterized protein TCM_036395 [Theobroma cacao] gb|EOY17246.1| Uncharacteri |
JMFN006G10 | Sequence | 502 | 004680 (19) | emb|CDP18882.1| | 3e-53 | unnamed protein product [Coffea canephora] | |||||
JMFN015D01 | Sequence | 496 | 004680 (19) | emb|CDP18882.1| | 2e-53 | unnamed protein product [Coffea canephora] | |||||
JMFN035L08 | Sequence | 432 | 004680 (19) | emb|CDP18882.1| | 3e-41 | unnamed protein product [Coffea canephora] | |||||
JMFN036C15 | Sequence | 521 | 004680 (19) | emb|CDP18882.1| | 4e-53 | unnamed protein product [Coffea canephora] | |||||
JMFN041L08 | Sequence | 565 | 004680 (19) | emb|CDP18882.1| | 7e-53 | unnamed protein product [Coffea canephora] | |||||
JMFS024G11 | Sequence | 514 | 004680 (19) | emb|CDP18882.1| | 4e-53 | unnamed protein product [Coffea canephora] | |||||
JMFS044G07 | Sequence | 503 | 004680 (19) | emb|CDP18882.1| | 2e-53 | unnamed protein product [Coffea canephora] | |||||
JMSF034J23 | Sequence | 646 | 004680 (19) | emb|CDP18882.1| | 2e-52 | unnamed protein product [Coffea canephora] | 597 | 004680 (19) | emb|CDP18882.1| | 1e-52 | unnamed protein product [Coffea canephora] |
Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.
SCORE============================================Contig004680============================================ 685 14 ---------------------------------------------------------------------------------------->JMFF051D04 <-----------------------------------------------------------------------rJMFF051D04 43 ---------------------------------------------------------------------->JMFF021O20 <---------------------------------------------------------------------------------------------rJMFF021O20 72 ----------------------------------------------------------------------------------------------->JMFF001I02 <----------------------------------------------------------------------------------------rJMFF001I02 91 --------------------------------------------------------------------------------------------->JMSF034J23 <--------------------------------------------------------------------------------------rJMSF034J23 94 ------------------------------------------------------------------------------------->JMFF003O17 <-------------------------------------------------------------------------------------rJMFF003O17 114 ------------------------------------------------------------------>JMFF024D01 <----------------------------------------------------------------------------------rJMFF024D01
The following clones don't have the opposite end in this pair.
-------------------------------------------------------------------------->JMFS024G11- ---------------------------------------------------------------------------------->JMFN041L08- -------------------------------------------------------------->JMFN035L08- ------------------------------------------------------------------------>JMFN015D01- --------------------------------------------------------------------------->JMFN036C15- ------------------------------------------------------------------------->JMFS044G07- ------------------------------------------------------------------------>JMFN006G10-