| clone | seq. | 5'-sequence | 3'-sequence | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| length | contig | BestHit | Evalue | description | length | contig | BestHit | Evalue | description | ||
| JMFF026I05 | Sequence | 496 | 003653 (18) | ref|XP_009609882.1| | 1e-102 | PREDICTED: splicing factor 3B subunit 4-like [Nicotiana tomentosiformis] | 678 | 003653 (18) | ref|XP_002516394.1| | 9e-26 | spliceosome associated protein, putative [Ricinus communis] gb|EEF46011.1| splic |
| JMFN029L15 | Sequence | 639 | 003653 (18) | ref|XP_002516394.1| | 3e-23 | spliceosome associated protein, putative [Ricinus communis] gb|EEF46011.1| splic | |||||
| JMSF020K16 | Sequence | 678 | 003653 (18) | gb|AEI98619.1| | 4e-135 | hypothetical protein 111O18.6 [Coffea canephora] emb|CDP02822.1| unnamed protein | 701 | 003653 (18) | ref|XP_002516394.1| | 4e-49 | spliceosome associated protein, putative [Ricinus communis] gb|EEF46011.1| splic |
| JMSF026I04 | Sequence | 679 | 003653 (18) | gb|AEI98619.1| | 4e-135 | hypothetical protein 111O18.6 [Coffea canephora] emb|CDP02822.1| unnamed protein | 747 | 003653 (18) | ref|XP_002516394.1| | 3e-38 | spliceosome associated protein, putative [Ricinus communis] gb|EEF46011.1| splic |
| JMSF039H18 | Sequence | 662 | 003653 (18) | gb|KHG01547.1| | 4e-155 | Polyadenylate-binding, cytoplasmic and nuclear [Gossypium arboreum] | 756 | 003653 (18) | ref|XP_002516394.1| | 2e-45 | spliceosome associated protein, putative [Ricinus communis] gb|EEF46011.1| splic |
| JMSF044I04 | Sequence | 719 | 003653 (18) | gb|AEI98619.1| | 6e-147 | hypothetical protein 111O18.6 [Coffea canephora] emb|CDP02822.1| unnamed protein | 732 | 003653 (18) | ref|XP_002516394.1| | 5e-42 | spliceosome associated protein, putative [Ricinus communis] gb|EEF46011.1| splic |
| JMSF044J24 | Sequence | 683 | 003653 (18) | gb|AEI98619.1| | 6e-137 | hypothetical protein 111O18.6 [Coffea canephora] emb|CDP02822.1| unnamed protein | 701 | 003653 (18) | ref|XP_002516394.1| | 2e-38 | spliceosome associated protein, putative [Ricinus communis] gb|EEF46011.1| splic |
| JMSF053O19 | Sequence | 276 | 003653 (18) | emb|CBI17545.3| | 2e-14 | unnamed protein product [Vitis vinifera] | 737 | 003653 (18) | ref|XP_002516394.1| | 5e-35 | spliceosome associated protein, putative [Ricinus communis] gb|EEF46011.1| splic |
Explanatory notes: "*" The opposite end is in another contig. "**" The opposite end is in same contig. "#" The opposite end is singlet. "-" The opposite end has no seqence.
SCORE============================================Contig003653============================================1355 1 ------------------------------------------------->JMSF026I04 <------------------------------------------------------rJMSF026I04 34 ---------------------------------------------------->JMSF044I04 <-----------------------------------------------------rJMSF044I04 45 ------------------------------------------------->JMSF044J24 <---------------------------------------------------rJMSF044J24 59 --------------->JMSF053O19 <-------------------------------------------------rJMSF053O19 81 ------------------------------------>JMFF026I05 <-------------------------------------------------rJMFF026I05 87 ------------------------------------------------->JMSF020K16 <---------------------------------------------------rJMSF020K16 184 ------------------------------------------------>JMSF039H18 <------------------------------------------------------rJMSF039H18
The following clones don't have the opposite end in this pair.
------------------------->JMSF005N06* --------------------------->JMSF004H20* --------------------------------------------->JMFN029L15- <---------------------------rJMSF004F18*