List of clones in pair P018253.

cloneseq.5'-sequence3'-sequence
lengthcontigBestHitEvaluedescriptionlengthcontigBestHitEvaluedescription
JMFF001D21Sequence777006385 (80)ref|XP_008358804.1|2e-146PREDICTED: LOW QUALITY PROTEIN: polyubiquitin 11-like, partial [Malus domestica919006385 (80)gb|ACJ85643.1|2e-114unknown [Medicago truncatula]
JMFF001O16Sequence809006385 (80)gb|ABI84246.1|1e-123polyubiquitin 10 [Arachis hypogaea]854006385 (80)ref|NP_567286.1|2e-142ubiquitin 11 [Arabidopsis thaliana] ref|NP_849291.1| polyubiquitin 14 [Arabidops
JMFF002D04Sequence742006385 (80)ref|XP_003619702.1|2e-115Ubiquitin-like protein [Medicago truncatula]870006385 (80)gb|AAF04147.1|7e-115ubiquitin precursor [Hevea brasiliensis]
JMFF002F16Sequence814006385 (80)gb|AAK68824.1|6e-110Unknown protein [Arabidopsis thaliana]816006385 (80)gb|AAF04147.1|1e-119ubiquitin precursor [Hevea brasiliensis]
JMFF003K01Sequence851006385 (80)gb|ABH08755.1|4e-149ubiquitin [Arabidopsis thaliana]
JMFF004O05Sequence774006385 (80)emb|CCO30833.1|9e-124Polyubiquitin [Rhizoctonia solani AG-1 IB]877006385 (80)gb|ACJ85643.1|2e-124unknown [Medicago truncatula]
JMFF007N04Sequence764006385 (80)gb|ABI84246.1|1e-122polyubiquitin 10 [Arachis hypogaea]719006385 (80)gb|ABH08753.1|2e-120ubiquitin [Arabidopsis thaliana]
JMFF009B16Sequence745006385 (80)ref|XP_010235843.1|3e-145PREDICTED: polyubiquitin 11 isoform X1 [Brachypodium distachyon]838006385 (80)gb|AAF04147.1|5e-117ubiquitin precursor [Hevea brasiliensis]
JMFF009G20Sequence891006385 (80)gb|ACJ85643.1|9e-134unknown [Medicago truncatula]
JMFF009M19Sequence740006385 (80)emb|CAD27944.1|6e-135polyubiquitin-like [Oryza sativa]902006385 (80)ref|XP_009114489.1|9e-149PREDICTED: polyubiquitin-like [Brassica rapa]
JMFF010N12Sequence801006385 (80)gb|KDO51955.1|4e-143hypothetical protein CISIN_1g026932mg [Citrus sinensis] gb|KDO51956.1| hypotheti899006385 (80)ref|XP_002872805.1|6e-151hypothetical protein ARALYDRAFT_490270 [Arabidopsis lyrata subsp. lyrata] gb|EF
JMFF012I01Sequence767006385 (80)gb|AAK68824.1|8e-114Unknown protein [Arabidopsis thaliana]881006385 (80)gb|ACJ85643.1|1e-133unknown [Medicago truncatula]
JMFF012M06Sequence806006385 (80)gb|AAP31578.1|5e-137ubiquitin [Hevea brasiliensis]892006385 (80)gb|ABY60454.1|1e-101putative polyubiquitin [Adonis aestivalis var. palaestina]
JMFF013I06Sequence812006385 (80)ref|XP_008358804.1|1e-128PREDICTED: LOW QUALITY PROTEIN: polyubiquitin 11-like, partial [Malus domestica884006385 (80)gb|ABH08753.1|4e-142ubiquitin [Arabidopsis thaliana]
JMFF013J04Sequence841006385 (80)gb|ACJ85643.1|7e-105unknown [Medicago truncatula]
JMFF014G10Sequence139006385 (80)108006385 (80)
JMFF016O09Sequence771006385 (80)gb|ACA58351.1|2e-116ubiquitin-like protein [Sandersonia aurantiaca]886006385 (80)gb|ABH08755.1|5e-145ubiquitin [Arabidopsis thaliana]
JMFF018D01Sequence749006385 (80)ref|XP_010235843.1|3e-149PREDICTED: polyubiquitin 11 isoform X1 [Brachypodium distachyon]907006385 (80)ref|NP_567286.1|2e-140ubiquitin 11 [Arabidopsis thaliana] ref|NP_849291.1| polyubiquitin 14 [Arabidops
JMFF021C20Sequence695006385 (80)gb|AEZ49160.1|3e-101polyubiquitin, partial [Wolffia australiana]797006385 (80)gb|AEW46688.1|1e-87polyubiquitin, partial [Ulva linza]
JMFF022O21Sequence442006385 (80)ref|XP_010062974.1|2e-39PREDICTED: polyubiquitin [Eucalyptus grandis]878006385 (80)gb|ABH08753.1|1e-132ubiquitin [Arabidopsis thaliana]
JMFF026H09Sequence725006385 (80)gb|ABI84246.1|3e-125polyubiquitin 10 [Arachis hypogaea]898006385 (80)ref|XP_009114489.1|3e-145PREDICTED: polyubiquitin-like [Brassica rapa]
JMFF028F09Sequence724006385 (80)ref|XP_003619702.1|5e-124Ubiquitin-like protein [Medicago truncatula]876006385 (80)gb|ABK94002.1|1e-155unknown [Populus trichocarpa]
JMFF028K01Sequence690006385 (80)gb|AFW66442.1|1e-129putative ubiquitin family protein, partial [Zea mays]
JMFF030K16Sequence740006385 (80)ref|XP_003619702.1|9e-118Ubiquitin-like protein [Medicago truncatula]595006385 (80)gb|AHI85710.1|6e-100stress-induced protein 5, partial [Capsicum annuum]
JMFF031L09Sequence796006385 (80)ref|XP_002872805.1|4e-150hypothetical protein ARALYDRAFT_490270 [Arabidopsis lyrata subsp. lyrata] gb|EF885006385 (80)gb|ACJ85643.1|3e-135unknown [Medicago truncatula]
JMFF033E08Sequence778006385 (80)gb|ABF06579.2|1e-104polyubiquitin, partial [Gladiolus grandiflorus]859006385 (80)ref|XP_009114489.1|2e-165PREDICTED: polyubiquitin-like [Brassica rapa]
JMFF033G20Sequence729006385 (80)gb|ABI84246.1|1e-124polyubiquitin 10 [Arachis hypogaea]872006385 (80)ref|NP_567286.1|5e-151ubiquitin 11 [Arabidopsis thaliana] ref|NP_849291.1| polyubiquitin 14 [Arabidops
JMFF036A22Sequence784006385 (80)gb|ABI84246.1|3e-123polyubiquitin 10 [Arachis hypogaea]867006385 (80)gb|ABH08753.1|1e-131ubiquitin [Arabidopsis thaliana]
JMFF036P16Sequence806006385 (80)ref|XP_008358804.1|2e-141PREDICTED: LOW QUALITY PROTEIN: polyubiquitin 11-like, partial [Malus domestica873006385 (80)gb|ABH08753.1|2e-113ubiquitin [Arabidopsis thaliana]
JMFF038H23Sequence786006385 (80)gb|AAP31578.1|8e-125ubiquitin [Hevea brasiliensis]876006385 (80)gb|ACJ85643.1|1e-138unknown [Medicago truncatula]
JMFF039G24Sequence811006385 (80)gb|AEZ49160.1|4e-133polyubiquitin, partial [Wolffia australiana]873006385 (80)gb|ACJ85643.1|2e-121unknown [Medicago truncatula]
JMFF045O22Sequence646006385 (80)ref|XP_010062974.1|2e-97PREDICTED: polyubiquitin [Eucalyptus grandis]607006385 (80)ref|NP_001190681.1|4e-96ubiquitin 11 [Arabidopsis thaliana] ref|XP_003626480.1| Ubiquitin-like protein [
JMFF048O19Sequence509006385 (80)gb|AAZ82816.1|2e-96ubiquitin monomer protein [Morus mongolica]370006385 (80)ref|XP_008439961.1|2e-41PREDICTED: polyubiquitin-like [Cucumis melo]
JMFF048O20Sequence148006385 (80)emb|CDR41652.1|9e-09CYFA0S07e04632g1_1 [Cyberlindnera fabianii]529006385 (80)ref|WP_037767754.1|2e-30ubiquitin [Streptomyces olindensis] gb|KDN74153.1| ubiquitin [Streptomyces olind
JMFF050N18Sequence543006385 (80)gb|KJB69254.1|2e-105hypothetical protein B456_011G016600 [Gossypium raimondii]491006385 (80)emb|CAD56223.1|4e-53polyubiquitin [Cicer arietinum]
JMFN003L23Sequence627006385 (80)ref|NP_567286.1|3e-144ubiquitin 11 [Arabidopsis thaliana] ref|NP_849291.1| polyubiquitin 14 [Arabidops
JMFN005M07Sequence626006385 (80)gb|ABH08753.1|1e-139ubiquitin [Arabidopsis thaliana]
JMFN012O04Sequence593006385 (80)ref|XP_010235843.1|2e-123PREDICTED: polyubiquitin 11 isoform X1 [Brachypodium distachyon]
JMFN032P06Sequence619006385 (80)gb|AAO43307.1|8e-142putative polyubiquitin [Arabidopsis thaliana]
JMFS046F03Sequence501006385 (80)ref|XP_009609090.1|1e-66PREDICTED: polyubiquitin 11, partial [Nicotiana tomentosiformis]
JMFS092F03Sequence625006385 (80)ref|XP_010235843.1|4e-127PREDICTED: polyubiquitin 11 isoform X1 [Brachypodium distachyon]
JMFS133F02Sequence276006385 (80)ref|XP_004583865.1|7e-22PREDICTED: polyubiquitin-B-like [Ochotona princeps]
JMSF022H17Sequence728006385 (80)ref|XP_010235843.1|6e-146PREDICTED: polyubiquitin 11 isoform X1 [Brachypodium distachyon]863006385 (80)ref|XP_009114489.1|3e-158PREDICTED: polyubiquitin-like [Brassica rapa]
JMSF036G11Sequence212006385 (80)158006385 (80)

Contig 6385 BLAST Hits against nr-aa DB Show

Alignment

Explanatory notes:   "*" The opposite end is in another contig.  "**" The opposite end is in same contig.   "#" The opposite end is singlet.   "-" The opposite end has no seqence.

SCORE============================================Contig006385============================================1253         
  28 ------------------------------------------------------->JMFF012I01                                               
                                  <--------------------------------------------------------------------rJMFF012I01  
  28 ------------------------------------------------------------->JMFF001D21                                         
                                <----------------------------------------------------------------------rJMFF001D21  
  30 ------------------------------------------->JMFF050N18                                                           
                                                                 <-------------------------------------rJMFF050N18  
  30 --------------------------------------------------------->JMFF002D04                                             
                                 <---------------------------------------------------------------------rJMFF002D04  
  30 --------------------------------------------------------->JMFF016O09                                             
                                <----------------------------------------------------------------------rJMFF016O09  
  36 ------------------------------------------------------------->JMFF031L09                                         
                                   <------------------------------------------------------------------rJMFF031L09  
  37 ---------------------------------------------------->JMFF039G24                                                  
                                           <-----------------------------------------------------------rJMFF039G24  
  37 -------------------------------------------------------->JMFF036P16                                              
                                     <-----------------------------------------------------------------rJMFF036P16  
  47  ------------------------------------------------------------>JMFF004O05                                         
                                 <--------------------------------------------------------------------rJMFF004O05  
  61 ---------------------------------------------------->JMFF001O16                                                  
                                  <------------------------------------------------------------------rJMFF001O16  
  63 ----------------------------------------------------------->JMFF013I06                                           
                            <-----------------------------------------------------------------------rJMFF013I06  
  67 ---------------------------------------------------->JMFF002F16                                                  
                                  <-----------------------------------------------------------------rJMFF002F16  
  96 ---------------------------------------------------->JMFF045O22                                                  
                                                   <----------------------------------------------rJMFF045O22  
 107 ----------->JMFF048O20                                                                                           
                                                                      <--------------------------rJMFF048O20  
 110 ----------------------------------------->JMFF048O19                                                             
                                                                    <---------------------------rJMFF048O19  
 115 ----------------------------------------------------------->JMFF009B16                                           
                                   <-------------------------------------------------------------rJMFF009B16  
 118  ----------------------------------------------------------->JMFF038H23                                          
                                <---------------------------------------------------------------rJMFF038H23  
 119  ---------------------------------------------------------->JMFF033G20                                           
                          <----------------------------------------------------------------------rJMFF033G20  
 121  ----------------------------------------------->JMFF030K16                                                      
                                                <-----------------------------------------------rJMFF030K16  
 121  ---------------------------------------------------->JMFF021C20                                                 
                                            <---------------------------------------------------rJMFF021C20  
 122  ----------------------------------------------------->JMFF033E08                                                
                          <---------------------------------------------------------------------rJMFF033E08  
 124  ----------------------------------------------------------->JMFF018D01                                          
                                  <-------------------------------------------------------------rJMFF018D01  
 124 ---------------------------------------------------------->JMFF026H09                                            
                            <------------------------------------------------------------------rJMFF026H09  
 126 ---------------------------------------------------------->JMFF009M19                                            
                         <----------------------------------------------------------------------rJMFF009M19  
 127 ------------------------------------------------>JMFF007N04                                                      
                                      <--------------------------------------------------------rJMFF007N04  
 128  --------------------------------------------------------->JMFF010N12                                            
                         <----------------------------------------------------------------------rJMFF010N12  
 128 ---------------------------------------------------------->JMFF028F09                                            
                         <---------------------------------------------------------------------rJMFF028F09  
 129  ------------------------------------------------->JMFF036A22                                                    
                             <-----------------------------------------------------------------rJMFF036A22  
 130  ----------------------------->JMFF022O21                                                                        
                             <------------------------------------------------------------------rJMFF022O21  
 136  --------------------------------------------------------->JMFF012M06                                            
                                    <----------------------------------------------------------rJMFF012M06  
 144 --------------------------------------------------------->JMSF022H17                                             
                             <----------------------------------------------------------------rJMSF022H17  
1095                                                                                 --------------->JMSF036G11       
                                                                                     <------------rJMSF036G11  
1145                                                                                          ---------->JMFF014G10   
                                                                                              <--------rJMFF014G10

The following clones don't have the opposite end in this pair.

       ------------------------------------------------>JMFS092F03-                                                   
                                                                            --------------------->JMFS133F02-         
                                   <-------------------------------------------------------------------rJMFF038M12*   
                                   -------------------------------------------------->JMFN003L23-                     
                                              -------------------------->JMFS046F03-                                  
     ----------------->JMSF005P16*                                                                                    
       ------------------------------------------------>JMFN012O04-                                                   
                                 <-------------------------------------------------------------rJMFF038K07*           
                            -------------------------------------------------->JMFN032P06-                            
                          <--------------------------------------------------------------------rJMFF003K01-           
                                    -------------------------------------------------->JMFN005M07-                    
     ------------------------------------------------------->JMFF028K01-                                              
                                     <---------------------------------------------------------rJMFF009G20-           
                                      <-------------------------------------------------------------rJMFF013J04-